Wall clock time and date at job start Tue Mar 31 2020 15:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00121 * 2 1 4 4 C 1.52992 * 109.47396 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47374 * 64.99636 * 4 3 2 6 6 C 1.37094 * 120.00166 * 270.00393 * 5 4 3 7 7 H 1.08003 * 120.00148 * 145.15813 * 6 5 4 8 8 C 1.38944 * 120.00115 * 325.15875 * 6 5 4 9 9 N 1.31412 * 119.99951 * 337.41232 * 8 6 5 10 10 Si 1.86804 * 120.00073 * 157.40787 * 8 6 5 11 11 H 1.48499 * 109.47270 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47077 * 120.00244 * 10 8 6 13 13 H 1.48498 * 109.47073 * 239.99937 * 10 8 6 14 14 C 1.34780 * 119.99681 * 89.99949 * 5 4 3 15 15 O 1.21290 * 120.00164 * 4.90436 * 14 5 4 16 16 C 1.50697 * 119.99718 * 184.90047 * 14 5 4 17 17 C 1.53006 * 109.47188 * 177.67361 * 16 14 5 18 18 S 1.81398 * 109.47406 * 180.02562 * 17 16 14 19 19 C 1.76194 * 103.00081 * 179.97438 * 18 17 16 20 20 C 1.38949 * 120.05535 * 0.27606 * 19 18 17 21 21 C 1.38095 * 119.94564 * 180.21373 * 20 19 18 22 22 C 1.38485 * 120.05189 * 359.50953 * 21 20 19 23 23 F 1.35103 * 119.94048 * 180.28090 * 22 21 20 24 24 C 1.38474 * 120.11288 * 0.25808 * 22 21 20 25 25 C 1.38099 * 120.05404 * 359.97438 * 24 22 21 26 26 H 1.09002 * 109.47061 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47013 * 300.00098 * 1 2 3 28 28 H 1.09002 * 109.47187 * 60.00050 * 1 2 3 29 29 H 1.09001 * 109.47178 * 59.99854 * 3 2 1 30 30 H 1.09004 * 109.46890 * 300.00077 * 3 2 1 31 31 H 1.08999 * 109.46983 * 305.00184 * 4 3 2 32 32 H 1.08998 * 109.47512 * 184.99467 * 4 3 2 33 33 H 0.97004 * 119.99504 * 184.98482 * 9 8 6 34 34 H 1.09004 * 109.46982 * 57.67894 * 16 14 5 35 35 H 1.09000 * 109.47579 * 297.67573 * 16 14 5 36 36 H 1.09003 * 109.47154 * 59.99733 * 17 16 14 37 37 H 1.09000 * 109.47034 * 300.00546 * 17 16 14 38 38 H 1.07997 * 120.02304 * 359.97277 * 20 19 18 39 39 H 1.07996 * 119.97554 * 179.79492 * 21 20 19 40 40 H 1.08005 * 119.97530 * 179.97438 * 24 22 21 41 41 H 1.08006 * 120.02756 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0969 -0.7986 -1.3370 7 1 3.8637 -1.3054 -2.2617 8 6 4.5199 -1.5280 -0.2326 9 7 5.2124 -0.9403 0.7170 10 14 4.1039 -3.3442 -0.0977 11 1 3.3222 -3.7628 -1.2889 12 1 5.3586 -4.1354 -0.0266 13 1 3.3010 -3.5783 1.1293 14 6 4.2615 1.3337 -2.3219 15 8 4.2405 2.5423 -2.2223 16 6 4.6073 0.6922 -3.6409 17 6 4.8297 1.7795 -4.6941 18 16 5.2452 1.0074 -6.2821 19 6 5.4609 2.3911 -7.3513 20 6 5.3030 3.6813 -6.8602 21 6 5.4682 4.7640 -7.7013 22 6 5.8010 4.5651 -9.0307 23 9 5.9677 5.6262 -9.8502 24 6 5.9637 3.2804 -9.5214 25 6 5.7948 2.1942 -8.6855 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8514 0.5682 0.8409 32 1 3.9785 2.1765 0.0888 33 1 5.5695 -1.4636 1.4516 34 1 3.7893 0.0439 -3.9551 35 1 5.5169 0.1018 -3.5305 36 1 5.6477 2.4279 -4.3799 37 1 3.9201 2.3699 -4.8045 38 1 5.0474 3.8370 -5.8226 39 1 5.3423 5.7669 -7.3209 40 1 6.2228 3.1278 -10.5588 41 1 5.9222 1.1924 -9.0686 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457178382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:31 Heat of formation + Delta-G solvation = -98.060342 kcal Electronic energy + Delta-G solvation = -24731.135545 eV Core-core repulsion = 20845.199500 eV Total energy + Delta-G solvation = -3885.936046 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -49.01461 -38.91024 -38.79459 -37.03322 -34.81789 -32.50374 -31.61725 -31.27622 -30.66307 -29.22538 -25.91472 -25.03753 -24.27247 -22.97633 -22.83143 -21.40718 -19.10517 -18.04704 -17.31579 -16.99640 -16.46994 -16.24693 -15.72871 -15.52899 -15.45868 -14.97060 -14.72394 -14.61183 -14.36782 -14.23019 -13.88032 -13.75440 -13.45034 -13.18574 -12.85033 -12.58476 -12.05174 -11.86982 -11.77699 -11.53600 -11.27360 -11.18607 -11.16088 -10.99850 -10.75513 -10.67679 -10.33894 -10.14282 -10.03280 -9.61896 -9.33945 -9.20750 -9.01040 -8.52956 -7.54782 -7.35104 -6.36819 -4.00663 0.86300 1.02872 1.52967 2.48915 3.14415 3.26814 3.30378 3.33544 3.79171 4.10858 4.13812 4.47918 4.52727 4.66450 4.70256 5.02778 5.04931 5.14596 5.29223 5.31068 5.53033 5.63142 5.67762 5.69074 5.81646 5.92584 5.93984 5.96815 6.00317 6.02818 6.04398 6.21633 6.31958 6.33468 6.45156 6.63420 6.69135 7.24925 7.48607 7.77296 7.95932 8.33997 9.08020 9.44944 9.86536 10.66150 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018028 B = 0.002670 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.792705 B =10483.556590 C =11218.377062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.055 3.945 4 C 0.108 3.892 5 N -0.423 5.423 6 C -0.329 4.329 7 H 0.089 0.911 8 C 0.053 3.947 9 N -0.862 5.862 10 Si 0.917 3.083 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.279 1.279 14 C 0.470 3.530 15 O -0.614 6.614 16 C -0.104 4.104 17 C -0.082 4.082 18 S -0.113 6.113 19 C -0.088 4.088 20 C -0.105 4.105 21 C -0.131 4.131 22 C 0.082 3.918 23 F -0.143 7.143 24 C -0.136 4.136 25 C -0.077 4.077 26 H 0.077 0.923 27 H 0.030 0.970 28 H 0.031 0.969 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.269 0.731 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 4.421 -11.798 12.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.016 4.016 5 N -0.140 5.140 6 C -0.457 4.457 7 H 0.107 0.893 8 C -0.153 4.153 9 N -0.499 5.499 10 Si 0.744 3.256 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.205 1.205 14 C 0.257 3.743 15 O -0.502 6.502 16 C -0.145 4.145 17 C -0.231 4.231 18 S 0.133 5.867 19 C -0.201 4.201 20 C -0.129 4.129 21 C -0.152 4.152 22 C 0.060 3.940 23 F -0.121 7.121 24 C -0.157 4.157 25 C -0.101 4.101 26 H 0.096 0.904 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.136 0.864 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.890 3.552 -11.655 12.330 hybrid contribution -0.571 0.819 0.312 1.046 sum -2.461 4.371 -11.343 12.403 Atomic orbital electron populations 1.22652 0.83507 1.01756 0.98799 1.88160 1.17271 1.27574 1.95002 1.23012 0.96460 0.84392 0.98446 1.21556 0.89325 0.99325 0.91419 1.43319 1.55335 1.06368 1.08994 1.19338 1.45931 0.80467 0.99968 0.89303 1.25221 0.94174 0.99983 0.95889 1.69821 1.30365 1.36892 1.12829 0.86043 0.78209 0.82560 0.78770 1.19223 1.21122 1.20509 1.20078 0.80994 0.86650 0.86533 1.90516 1.59249 1.14583 1.85870 1.21060 1.04412 0.96920 0.92122 1.23514 1.05627 1.01495 0.92421 1.85510 1.86225 1.09649 1.05282 1.21945 1.03433 0.97098 0.97627 1.21234 1.00292 0.90767 1.00642 1.21065 1.01775 1.00396 0.91957 1.17675 1.03971 0.83683 0.88651 1.91487 1.93259 1.55304 1.72082 1.21031 1.02935 0.90731 1.00962 1.20628 0.99190 0.99087 0.91185 0.90426 0.95190 0.95003 0.94254 0.94450 0.86377 0.90933 0.92021 0.89352 0.88418 0.88767 0.89114 0.84227 0.84472 0.84436 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -7.53 10.18 -35.23 -0.36 -7.89 16 3 C 0.05 1.10 6.28 37.15 0.23 1.34 16 4 C 0.11 2.50 5.47 -4.04 -0.02 2.48 16 5 N -0.42 -10.24 2.52 -114.81 -0.29 -10.53 16 6 C -0.33 -8.12 8.23 -14.94 -0.12 -8.24 16 7 H 0.09 2.11 6.96 -52.48 -0.37 1.75 16 8 C 0.05 1.32 4.95 -17.47 -0.09 1.24 16 9 N -0.86 -22.35 11.34 55.50 0.63 -21.72 16 10 Si 0.92 19.71 29.61 -169.99 -5.03 14.68 16 11 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 14 C 0.47 10.76 7.62 -10.99 -0.08 10.68 16 15 O -0.61 -15.04 15.54 5.55 0.09 -14.96 16 16 C -0.10 -1.93 4.33 -27.88 -0.12 -2.06 16 17 C -0.08 -1.31 3.62 37.16 0.13 -1.17 16 18 S -0.11 -1.58 21.92 -107.50 -2.36 -3.94 16 19 C -0.09 -1.12 6.11 -39.06 -0.24 -1.36 16 20 C -0.11 -1.31 9.36 -39.37 -0.37 -1.68 16 21 C -0.13 -1.50 10.02 -39.54 -0.40 -1.89 16 22 C 0.08 0.94 7.30 -39.40 -0.29 0.65 16 23 F -0.14 -1.66 17.26 2.25 0.04 -1.62 16 24 C -0.14 -1.39 10.02 -39.55 -0.40 -1.79 16 25 C -0.08 -0.84 9.79 -39.37 -0.39 -1.23 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.12 2.97 5.37 -51.93 -0.28 2.69 16 32 H 0.07 1.69 7.36 -51.93 -0.38 1.30 16 33 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 34 H 0.09 1.58 7.68 -51.93 -0.40 1.19 16 35 H 0.10 1.84 8.10 -51.93 -0.42 1.42 16 36 H 0.09 1.54 7.67 -51.92 -0.40 1.15 16 37 H 0.09 1.45 7.74 -51.92 -0.40 1.04 16 38 H 0.14 1.76 5.88 -52.49 -0.31 1.45 16 39 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 41 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -28.35 363.76 -8.30 -36.65 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.47 Total: 5.32 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.03 Total: -1.47 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.34 Total: -32.25 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.27 Total: -22.85 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.36 Total: -3.94 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.35 -8.30 -36.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457178382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.412 kcal (2) G-P(sol) polarization free energy of solvation -28.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds