Wall clock time and date at job start Tue Mar 31 2020 14:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47070 * 2 1 4 4 O 1.42906 * 109.46790 * 119.99502 * 2 1 3 5 5 C 1.35772 * 116.99498 * 150.00274 * 4 2 1 6 6 N 1.32134 * 119.71522 * 359.72308 * 5 4 2 7 7 C 1.32009 * 121.73181 * 179.75696 * 6 5 4 8 8 C 1.38174 * 120.94831 * 0.52580 * 7 6 5 9 9 Cl 1.73603 * 120.33851 * 179.77024 * 8 7 6 10 10 C 1.38837 * 119.32507 * 359.74384 * 8 7 6 11 11 C 1.38939 * 118.41141 * 0.02562 * 10 8 7 12 12 N 1.40165 * 120.49893 * 179.97438 * 11 10 8 13 13 C 1.34782 * 120.00225 * 325.80519 * 12 11 10 14 14 O 1.21595 * 119.99474 * 4.22109 * 13 12 11 15 15 N 1.34771 * 120.00409 * 184.21848 * 13 12 11 16 16 C 1.46506 * 119.99740 * 0.02562 * 15 13 12 17 17 C 1.46490 * 120.00165 * 180.02562 * 15 13 12 18 18 C 1.50694 * 109.47577 * 90.00230 * 17 15 13 19 19 H 1.08010 * 119.99698 * 359.97438 * 18 17 15 20 20 C 1.37880 * 120.00600 * 180.02562 * 18 17 15 21 21 N 1.31516 * 119.99793 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00118 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46739 * 60.00303 * 22 20 18 24 24 H 1.48499 * 109.46773 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47364 * 300.00128 * 22 20 18 26 26 H 1.09001 * 109.47301 * 300.00041 * 1 2 3 27 27 H 1.09006 * 109.47078 * 60.00555 * 1 2 3 28 28 H 1.09003 * 109.47397 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47372 * 239.99412 * 2 1 3 30 30 H 1.09002 * 109.47173 * 299.99505 * 3 2 1 31 31 H 1.08999 * 109.47503 * 59.99492 * 3 2 1 32 32 H 1.09002 * 109.47538 * 179.97438 * 3 2 1 33 33 H 1.07999 * 119.52288 * 180.25054 * 7 6 5 34 34 H 1.07994 * 120.79545 * 180.02562 * 10 8 7 35 35 H 0.97005 * 120.00030 * 145.79902 * 12 11 10 36 36 H 1.09002 * 109.47175 * 89.99803 * 16 15 13 37 37 H 1.09000 * 109.46775 * 209.99887 * 16 15 13 38 38 H 1.09003 * 109.47208 * 329.99776 * 16 15 13 39 39 H 1.09003 * 109.47356 * 210.00333 * 17 15 13 40 40 H 1.09002 * 109.47048 * 329.99880 * 17 15 13 41 41 H 0.96992 * 120.00088 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.1995 -1.3133 1.0653 6 7 3.8570 -1.2950 -0.0806 7 6 5.0220 -1.8994 -0.2224 8 6 5.5974 -2.5887 0.8279 9 17 7.1274 -3.3829 0.6222 10 6 4.9397 -2.6393 2.0496 11 6 3.7175 -1.9896 2.1698 12 7 3.0157 -2.0129 3.3829 13 6 3.0701 -3.1042 4.1720 14 8 3.7880 -4.0378 3.8697 15 7 2.3287 -3.1605 5.2961 16 6 1.4633 -2.0358 5.6600 17 6 2.3882 -4.3464 6.1541 18 6 3.4761 -4.1690 7.1817 19 1 4.0647 -3.2635 7.1941 20 6 3.7208 -5.1630 8.1054 21 7 3.0045 -6.2658 8.0899 22 14 5.0698 -4.9433 9.3787 23 1 4.7773 -3.7468 10.2082 24 1 5.1300 -6.1454 10.2484 25 1 6.3741 -4.7626 8.6920 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 5.5306 -1.8582 -1.1742 34 1 5.3679 -3.1709 2.8864 35 1 2.4910 -1.2435 3.6545 36 1 0.4765 -2.1793 5.2198 37 1 1.3730 -1.9831 6.7450 38 1 1.8966 -1.1081 5.2860 39 1 1.4307 -4.4789 6.6578 40 1 2.6031 -5.2248 5.5454 41 1 3.1764 -6.9649 8.7399 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455853087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:18 Heat of formation + Delta-G solvation = -27.871712 kcal Electronic energy + Delta-G solvation = -25749.522427 eV Core-core repulsion = 21884.506244 eV Total energy + Delta-G solvation = -3865.016183 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.12263 -39.51189 -38.36409 -36.50570 -35.33903 -34.64110 -33.31167 -32.64615 -31.41593 -29.41918 -27.70651 -27.49419 -25.89819 -24.46646 -23.51686 -22.39023 -21.37267 -19.65344 -18.76348 -18.07933 -17.01639 -16.76470 -16.46408 -15.86984 -15.65186 -14.95889 -14.86248 -14.62469 -14.35932 -14.01492 -13.70178 -13.29190 -13.14073 -12.97962 -12.73113 -12.69703 -12.55482 -12.34177 -12.19557 -11.94392 -11.78911 -11.29020 -11.22645 -11.09424 -10.94466 -10.85264 -10.70340 -10.58604 -10.18827 -10.01022 -9.69692 -9.38511 -8.99788 -8.44928 -8.02735 -7.64363 -6.06012 -4.11137 0.91184 1.12273 2.04465 2.81784 3.01171 3.31254 3.35951 3.38974 3.45976 3.85965 4.14452 4.34144 4.47694 4.62410 4.73360 4.74104 4.92711 5.02416 5.09744 5.28196 5.29312 5.36627 5.48150 5.49557 5.58357 5.71308 5.83389 5.84988 5.92699 5.97484 6.09990 6.19288 6.66490 6.70042 7.12828 7.29156 7.43626 7.58211 7.61415 7.90877 8.19836 8.47770 8.88440 9.12772 9.54139 11.01885 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011750 B = 0.003743 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.493813 B = 7479.525769 C = 9373.229631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.082 3.918 3 C -0.168 4.168 4 O -0.299 6.299 5 C 0.296 3.704 6 N -0.508 5.508 7 C 0.121 3.879 8 C -0.101 4.101 9 Cl -0.055 7.055 10 C -0.045 4.045 11 C 0.132 3.868 12 N -0.682 5.682 13 C 0.698 3.302 14 O -0.569 6.569 15 N -0.608 5.608 16 C 0.083 3.917 17 C 0.260 3.740 18 C -0.529 4.529 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.167 0.833 34 H 0.173 0.827 35 H 0.409 0.591 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.036 0.964 40 H 0.046 0.954 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 14.743 -17.051 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.026 3.974 3 C -0.226 4.226 4 O -0.207 6.207 5 C 0.114 3.886 6 N -0.232 5.232 7 C -0.036 4.036 8 C -0.131 4.131 9 Cl -0.026 7.026 10 C -0.073 4.073 11 C 0.032 3.968 12 N -0.333 5.333 13 C 0.399 3.601 14 O -0.446 6.446 15 N -0.342 5.342 16 C -0.061 4.061 17 C 0.141 3.859 18 C -0.568 4.568 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.533 5.533 22 Si 0.726 3.274 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.201 1.201 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.184 0.816 34 H 0.191 0.809 35 H 0.247 0.753 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.235 14.227 -17.532 22.688 hybrid contribution 0.960 0.047 1.427 1.720 sum -1.275 14.273 -16.106 21.558 Atomic orbital electron populations 1.21908 0.92831 1.03159 1.02913 1.22345 0.94457 0.92593 0.87976 1.22223 1.02159 0.95661 1.02547 1.86288 1.31111 1.64548 1.38709 1.19603 0.86955 0.93700 0.88365 1.67342 1.09664 1.23228 1.22920 1.22188 0.90257 0.93054 0.98121 1.21699 0.91665 1.03358 0.96425 1.98370 1.28065 1.78835 1.97331 1.21720 0.90842 0.96636 0.98096 1.17367 0.92133 1.01748 0.85555 1.42772 1.52626 1.18728 1.19135 1.15923 0.81634 0.81894 0.80601 1.90888 1.43031 1.37196 1.73444 1.47491 1.43593 1.20644 1.22520 1.21618 0.93576 0.88354 1.02557 1.19280 0.97248 0.81291 0.88131 1.21404 1.18049 1.03339 1.14021 0.92488 1.24922 0.96438 0.94902 0.97724 1.69916 1.40054 1.06895 1.36441 0.86554 0.82413 0.77417 0.81007 1.20276 1.21161 1.20146 0.91572 0.90558 0.91714 0.89228 0.91165 0.91975 0.91957 0.81639 0.80925 0.75330 0.93430 0.90131 0.93136 0.94642 0.93584 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.56 37.16 0.36 -0.81 16 2 C 0.08 0.80 3.11 -26.73 -0.08 0.72 16 3 C -0.17 -1.38 9.53 37.15 0.35 -1.03 16 4 O -0.30 -3.75 9.33 -19.03 -0.18 -3.92 16 5 C 0.30 4.16 7.48 -16.96 -0.13 4.03 16 6 N -0.51 -6.54 8.64 -13.15 -0.11 -6.66 16 7 C 0.12 1.44 10.97 -17.50 -0.19 1.25 16 8 C -0.10 -1.39 6.34 -39.38 -0.25 -1.64 16 9 Cl -0.05 -0.70 28.98 -51.86 -1.50 -2.20 16 10 C -0.04 -0.73 8.61 -39.10 -0.34 -1.07 16 11 C 0.13 2.11 6.35 -83.32 -0.53 1.58 16 12 N -0.68 -11.26 5.08 -14.00 -0.07 -11.33 16 13 C 0.70 14.67 8.14 -86.92 -0.71 13.96 16 14 O -0.57 -14.11 13.37 5.28 0.07 -14.03 16 15 N -0.61 -12.74 2.86 -188.74 -0.54 -13.28 16 16 C 0.08 1.28 10.24 59.85 0.61 1.89 16 17 C 0.26 6.69 5.16 -5.20 -0.03 6.66 16 18 C -0.53 -14.78 9.39 -34.44 -0.32 -15.11 16 19 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 22 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.92 6.98 -51.93 -0.36 0.55 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.17 3.27 6.27 -52.49 -0.33 2.95 16 35 H 0.41 5.63 6.27 -40.82 -0.26 5.38 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 38 H 0.05 0.63 6.30 -51.93 -0.33 0.30 16 39 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 40 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -32.23 363.31 -7.92 -40.15 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.43 Total: 2.60 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: -1.35 Total: 12.10 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.01 Total: -56.84 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.11 Total: -17.96 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.23 -7.92 -40.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455853087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.281 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds