Wall clock time and date at job start Tue Mar 31 2020 14:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47070 * 2 1 4 4 O 1.42906 * 109.46790 * 119.99502 * 2 1 3 5 5 C 1.35772 * 116.99498 * 150.00274 * 4 2 1 6 6 N 1.32134 * 119.71522 * 359.72308 * 5 4 2 7 7 C 1.32009 * 121.73181 * 179.75696 * 6 5 4 8 8 C 1.38174 * 120.94831 * 0.52580 * 7 6 5 9 9 Cl 1.73603 * 120.33851 * 179.77024 * 8 7 6 10 10 C 1.38837 * 119.32507 * 359.74384 * 8 7 6 11 11 C 1.38939 * 118.41141 * 0.02562 * 10 8 7 12 12 N 1.40165 * 120.49893 * 179.97438 * 11 10 8 13 13 C 1.34782 * 120.00225 * 325.80519 * 12 11 10 14 14 O 1.21595 * 119.99474 * 4.22109 * 13 12 11 15 15 N 1.34771 * 120.00409 * 184.21848 * 13 12 11 16 16 C 1.46506 * 119.99740 * 0.02562 * 15 13 12 17 17 C 1.46490 * 120.00165 * 180.02562 * 15 13 12 18 18 C 1.50694 * 109.47577 * 90.00230 * 17 15 13 19 19 H 1.08010 * 119.99698 * 359.97438 * 18 17 15 20 20 C 1.37880 * 120.00600 * 180.02562 * 18 17 15 21 21 N 1.31516 * 119.99793 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00118 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46739 * 60.00303 * 22 20 18 24 24 H 1.48499 * 109.46773 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47364 * 300.00128 * 22 20 18 26 26 H 1.09001 * 109.47301 * 300.00041 * 1 2 3 27 27 H 1.09006 * 109.47078 * 60.00555 * 1 2 3 28 28 H 1.09003 * 109.47397 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47372 * 239.99412 * 2 1 3 30 30 H 1.09002 * 109.47173 * 299.99505 * 3 2 1 31 31 H 1.08999 * 109.47503 * 59.99492 * 3 2 1 32 32 H 1.09002 * 109.47538 * 179.97438 * 3 2 1 33 33 H 1.07999 * 119.52288 * 180.25054 * 7 6 5 34 34 H 1.07994 * 120.79545 * 180.02562 * 10 8 7 35 35 H 0.97005 * 120.00030 * 145.79902 * 12 11 10 36 36 H 1.09002 * 109.47175 * 89.99803 * 16 15 13 37 37 H 1.09000 * 109.46775 * 209.99887 * 16 15 13 38 38 H 1.09003 * 109.47208 * 329.99776 * 16 15 13 39 39 H 1.09003 * 109.47356 * 210.00333 * 17 15 13 40 40 H 1.09002 * 109.47048 * 329.99880 * 17 15 13 41 41 H 0.96992 * 120.00088 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.1995 -1.3133 1.0653 6 7 3.8570 -1.2950 -0.0806 7 6 5.0220 -1.8994 -0.2224 8 6 5.5974 -2.5887 0.8279 9 17 7.1274 -3.3829 0.6222 10 6 4.9397 -2.6393 2.0496 11 6 3.7175 -1.9896 2.1698 12 7 3.0157 -2.0129 3.3829 13 6 3.0701 -3.1042 4.1720 14 8 3.7880 -4.0378 3.8697 15 7 2.3287 -3.1605 5.2961 16 6 1.4633 -2.0358 5.6600 17 6 2.3882 -4.3464 6.1541 18 6 3.4761 -4.1690 7.1817 19 1 4.0647 -3.2635 7.1941 20 6 3.7208 -5.1630 8.1054 21 7 3.0045 -6.2658 8.0899 22 14 5.0698 -4.9433 9.3787 23 1 4.7773 -3.7468 10.2082 24 1 5.1300 -6.1454 10.2484 25 1 6.3741 -4.7626 8.6920 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 5.5306 -1.8582 -1.1742 34 1 5.3679 -3.1709 2.8864 35 1 2.4910 -1.2435 3.6545 36 1 0.4765 -2.1793 5.2198 37 1 1.3730 -1.9831 6.7450 38 1 1.8966 -1.1081 5.2860 39 1 1.4307 -4.4789 6.6578 40 1 2.6031 -5.2248 5.5454 41 1 3.1764 -6.9649 8.7399 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455853087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:17 Heat of formation + Delta-G solvation = -49.306981 kcal Electronic energy + Delta-G solvation = -25750.451930 eV Core-core repulsion = 21884.506244 eV Total energy + Delta-G solvation = -3865.945686 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.30629 -40.95210 -39.37251 -37.57143 -36.91550 -36.18170 -34.70913 -34.10071 -32.63347 -30.68850 -29.47307 -28.11479 -27.42561 -25.77935 -24.96969 -23.87768 -22.24388 -21.17091 -19.93368 -19.27359 -18.68865 -18.41846 -17.83353 -17.01412 -16.87725 -16.52387 -16.41250 -15.82829 -15.50320 -15.27846 -14.85642 -14.74709 -14.44450 -14.31060 -13.92943 -13.86313 -13.49580 -13.46925 -13.21105 -13.16866 -13.03589 -12.81928 -12.63221 -12.54372 -12.36071 -12.19027 -12.00186 -11.86105 -11.73188 -11.67590 -11.32146 -10.81254 -10.62857 -10.26194 -9.55777 -9.01621 -8.20961 -6.35737 -0.18797 -0.05209 0.97367 1.37814 1.41845 1.48441 1.57486 1.84954 2.05301 2.38843 2.55001 2.92377 3.08959 3.18489 3.66559 3.79859 3.89608 3.99395 4.07464 4.27251 4.31003 4.38623 4.63494 4.74950 4.79935 4.83939 4.86236 4.89909 4.92986 4.94567 5.02126 5.20457 5.26383 5.31416 5.44576 5.52666 5.73248 5.96407 6.05867 6.12557 6.53426 6.72291 6.94283 7.30394 7.53215 8.85511 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011750 B = 0.003743 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.493813 B = 7479.525769 C = 9373.229631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 C -0.163 4.163 4 O -0.305 6.305 5 C 0.308 3.692 6 N -0.503 5.503 7 C 0.141 3.859 8 C -0.108 4.108 9 Cl -0.047 7.047 10 C -0.058 4.058 11 C 0.103 3.897 12 N -0.663 5.663 13 C 0.695 3.305 14 O -0.616 6.616 15 N -0.616 5.616 16 C 0.078 3.922 17 C 0.276 3.724 18 C -0.544 4.544 19 H 0.053 0.947 20 C 0.010 3.990 21 N -0.927 5.927 22 Si 0.965 3.035 23 H -0.260 1.260 24 H -0.279 1.279 25 H -0.279 1.279 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.205 0.795 34 H 0.141 0.859 35 H 0.422 0.578 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.031 0.969 40 H 0.001 0.999 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 17.187 -18.277 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.018 3.982 3 C -0.220 4.220 4 O -0.212 6.212 5 C 0.125 3.875 6 N -0.227 5.227 7 C -0.015 4.015 8 C -0.138 4.138 9 Cl -0.019 7.019 10 C -0.087 4.087 11 C 0.004 3.996 12 N -0.315 5.315 13 C 0.396 3.604 14 O -0.496 6.496 15 N -0.350 5.350 16 C -0.064 4.064 17 C 0.155 3.845 18 C -0.582 4.582 19 H 0.071 0.929 20 C -0.189 4.189 21 N -0.567 5.567 22 Si 0.790 3.210 23 H -0.185 1.185 24 H -0.204 1.204 25 H -0.205 1.205 26 H 0.088 0.912 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.221 0.779 34 H 0.158 0.842 35 H 0.263 0.737 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.019 0.981 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.473 16.753 -18.781 25.289 hybrid contribution 0.996 -0.665 1.655 2.043 sum -1.477 16.088 -17.127 23.544 Atomic orbital electron populations 1.21930 0.91203 1.02980 1.04304 1.22675 0.95693 0.93113 0.86700 1.22191 1.01286 0.94728 1.03826 1.86292 1.30223 1.64363 1.40350 1.19543 0.87309 0.92780 0.87825 1.67517 1.09857 1.23250 1.22063 1.22787 0.89465 0.90594 0.98703 1.21740 0.92078 1.03993 0.95989 1.98370 1.27490 1.78794 1.97222 1.21532 0.91726 0.97064 0.98353 1.17484 0.92515 1.03658 0.85928 1.42361 1.52565 1.17692 1.18890 1.16055 0.81102 0.82368 0.80838 1.90854 1.44894 1.39250 1.74639 1.47346 1.44590 1.20868 1.22171 1.21903 0.94040 0.87619 1.02839 1.18733 0.96354 0.81930 0.87508 1.21677 1.18576 1.03340 1.14634 0.92865 1.25808 0.98725 0.94503 0.99844 1.70034 1.41610 1.07669 1.37362 0.85501 0.78909 0.78142 0.78456 1.18487 1.20377 1.20461 0.91234 0.88114 0.92677 0.89662 0.88937 0.91674 0.93222 0.77875 0.84172 0.73745 0.90967 0.90404 0.89916 0.95099 0.98054 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.56 71.98 0.69 -1.20 16 2 C 0.07 1.25 3.11 30.59 0.10 1.35 16 3 C -0.16 -2.23 9.53 71.98 0.69 -1.54 16 4 O -0.30 -7.12 9.33 -91.00 -0.85 -7.97 16 5 C 0.31 8.26 7.48 84.95 0.64 8.90 16 6 N -0.50 -11.93 8.64 -308.38 -2.66 -14.59 16 7 C 0.14 3.07 10.97 84.65 0.93 4.00 16 8 C -0.11 -2.91 6.34 22.40 0.14 -2.77 16 9 Cl -0.05 -1.18 28.98 -2.72 -0.08 -1.26 16 10 C -0.06 -1.96 8.61 22.58 0.19 -1.77 16 11 C 0.10 3.31 6.35 38.27 0.24 3.55 16 12 N -0.66 -21.97 5.08 -316.47 -1.61 -23.58 16 13 C 0.69 30.16 8.14 179.05 1.46 31.61 16 14 O -0.62 -32.34 13.37 -4.01 -0.05 -32.39 16 15 N -0.62 -26.36 2.86 -869.31 -2.48 -28.84 16 16 C 0.08 2.32 10.24 127.77 1.31 3.62 16 17 C 0.28 14.84 5.16 85.63 0.44 15.28 16 18 C -0.54 -31.16 9.39 25.60 0.24 -30.92 16 19 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 20 C 0.01 0.60 5.46 84.66 0.46 1.06 16 21 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 22 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 1.54 6.98 -2.39 -0.02 1.52 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 34 H 0.14 5.70 6.27 -2.91 -0.02 5.68 16 35 H 0.42 11.17 6.27 -92.70 -0.58 10.59 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 2.36 8.07 -2.39 -0.02 2.34 16 38 H 0.08 1.89 6.30 -2.39 -0.02 1.88 16 39 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 40 H 0.00 0.08 7.42 -2.39 -0.02 0.06 16 41 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -72.90 363.31 2.58 -70.32 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.48 Total: 15.84 kcal Atomic # 6 Polarization: 23.65 SS G_CDS: 7.52 Total: 31.18 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -6.47 Total: -122.58 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -0.90 Total: -40.36 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -72.90 2.58 -70.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455853087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.012 kcal (2) G-P(sol) polarization free energy of solvation -72.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds