Wall clock time and date at job start Tue Mar 31 2020 15:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00121 * 2 1 4 4 C 1.52992 * 109.47396 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47374 * 64.99636 * 4 3 2 6 6 C 1.37094 * 120.00166 * 270.00393 * 5 4 3 7 7 H 1.08003 * 120.00148 * 145.15813 * 6 5 4 8 8 C 1.38944 * 120.00115 * 325.15875 * 6 5 4 9 9 N 1.31412 * 119.99951 * 337.41232 * 8 6 5 10 10 Si 1.86804 * 120.00073 * 157.40787 * 8 6 5 11 11 H 1.48499 * 109.47270 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47077 * 120.00244 * 10 8 6 13 13 H 1.48498 * 109.47073 * 239.99937 * 10 8 6 14 14 C 1.34780 * 119.99681 * 89.99949 * 5 4 3 15 15 O 1.21290 * 120.00164 * 4.90436 * 14 5 4 16 16 C 1.50697 * 119.99718 * 184.90047 * 14 5 4 17 17 C 1.53006 * 109.47188 * 177.67361 * 16 14 5 18 18 S 1.81398 * 109.47406 * 180.02562 * 17 16 14 19 19 C 1.76194 * 103.00081 * 179.97438 * 18 17 16 20 20 C 1.38949 * 120.05535 * 0.27606 * 19 18 17 21 21 C 1.38095 * 119.94564 * 180.21373 * 20 19 18 22 22 C 1.38485 * 120.05189 * 359.50953 * 21 20 19 23 23 F 1.35103 * 119.94048 * 180.28090 * 22 21 20 24 24 C 1.38474 * 120.11288 * 0.25808 * 22 21 20 25 25 C 1.38099 * 120.05404 * 359.97438 * 24 22 21 26 26 H 1.09002 * 109.47061 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47013 * 300.00098 * 1 2 3 28 28 H 1.09002 * 109.47187 * 60.00050 * 1 2 3 29 29 H 1.09001 * 109.47178 * 59.99854 * 3 2 1 30 30 H 1.09004 * 109.46890 * 300.00077 * 3 2 1 31 31 H 1.08999 * 109.46983 * 305.00184 * 4 3 2 32 32 H 1.08998 * 109.47512 * 184.99467 * 4 3 2 33 33 H 0.97004 * 119.99504 * 184.98482 * 9 8 6 34 34 H 1.09004 * 109.46982 * 57.67894 * 16 14 5 35 35 H 1.09000 * 109.47579 * 297.67573 * 16 14 5 36 36 H 1.09003 * 109.47154 * 59.99733 * 17 16 14 37 37 H 1.09000 * 109.47034 * 300.00546 * 17 16 14 38 38 H 1.07997 * 120.02304 * 359.97277 * 20 19 18 39 39 H 1.07996 * 119.97554 * 179.79492 * 21 20 19 40 40 H 1.08005 * 119.97530 * 179.97438 * 24 22 21 41 41 H 1.08006 * 120.02756 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0969 -0.7986 -1.3370 7 1 3.8637 -1.3054 -2.2617 8 6 4.5199 -1.5280 -0.2326 9 7 5.2124 -0.9403 0.7170 10 14 4.1039 -3.3442 -0.0977 11 1 3.3222 -3.7628 -1.2889 12 1 5.3586 -4.1354 -0.0266 13 1 3.3010 -3.5783 1.1293 14 6 4.2615 1.3337 -2.3219 15 8 4.2405 2.5423 -2.2223 16 6 4.6073 0.6922 -3.6409 17 6 4.8297 1.7795 -4.6941 18 16 5.2452 1.0074 -6.2821 19 6 5.4609 2.3911 -7.3513 20 6 5.3030 3.6813 -6.8602 21 6 5.4682 4.7640 -7.7013 22 6 5.8010 4.5651 -9.0307 23 9 5.9677 5.6262 -9.8502 24 6 5.9637 3.2804 -9.5214 25 6 5.7948 2.1942 -8.6855 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8514 0.5682 0.8409 32 1 3.9785 2.1765 0.0888 33 1 5.5695 -1.4636 1.4516 34 1 3.7893 0.0439 -3.9551 35 1 5.5169 0.1018 -3.5305 36 1 5.6477 2.4279 -4.3799 37 1 3.9201 2.3699 -4.8045 38 1 5.0474 3.8370 -5.8226 39 1 5.3423 5.7669 -7.3209 40 1 6.2228 3.1278 -10.5588 41 1 5.9222 1.1924 -9.0686 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457178382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:30 Heat of formation + Delta-G solvation = -111.937096 kcal Electronic energy + Delta-G solvation = -24731.737287 eV Core-core repulsion = 20845.199500 eV Total energy + Delta-G solvation = -3886.537787 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.91249 -40.59101 -39.79598 -38.58616 -36.63401 -33.97290 -33.49943 -32.21029 -31.58391 -30.84876 -27.30137 -26.79459 -25.74281 -23.99282 -23.80322 -22.96342 -20.92620 -19.05370 -18.64055 -18.35687 -17.96141 -17.30556 -17.19302 -16.96264 -16.63028 -16.50469 -16.25303 -16.05959 -15.68266 -15.54891 -15.28471 -14.66109 -14.60752 -14.36172 -14.31696 -13.71527 -13.61883 -13.33333 -13.25698 -12.94353 -12.84724 -12.81006 -12.48142 -12.43415 -12.28290 -12.14289 -12.02239 -11.77731 -11.25327 -11.04100 -10.58554 -10.52708 -10.34974 -10.20471 -9.43336 -8.40690 -8.24614 -5.93323 -0.05619 0.16120 0.40679 1.34751 1.43089 1.52605 1.62843 1.99738 2.36960 2.44407 2.95030 3.02822 3.22507 3.23637 3.67959 3.84613 3.85279 3.92860 4.16915 4.21766 4.25926 4.29665 4.44789 4.53270 4.56659 4.61571 4.64985 4.66619 4.79810 4.82798 4.85630 4.91616 4.97107 5.06543 5.09647 5.15391 5.38156 5.58508 5.76997 6.01822 6.42806 6.45048 7.19113 7.60729 8.01781 8.79124 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018028 B = 0.002670 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.792705 B =10483.556590 C =11218.377062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.394 6.394 3 C 0.066 3.934 4 C 0.104 3.896 5 N -0.436 5.436 6 C -0.337 4.337 7 H 0.096 0.904 8 C 0.014 3.986 9 N -0.894 5.894 10 Si 0.976 3.024 11 H -0.259 1.259 12 H -0.281 1.281 13 H -0.284 1.284 14 C 0.459 3.541 15 O -0.636 6.636 16 C -0.093 4.093 17 C -0.075 4.075 18 S -0.103 6.103 19 C -0.104 4.104 20 C -0.117 4.117 21 C -0.135 4.135 22 C 0.076 3.924 23 F -0.144 7.144 24 C -0.128 4.128 25 C -0.075 4.075 26 H 0.092 0.908 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.032 0.968 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.270 0.730 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.167 0.833 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.750 3.679 -13.577 14.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.313 6.313 3 C -0.011 4.011 4 C -0.020 4.020 5 N -0.153 5.153 6 C -0.464 4.464 7 H 0.113 0.887 8 C -0.189 4.189 9 N -0.532 5.532 10 Si 0.801 3.199 11 H -0.183 1.183 12 H -0.207 1.207 13 H -0.210 1.210 14 C 0.248 3.752 15 O -0.525 6.525 16 C -0.134 4.134 17 C -0.224 4.224 18 S 0.143 5.857 19 C -0.217 4.217 20 C -0.141 4.141 21 C -0.156 4.156 22 C 0.054 3.946 23 F -0.123 7.123 24 C -0.148 4.148 25 C -0.098 4.098 26 H 0.111 0.889 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.150 0.850 39 H 0.168 0.832 40 H 0.184 0.816 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.549 2.817 -13.448 13.974 hybrid contribution -0.370 1.144 0.802 1.445 sum -2.919 3.961 -12.646 13.570 Atomic orbital electron populations 1.22889 0.80795 1.03289 1.00243 1.88088 1.20278 1.27657 1.95279 1.22793 0.94304 0.84693 0.99360 1.21495 0.91677 0.98043 0.90749 1.43549 1.55685 1.06584 1.09507 1.19578 1.45725 0.80772 1.00372 0.88681 1.25937 0.93870 1.03528 0.95537 1.69921 1.31468 1.38289 1.13480 0.85140 0.77914 0.78253 0.78589 1.18259 1.20744 1.21022 1.20788 0.80218 0.86550 0.87688 1.90487 1.59990 1.15573 1.86473 1.20941 1.04387 0.97422 0.90683 1.23272 1.05214 1.00526 0.93375 1.85345 1.86657 1.09877 1.03813 1.22033 1.04893 0.96553 0.98262 1.21224 1.01082 0.91200 1.00576 1.21215 1.01452 1.00794 0.92108 1.17854 1.03945 0.84187 0.88617 1.91487 1.93266 1.55489 1.72044 1.21326 1.01460 0.89817 1.02194 1.20877 0.98258 1.00372 0.90320 0.88923 0.93154 0.94067 0.91709 0.94948 0.88370 0.92134 0.91994 0.88482 0.88632 0.89705 0.89408 0.85029 0.83156 0.81572 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 11.01 113.37 1.25 1.95 16 2 O -0.39 -16.09 10.18 -148.98 -1.52 -17.61 16 3 C 0.07 2.66 6.28 71.98 0.45 3.11 16 4 C 0.10 4.96 5.47 86.38 0.47 5.44 16 5 N -0.44 -21.47 2.52 -635.55 -1.60 -23.07 16 6 C -0.34 -16.66 8.23 84.04 0.69 -15.96 16 7 H 0.10 4.48 6.96 -2.91 -0.02 4.46 16 8 C 0.01 0.70 4.95 84.92 0.42 1.12 16 9 N -0.89 -47.09 11.34 21.66 0.25 -46.84 16 10 Si 0.98 40.12 29.61 68.60 2.03 42.15 16 11 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 12 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 13 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 14 C 0.46 21.40 7.62 87.66 0.67 22.06 16 15 O -0.64 -31.91 15.54 -3.06 -0.05 -31.95 16 16 C -0.09 -3.49 4.33 29.85 0.13 -3.36 16 17 C -0.08 -2.41 3.62 71.98 0.26 -2.15 16 18 S -0.10 -2.77 21.92 -56.49 -1.24 -4.00 16 19 C -0.10 -2.53 6.11 22.61 0.14 -2.40 16 20 C -0.12 -2.85 9.36 22.41 0.21 -2.64 16 21 C -0.14 -2.93 10.02 22.29 0.22 -2.71 16 22 C 0.08 1.58 7.30 22.38 0.16 1.74 16 23 F -0.14 -3.08 17.26 44.97 0.78 -2.30 16 24 C -0.13 -2.26 10.02 22.29 0.22 -2.03 16 25 C -0.07 -1.46 9.79 22.40 0.22 -1.24 16 26 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.10 5.09 5.37 -2.39 -0.01 5.08 16 32 H 0.06 2.93 7.36 -2.39 -0.02 2.91 16 33 H 0.27 13.49 8.32 -92.71 -0.77 12.72 16 34 H 0.10 3.44 7.68 -2.39 -0.02 3.42 16 35 H 0.10 3.61 8.10 -2.39 -0.02 3.59 16 36 H 0.08 2.85 7.67 -2.39 -0.02 2.83 16 37 H 0.09 2.83 7.74 -2.39 -0.02 2.81 16 38 H 0.13 3.37 5.88 -2.91 -0.02 3.35 16 39 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 41 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -60.69 363.76 5.21 -55.47 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 1.04 Total: 25.23 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 5.52 Total: 2.94 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -1.36 Total: -69.92 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -1.56 Total: -49.56 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -1.24 Total: -4.00 kcal Total: -60.69 5.21 -55.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457178382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.463 kcal (2) G-P(sol) polarization free energy of solvation -60.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds