Wall clock time and date at job start Tue Mar 31 2020 15:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46730 * 2 1 4 4 O 1.42893 * 109.47204 * 120.00133 * 2 1 3 5 5 C 1.35769 * 117.00157 * 90.00517 * 4 2 1 6 6 N 1.32136 * 119.70946 * 0.02562 * 5 4 2 7 7 C 1.32000 * 121.73365 * 179.97438 * 6 5 4 8 8 C 1.38185 * 120.94999 * 0.02562 * 7 6 5 9 9 Cl 1.73602 * 120.34269 * 179.97438 * 8 7 6 10 10 C 1.38835 * 119.31758 * 359.70459 * 8 7 6 11 11 C 1.38938 * 118.41668 * 0.53845 * 10 8 7 12 12 N 1.40172 * 120.49887 * 179.76449 * 11 10 8 13 13 C 1.34769 * 120.00163 * 34.11343 * 12 11 10 14 14 O 1.21596 * 120.00147 * 355.78928 * 13 12 11 15 15 N 1.34778 * 120.00102 * 175.78091 * 13 12 11 16 16 C 1.46494 * 120.00352 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.47209 * 325.00971 * 16 15 13 18 18 C 1.53007 * 109.46992 * 85.00230 * 16 15 13 19 19 C 1.50698 * 109.47662 * 205.00200 * 16 15 13 20 20 H 1.08002 * 119.99624 * 0.02562 * 19 16 15 21 21 C 1.37872 * 120.00107 * 180.27462 * 19 16 15 22 22 N 1.31520 * 119.99885 * 179.72339 * 21 19 16 23 23 Si 1.86799 * 120.00206 * 359.73095 * 21 19 16 24 24 H 1.48493 * 109.47309 * 89.99788 * 23 21 19 25 25 H 1.48500 * 109.46890 * 209.99683 * 23 21 19 26 26 H 1.48501 * 109.46871 * 329.99320 * 23 21 19 27 27 H 1.09002 * 109.47223 * 299.99199 * 1 2 3 28 28 H 1.09000 * 109.47316 * 60.00080 * 1 2 3 29 29 H 1.09001 * 109.46601 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47223 * 240.00801 * 2 1 3 31 31 H 1.09000 * 109.46931 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47222 * 300.00540 * 3 2 1 33 33 H 1.09002 * 109.46613 * 60.00427 * 3 2 1 34 34 H 1.08002 * 119.53158 * 179.97438 * 7 6 5 35 35 H 1.08007 * 120.79348 * 180.29535 * 10 8 7 36 36 H 0.97003 * 119.99242 * 214.12340 * 12 11 10 37 37 H 0.97002 * 119.99867 * 0.02562 * 15 13 12 38 38 H 1.08989 * 109.47408 * 179.97438 * 18 16 15 39 39 H 1.09002 * 109.47062 * 300.00236 * 18 16 15 40 40 H 1.09002 * 109.46563 * 59.99775 * 18 16 15 41 41 H 0.96993 * 119.99992 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2119 -2.0118 1.0651 6 7 1.9707 -2.6264 -0.0795 7 6 2.1571 -3.9252 -0.2229 8 6 2.6148 -4.6977 0.8275 9 17 2.8538 -6.4049 0.6216 10 6 2.8870 -4.0936 2.0475 11 6 2.6761 -2.7258 2.1696 12 7 2.9318 -2.0721 3.3829 13 6 3.9450 -2.4845 4.1701 14 8 4.5888 -3.4702 3.8660 15 7 4.2449 -1.8043 5.2943 16 6 5.3466 -2.2522 6.1497 17 1 5.3951 -3.3411 6.1394 18 6 6.6647 -1.6781 5.6261 19 6 5.1149 -1.7729 7.5596 20 1 4.2347 -1.1930 7.7949 21 6 6.0291 -2.0704 8.5478 22 7 5.8296 -1.6475 9.7770 23 14 7.5512 -3.0739 8.1408 24 1 8.6530 -2.1620 7.7412 25 1 7.9633 -3.8546 9.3349 26 1 7.2473 -4.0028 7.0228 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 3.1299 1.4427 -0.0005 32 1 1.6765 1.9565 -0.8900 33 1 1.6766 1.9563 0.8901 34 1 1.9482 -4.3912 -1.1746 35 1 3.2502 -4.6738 2.8830 36 1 2.3794 -1.3230 3.6560 37 1 3.7312 -1.0181 5.5371 38 1 7.4843 -2.0110 6.2627 39 1 6.8323 -2.0248 4.6063 40 1 6.6162 -0.5892 5.6363 41 1 6.4730 -1.8564 10.4722 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455847518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:05 Heat of formation + Delta-G solvation = -54.908865 kcal Electronic energy + Delta-G solvation = -25566.382203 eV Core-core repulsion = 21700.193601 eV Total energy + Delta-G solvation = -3866.188602 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.29592 -40.94741 -39.37781 -37.60309 -37.22546 -36.02992 -34.48550 -34.11453 -32.86365 -31.63218 -30.06077 -28.12824 -27.22337 -25.65398 -24.54312 -23.13817 -22.21487 -21.69812 -20.21191 -19.61154 -18.95033 -18.30844 -17.80026 -17.24012 -16.84285 -16.59382 -16.22739 -15.96669 -15.51642 -15.32833 -15.09578 -14.87055 -14.71690 -14.31977 -14.12811 -13.90651 -13.72100 -13.48159 -13.27534 -13.21357 -13.04439 -12.77453 -12.63772 -12.36334 -12.14697 -11.99970 -11.87831 -11.72821 -11.61756 -11.38150 -11.28059 -10.88752 -10.81879 -10.30331 -9.94730 -9.04731 -8.37521 -6.43668 -0.18856 -0.04652 0.97395 1.29155 1.37503 1.46606 1.53497 1.85119 2.01043 2.27079 2.53514 2.98879 3.11191 3.24451 3.67210 3.79518 3.93851 3.98144 4.06108 4.29711 4.37732 4.44806 4.54595 4.69682 4.73435 4.81737 4.84337 4.88598 4.91814 4.96520 5.00465 5.25053 5.27565 5.29803 5.40175 5.43916 5.58956 5.84611 6.12390 6.23427 6.54101 6.58534 7.02883 7.21203 7.49292 8.77607 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012095 B = 0.003511 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.363791 B = 7972.998302 C = 9796.041561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.075 3.925 3 C -0.148 4.148 4 O -0.305 6.305 5 C 0.306 3.694 6 N -0.506 5.506 7 C 0.141 3.859 8 C -0.109 4.109 9 Cl -0.046 7.046 10 C -0.055 4.055 11 C 0.104 3.896 12 N -0.663 5.663 13 C 0.699 3.301 14 O -0.617 6.617 15 N -0.706 5.706 16 C 0.261 3.739 17 H 0.028 0.972 18 C -0.156 4.156 19 C -0.533 4.533 20 H 0.058 0.942 21 C 0.031 3.969 22 N -0.933 5.933 23 Si 0.937 3.063 24 H -0.260 1.260 25 H -0.293 1.293 26 H -0.261 1.261 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.203 0.797 35 H 0.148 0.852 36 H 0.424 0.576 37 H 0.407 0.593 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.873 1.458 -24.102 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 C -0.205 4.205 4 O -0.213 6.213 5 C 0.124 3.876 6 N -0.229 5.229 7 C -0.016 4.016 8 C -0.139 4.139 9 Cl -0.017 7.017 10 C -0.084 4.084 11 C 0.005 3.995 12 N -0.313 5.313 13 C 0.400 3.600 14 O -0.498 6.498 15 N -0.358 5.358 16 C 0.156 3.844 17 H 0.045 0.955 18 C -0.214 4.214 19 C -0.571 4.571 20 H 0.077 0.923 21 C -0.169 4.169 22 N -0.571 5.571 23 Si 0.765 3.235 24 H -0.186 1.186 25 H -0.220 1.220 26 H -0.185 1.185 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.219 0.781 35 H 0.166 0.834 36 H 0.263 0.737 37 H 0.242 0.758 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.434 1.200 -24.584 26.734 hybrid contribution 0.607 -0.428 1.373 1.561 sum -9.828 0.772 -23.211 25.218 Atomic orbital electron populations 1.22194 0.93675 1.02459 1.03746 1.22650 0.95294 0.93358 0.86749 1.21935 1.01626 0.92731 1.04208 1.86296 1.80138 1.14577 1.40296 1.19613 0.94516 0.85473 0.87999 1.67515 1.21434 1.11734 1.22248 1.22791 0.93168 0.86851 0.98798 1.21736 1.08352 0.87714 0.96053 1.98374 1.95590 1.10537 1.97236 1.21544 0.95977 0.92455 0.98390 1.17442 1.05768 0.90647 0.85664 1.42199 1.33116 1.37088 1.18886 1.16088 0.80286 0.82943 0.80714 1.90851 1.55536 1.28941 1.74452 1.45136 1.36568 1.31638 1.22487 1.18690 0.83225 0.94885 0.87630 0.95450 1.22372 0.98010 1.01883 0.99165 1.21220 1.08700 1.35397 0.91813 0.92347 1.25515 1.00718 0.96096 0.94546 1.69967 1.37978 1.46965 1.02239 0.86029 0.80571 0.79642 0.77287 1.18582 1.22030 1.18520 0.91843 0.88990 0.93117 0.89546 0.92590 0.88148 0.91459 0.78070 0.83449 0.73749 0.75798 0.93926 0.93674 0.91675 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.53 71.98 0.69 -1.52 16 2 C 0.07 1.24 3.11 30.60 0.10 1.33 16 3 C -0.15 -1.90 9.56 71.99 0.69 -1.22 16 4 O -0.31 -6.80 9.34 -90.96 -0.85 -7.65 16 5 C 0.31 7.58 7.48 84.94 0.64 8.22 16 6 N -0.51 -11.05 8.64 -308.38 -2.67 -13.71 16 7 C 0.14 2.74 10.97 84.65 0.93 3.67 16 8 C -0.11 -2.56 6.34 22.40 0.14 -2.42 16 9 Cl -0.05 -0.99 28.98 -2.72 -0.08 -1.07 16 10 C -0.06 -1.62 8.61 22.58 0.19 -1.42 16 11 C 0.10 2.96 6.35 38.27 0.24 3.20 16 12 N -0.66 -19.35 5.21 -316.48 -1.65 -21.00 16 13 C 0.70 26.14 8.39 179.06 1.50 27.64 16 14 O -0.62 -27.19 13.45 -4.02 -0.05 -27.24 16 15 N -0.71 -27.23 5.07 -461.41 -2.34 -29.57 16 16 C 0.26 12.17 2.15 44.25 0.10 12.27 16 17 H 0.03 1.42 6.64 -2.39 -0.02 1.41 16 18 C -0.16 -6.73 8.96 71.98 0.65 -6.09 16 19 C -0.53 -28.55 9.31 25.60 0.24 -28.32 16 20 H 0.06 3.32 7.98 -2.91 -0.02 3.29 16 21 C 0.03 1.74 5.45 84.65 0.46 2.20 16 22 N -0.93 -55.29 13.96 21.45 0.30 -54.99 16 23 Si 0.94 44.19 24.37 68.60 1.67 45.86 16 24 H -0.26 -11.53 6.86 99.48 0.68 -10.85 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.26 -12.19 6.54 99.48 0.65 -11.54 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 1.49 6.99 -2.39 -0.02 1.47 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 35 H 0.15 5.07 6.26 -2.91 -0.02 5.06 16 36 H 0.42 9.99 8.59 -92.71 -0.80 9.20 16 37 H 0.41 13.57 8.56 -92.71 -0.79 12.78 16 38 H 0.04 1.88 3.25 -2.39 -0.01 1.87 16 39 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 40 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -66.37 355.52 0.31 -66.06 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -0.58 Total: 25.76 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 6.56 Total: 17.54 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -6.36 Total: -119.27 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.90 Total: -34.89 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.67 Total: 45.86 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -66.37 0.31 -66.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455847518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.155 kcal (2) G-P(sol) polarization free energy of solvation -66.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds