Wall clock time and date at job start Tue Mar 31 2020 15:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46730 * 2 1 4 4 O 1.42893 * 109.47204 * 120.00133 * 2 1 3 5 5 C 1.35769 * 117.00157 * 90.00517 * 4 2 1 6 6 N 1.32136 * 119.70946 * 0.02562 * 5 4 2 7 7 C 1.32000 * 121.73365 * 179.97438 * 6 5 4 8 8 C 1.38185 * 120.94999 * 0.02562 * 7 6 5 9 9 Cl 1.73602 * 120.34269 * 179.97438 * 8 7 6 10 10 C 1.38835 * 119.31758 * 359.70459 * 8 7 6 11 11 C 1.38938 * 118.41668 * 0.53845 * 10 8 7 12 12 N 1.40172 * 120.49887 * 179.76449 * 11 10 8 13 13 C 1.34769 * 120.00163 * 34.11343 * 12 11 10 14 14 O 1.21596 * 120.00147 * 355.78928 * 13 12 11 15 15 N 1.34778 * 120.00102 * 175.78091 * 13 12 11 16 16 C 1.46494 * 120.00352 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.47209 * 325.00971 * 16 15 13 18 18 C 1.53007 * 109.46992 * 85.00230 * 16 15 13 19 19 C 1.50698 * 109.47662 * 205.00200 * 16 15 13 20 20 H 1.08002 * 119.99624 * 0.02562 * 19 16 15 21 21 C 1.37872 * 120.00107 * 180.27462 * 19 16 15 22 22 N 1.31520 * 119.99885 * 179.72339 * 21 19 16 23 23 Si 1.86799 * 120.00206 * 359.73095 * 21 19 16 24 24 H 1.48493 * 109.47309 * 89.99788 * 23 21 19 25 25 H 1.48500 * 109.46890 * 209.99683 * 23 21 19 26 26 H 1.48501 * 109.46871 * 329.99320 * 23 21 19 27 27 H 1.09002 * 109.47223 * 299.99199 * 1 2 3 28 28 H 1.09000 * 109.47316 * 60.00080 * 1 2 3 29 29 H 1.09001 * 109.46601 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47223 * 240.00801 * 2 1 3 31 31 H 1.09000 * 109.46931 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47222 * 300.00540 * 3 2 1 33 33 H 1.09002 * 109.46613 * 60.00427 * 3 2 1 34 34 H 1.08002 * 119.53158 * 179.97438 * 7 6 5 35 35 H 1.08007 * 120.79348 * 180.29535 * 10 8 7 36 36 H 0.97003 * 119.99242 * 214.12340 * 12 11 10 37 37 H 0.97002 * 119.99867 * 0.02562 * 15 13 12 38 38 H 1.08989 * 109.47408 * 179.97438 * 18 16 15 39 39 H 1.09002 * 109.47062 * 300.00236 * 18 16 15 40 40 H 1.09002 * 109.46563 * 59.99775 * 18 16 15 41 41 H 0.96993 * 119.99992 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2119 -2.0118 1.0651 6 7 1.9707 -2.6264 -0.0795 7 6 2.1571 -3.9252 -0.2229 8 6 2.6148 -4.6977 0.8275 9 17 2.8538 -6.4049 0.6216 10 6 2.8870 -4.0936 2.0475 11 6 2.6761 -2.7258 2.1696 12 7 2.9318 -2.0721 3.3829 13 6 3.9450 -2.4845 4.1701 14 8 4.5888 -3.4702 3.8660 15 7 4.2449 -1.8043 5.2943 16 6 5.3466 -2.2522 6.1497 17 1 5.3951 -3.3411 6.1394 18 6 6.6647 -1.6781 5.6261 19 6 5.1149 -1.7729 7.5596 20 1 4.2347 -1.1930 7.7949 21 6 6.0291 -2.0704 8.5478 22 7 5.8296 -1.6475 9.7770 23 14 7.5512 -3.0739 8.1408 24 1 8.6530 -2.1620 7.7412 25 1 7.9633 -3.8546 9.3349 26 1 7.2473 -4.0028 7.0228 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 3.1299 1.4427 -0.0005 32 1 1.6765 1.9565 -0.8900 33 1 1.6766 1.9563 0.8901 34 1 1.9482 -4.3912 -1.1746 35 1 3.2502 -4.6738 2.8830 36 1 2.3794 -1.3230 3.6560 37 1 3.7312 -1.0181 5.5371 38 1 7.4843 -2.0110 6.2627 39 1 6.8323 -2.0248 4.6063 40 1 6.6162 -0.5892 5.6363 41 1 6.4730 -1.8564 10.4722 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455847518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:05 Heat of formation + Delta-G solvation = -32.532455 kcal Electronic energy + Delta-G solvation = -25565.411889 eV Core-core repulsion = 21700.193601 eV Total energy + Delta-G solvation = -3865.218288 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.21767 -39.60216 -38.44417 -36.62021 -35.68143 -34.58401 -33.35572 -32.58117 -31.60142 -30.16305 -28.82992 -27.52649 -25.22935 -24.59050 -23.43199 -21.72950 -21.25920 -20.09200 -18.92528 -18.45980 -17.71191 -16.88833 -16.31823 -15.93078 -15.74558 -15.24465 -14.91610 -14.63340 -14.44935 -14.23430 -13.77386 -13.41379 -13.30696 -13.07687 -12.88146 -12.75930 -12.58760 -12.39875 -12.22237 -11.95351 -11.84741 -11.48073 -11.32093 -11.14509 -10.91385 -10.84403 -10.80710 -10.22955 -10.16566 -9.78528 -9.51465 -9.27134 -9.14825 -8.80320 -8.35710 -7.93159 -6.23891 -4.26971 0.80867 1.01186 1.93472 2.74154 2.86101 3.22104 3.32307 3.34460 3.38789 3.69250 4.06393 4.29190 4.52968 4.59871 4.65859 4.70306 4.85177 4.96721 5.06857 5.11039 5.27032 5.29778 5.47231 5.54691 5.63954 5.77885 5.88573 5.91895 6.03944 6.27193 6.33141 6.52471 6.55513 6.74220 6.95958 7.04362 7.22254 7.36565 7.47356 7.51845 8.20727 8.52030 8.73663 8.95398 9.36442 10.88160 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012095 B = 0.003511 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.363791 B = 7972.998302 C = 9796.041561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.083 3.917 3 C -0.151 4.151 4 O -0.298 6.298 5 C 0.300 3.700 6 N -0.508 5.508 7 C 0.123 3.877 8 C -0.103 4.103 9 Cl -0.054 7.054 10 C -0.044 4.044 11 C 0.130 3.870 12 N -0.679 5.679 13 C 0.696 3.304 14 O -0.585 6.585 15 N -0.707 5.707 16 C 0.253 3.747 17 H 0.051 0.949 18 C -0.163 4.163 19 C -0.536 4.536 20 H 0.081 0.919 21 C 0.079 3.921 22 N -0.891 5.891 23 Si 0.885 3.115 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.261 1.261 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.167 0.833 35 H 0.172 0.828 36 H 0.412 0.588 37 H 0.395 0.605 38 H 0.048 0.952 39 H 0.036 0.964 40 H 0.053 0.947 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.510 1.038 -21.483 23.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.027 3.973 3 C -0.209 4.209 4 O -0.205 6.205 5 C 0.117 3.883 6 N -0.231 5.231 7 C -0.033 4.033 8 C -0.133 4.133 9 Cl -0.026 7.026 10 C -0.073 4.073 11 C 0.030 3.970 12 N -0.328 5.328 13 C 0.396 3.604 14 O -0.464 6.464 15 N -0.358 5.358 16 C 0.150 3.850 17 H 0.069 0.931 18 C -0.221 4.221 19 C -0.574 4.574 20 H 0.099 0.901 21 C -0.124 4.124 22 N -0.528 5.528 23 Si 0.715 3.285 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.186 1.186 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.184 0.816 35 H 0.189 0.811 36 H 0.248 0.752 37 H 0.228 0.772 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.024 0.738 -21.926 24.120 hybrid contribution 0.634 -0.301 0.676 0.975 sum -9.389 0.438 -21.250 23.236 Atomic orbital electron populations 1.22227 0.94851 1.02896 1.02646 1.22362 0.94320 0.92815 0.87841 1.21915 1.02188 0.93748 1.03011 1.86294 1.80254 1.15176 1.38814 1.19631 0.95403 0.84938 0.88326 1.67365 1.21434 1.11356 1.22980 1.22218 0.95620 0.87370 0.98124 1.21696 1.08098 0.87101 0.96455 1.98371 1.95613 1.11272 1.97335 1.21667 0.95345 0.92195 0.98059 1.17336 1.03787 0.90442 0.85431 1.42539 1.34162 1.36976 1.19134 1.16101 0.79879 0.83541 0.80833 1.90869 1.54164 1.27635 1.73695 1.45460 1.36923 1.31016 1.22389 1.19060 0.81224 0.96262 0.88475 0.93142 1.22482 0.99316 1.01264 0.99040 1.21013 1.09772 1.36533 0.90118 0.90139 1.24810 0.97904 0.95032 0.94698 1.69862 1.36606 1.45140 1.01200 0.86878 0.83285 0.80736 0.77608 1.20281 1.22120 1.18570 0.91891 0.91121 0.91963 0.89242 0.91711 0.90510 0.91487 0.81577 0.81054 0.75205 0.77199 0.93344 0.94461 0.92807 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.53 37.16 0.35 -0.98 16 2 C 0.08 0.77 3.11 -26.73 -0.08 0.68 16 3 C -0.15 -1.14 9.56 37.16 0.36 -0.79 16 4 O -0.30 -3.54 9.34 -19.02 -0.18 -3.71 16 5 C 0.30 3.91 7.48 -16.96 -0.13 3.78 16 6 N -0.51 -6.09 8.64 -13.15 -0.11 -6.21 16 7 C 0.12 1.35 10.97 -17.50 -0.19 1.16 16 8 C -0.10 -1.28 6.34 -39.38 -0.25 -1.53 16 9 Cl -0.05 -0.62 28.98 -51.86 -1.50 -2.13 16 10 C -0.04 -0.65 8.61 -39.10 -0.34 -0.99 16 11 C 0.13 1.89 6.35 -83.32 -0.53 1.36 16 12 N -0.68 -10.01 5.21 -14.00 -0.07 -10.08 16 13 C 0.70 13.00 8.39 -86.92 -0.73 12.27 16 14 O -0.59 -12.75 13.45 5.28 0.07 -12.68 16 15 N -0.71 -13.65 5.07 -59.81 -0.30 -13.96 16 16 C 0.25 5.92 2.15 -69.08 -0.15 5.77 16 17 H 0.05 1.30 6.64 -51.93 -0.34 0.95 16 18 C -0.16 -3.60 8.96 37.16 0.33 -3.27 16 19 C -0.54 -14.21 9.31 -34.44 -0.32 -14.53 16 20 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 21 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 22 N -0.89 -26.06 13.96 55.43 0.77 -25.28 16 23 Si 0.89 21.50 24.37 -169.99 -4.14 17.36 16 24 H -0.28 -6.50 6.86 56.52 0.39 -6.11 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.87 6.99 -51.93 -0.36 0.51 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.17 2.86 6.26 -52.48 -0.33 2.53 16 36 H 0.41 4.98 8.59 -40.82 -0.35 4.63 16 37 H 0.39 6.62 8.56 -40.82 -0.35 6.28 16 38 H 0.05 1.11 3.25 -51.94 -0.17 0.94 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 355.52 15.07 5.36 5.36 Total: -1.00 -30.82 355.52 -7.19 -38.01 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.31 Total: 8.29 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -1.77 Total: 5.04 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.28 Total: -55.53 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.11 Total: -16.40 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.14 Total: 17.36 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.82 -7.19 -38.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455847518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.481 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds