Wall clock time and date at job start Tue Mar 31 2020 15:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81394 * 109.47241 * 2 1 4 4 C 1.76201 * 102.99980 * 180.02562 * 3 2 1 5 5 C 1.39091 * 120.00910 * 0.02562 * 4 3 2 6 6 C 1.38186 * 120.22208 * 180.02562 * 5 4 3 7 7 C 1.38043 * 120.23204 * 359.67955 * 6 5 4 8 8 C 1.39613 * 120.01341 * 0.59889 * 7 6 5 9 9 C 1.47808 * 120.10825 * 179.69707 * 8 7 6 10 10 O 1.21564 * 120.00184 * 179.72714 * 9 8 7 11 11 N 1.34771 * 120.00203 * 359.72730 * 9 8 7 12 12 C 1.39013 * 120.00401 * 185.76084 * 11 9 8 13 13 C 1.38682 * 120.28381 * 24.81518 * 12 11 9 14 14 C 1.38208 * 120.02760 * 180.32136 * 13 12 11 15 15 C 1.38872 * 120.62331 * 359.67455 * 14 13 12 16 16 C 1.36460 * 120.58272 * 0.02562 * 15 14 13 17 17 C 1.40735 * 119.94460 * 0.02562 * 16 15 14 18 18 C 1.41051 * 120.30426 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00217 * 185.65242 * 18 17 16 20 20 C 1.39968 * 119.99897 * 5.66199 * 18 17 16 21 21 N 1.30844 * 119.99973 * 34.85363 * 20 18 17 22 22 Si 1.86801 * 119.99899 * 214.85649 * 20 18 17 23 23 H 1.48502 * 109.46920 * 264.99759 * 22 20 18 24 24 H 1.48500 * 109.46989 * 24.99589 * 22 20 18 25 25 H 1.48498 * 109.46923 * 144.99715 * 22 20 18 26 26 C 1.38700 * 120.01008 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.46664 * 300.00402 * 1 2 3 28 28 H 1.09001 * 109.47005 * 59.99973 * 1 2 3 29 29 H 1.09003 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47179 * 239.99708 * 2 1 3 31 31 H 1.09001 * 109.47005 * 120.00026 * 2 1 3 32 32 H 1.08005 * 119.89055 * 359.97438 * 5 4 3 33 33 H 1.07994 * 119.88430 * 180.02562 * 6 5 4 34 34 H 1.08001 * 119.99217 * 180.30143 * 7 6 5 35 35 H 0.96997 * 119.99964 * 5.76589 * 11 9 8 36 36 H 1.08001 * 119.99181 * 0.02562 * 13 12 11 37 37 H 1.08005 * 119.68880 * 179.69688 * 14 13 12 38 38 H 1.07992 * 119.71100 * 180.02562 * 15 14 13 39 39 H 1.07998 * 120.03045 * 180.02562 * 16 15 14 40 40 H 0.97000 * 119.99900 * 180.02562 * 21 20 18 41 41 H 1.07998 * 120.11479 * 0.04074 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.8855 1.5116 -0.0008 5 6 4.4409 0.2364 -0.0017 6 6 5.8134 0.0755 -0.0018 7 6 6.6426 1.1791 -0.0076 8 6 6.0956 2.4636 -0.0008 9 6 6.9815 3.6468 -0.0002 10 8 6.5031 4.7643 0.0008 11 7 8.3196 3.4867 -0.0007 12 6 9.1522 4.5933 0.1207 13 6 8.6948 5.7483 0.7371 14 6 9.5248 6.8477 0.8490 15 6 10.8220 6.8080 0.3547 16 6 11.3000 5.6824 -0.2510 17 6 10.4752 4.5493 -0.3789 18 6 10.9617 3.3817 -1.0031 19 1 10.2986 2.5480 -1.1807 20 6 12.3040 3.3035 -1.3921 21 7 13.2294 3.8801 -0.6688 22 14 12.7741 2.3760 -2.9439 23 1 13.1636 0.9870 -2.5915 24 1 11.6154 2.3448 -3.8721 25 1 13.9170 3.0589 -3.6016 26 6 4.7102 2.6268 -0.0004 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7974 -0.6310 -0.0016 33 1 6.2388 -0.9171 -0.0030 34 1 7.7147 1.0489 -0.0125 35 1 8.7019 2.5993 -0.0858 36 1 7.6880 5.7905 1.1256 37 1 9.1614 7.7461 1.3257 38 1 11.4581 7.6754 0.4504 39 1 12.3104 5.6612 -0.6318 40 1 14.1595 3.8262 -0.9386 41 1 4.2812 3.6179 0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514688133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:36 Heat of formation + Delta-G solvation = 8.771835 kcal Electronic energy + Delta-G solvation = -23836.325953 eV Core-core repulsion = 20385.791722 eV Total energy + Delta-G solvation = -3450.534230 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.07166 -38.49320 -36.99368 -33.96843 -33.82734 -33.35219 -31.42465 -31.04411 -29.71934 -28.27394 -25.43763 -24.49892 -23.68796 -22.53401 -21.57505 -20.75055 -19.54822 -18.14223 -17.40292 -16.69134 -16.29574 -15.96254 -15.41764 -15.25983 -15.14338 -14.67596 -14.58510 -14.23742 -13.93704 -13.70700 -13.11605 -12.88663 -12.80325 -12.74384 -12.44372 -12.31214 -11.91048 -11.83633 -11.67496 -11.41962 -11.29821 -11.22884 -11.04201 -10.57633 -10.36910 -10.13283 -9.90682 -9.83692 -9.40009 -9.07937 -9.05271 -8.79036 -7.59974 -7.58018 -7.14847 -6.80005 -4.36507 0.79248 1.17204 1.25419 2.18208 2.62290 2.81914 2.96945 3.00689 3.23964 3.29638 3.76679 3.82565 4.02459 4.42210 4.47383 4.50333 4.69693 4.75157 4.95295 5.09102 5.13510 5.27923 5.34573 5.36666 5.53627 5.64285 5.66365 5.78437 6.06449 6.22498 6.28413 6.37961 6.52168 6.63151 6.66930 6.83020 7.01249 7.17358 7.29672 7.53431 7.74232 7.96185 8.05784 8.15507 8.35600 8.50885 8.73421 8.79155 9.01567 9.85551 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.002881 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.601665 B = 9717.905838 C =11115.896043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 S -0.115 6.115 4 C -0.094 4.094 5 C -0.118 4.118 6 C -0.106 4.106 7 C -0.093 4.093 8 C -0.099 4.099 9 C 0.533 3.467 10 O -0.534 6.534 11 N -0.623 5.623 12 C -0.005 4.005 13 C -0.082 4.082 14 C -0.243 4.243 15 C -0.103 4.103 16 C -0.184 4.184 17 C 0.101 3.899 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.088 3.912 21 N -0.757 5.757 22 Si 0.898 3.102 23 H -0.268 1.268 24 H -0.257 1.257 25 H -0.272 1.272 26 C -0.044 4.044 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.401 0.599 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.128 0.872 40 H 0.285 0.715 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.845 -11.670 0.205 18.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.262 4.262 3 S 0.127 5.873 4 C -0.207 4.207 5 C -0.142 4.142 6 C -0.126 4.126 7 C -0.114 4.114 8 C -0.104 4.104 9 C 0.321 3.679 10 O -0.414 6.414 11 N -0.264 5.264 12 C -0.098 4.098 13 C -0.102 4.102 14 C -0.263 4.263 15 C -0.122 4.122 16 C -0.204 4.204 17 C 0.097 3.903 18 C -0.490 4.490 19 H 0.095 0.905 20 C -0.135 4.135 21 N -0.379 5.379 22 Si 0.721 3.279 23 H -0.194 1.194 24 H -0.180 1.180 25 H -0.197 1.197 26 C -0.068 4.068 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.238 0.762 36 H 0.133 0.867 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.145 0.855 40 H 0.096 0.904 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.707 -9.911 0.270 18.574 hybrid contribution 1.450 -2.018 -0.742 2.593 sum -14.257 -11.929 -0.473 18.595 Atomic orbital electron populations 1.21514 0.91767 1.02902 1.03415 1.23613 1.00533 0.96464 1.05571 1.85640 0.97541 1.11244 1.92836 1.21600 0.96890 0.96137 1.06040 1.21257 0.95936 0.95344 1.01701 1.20974 0.92757 0.98930 0.99898 1.21466 1.00461 0.91620 0.97871 1.20056 0.93700 0.93648 1.03022 1.18131 0.82468 0.88396 0.78915 1.90704 1.75320 1.24989 1.50352 1.42793 1.04603 1.10236 1.68817 1.17516 0.92365 0.88998 1.10958 1.20738 0.99021 0.92609 0.97820 1.20237 0.95430 0.98319 1.12302 1.20446 0.94929 0.97147 0.99640 1.21081 1.01159 0.92526 1.05601 1.17320 0.89526 0.93681 0.89730 1.19262 0.94269 1.01043 1.34472 0.90520 1.25952 0.96136 0.94372 0.97022 1.69926 1.02241 1.32723 1.33059 0.86461 0.79338 0.79770 0.82307 1.19354 1.18043 1.19695 1.20852 0.91508 0.98234 0.96192 0.91480 0.91472 0.90771 0.89401 0.89403 0.85768 0.85074 0.84961 0.76199 0.86698 0.89349 0.89547 0.85470 0.90387 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.92 37.16 0.37 -0.41 16 2 C -0.11 -0.81 5.05 37.16 0.19 -0.63 16 3 S -0.11 -1.26 21.92 -107.50 -2.36 -3.61 16 4 C -0.09 -1.20 6.11 -39.09 -0.24 -1.44 16 5 C -0.12 -1.28 9.36 -39.28 -0.37 -1.65 16 6 C -0.11 -1.16 10.02 -39.67 -0.40 -1.56 16 7 C -0.09 -1.24 9.54 -39.14 -0.37 -1.61 16 8 C -0.10 -1.61 5.87 -105.00 -0.62 -2.23 16 9 C 0.53 10.82 7.57 -12.35 -0.09 10.73 16 10 O -0.53 -12.46 13.51 5.31 0.07 -12.38 16 11 N -0.62 -13.11 5.06 -10.34 -0.05 -13.16 16 12 C 0.00 -0.12 6.46 -83.20 -0.54 -0.66 16 13 C -0.08 -2.04 8.70 -39.43 -0.34 -2.38 16 14 C -0.24 -5.85 10.04 -39.36 -0.39 -6.25 16 15 C -0.10 -2.49 9.97 -39.99 -0.40 -2.89 16 16 C -0.18 -4.76 8.88 -39.28 -0.35 -5.10 16 17 C 0.10 2.62 5.72 -106.65 -0.61 2.01 16 18 C -0.46 -11.36 8.63 -37.87 -0.33 -11.69 16 19 H 0.08 1.74 6.65 -52.49 -0.35 1.39 16 20 C 0.09 2.05 4.96 -17.32 -0.09 1.96 16 21 N -0.76 -18.11 10.94 55.55 0.61 -17.50 16 22 Si 0.90 17.26 29.67 -169.99 -5.04 12.22 16 23 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 24 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 25 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 26 C -0.04 -0.67 9.34 -38.94 -0.36 -1.03 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.57 7.74 -51.92 -0.40 0.17 16 31 H 0.09 0.57 7.75 -51.92 -0.40 0.16 16 32 H 0.12 1.01 5.86 -52.48 -0.31 0.70 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.13 1.60 6.41 -52.49 -0.34 1.26 16 35 H 0.40 7.45 5.24 -40.82 -0.21 7.24 16 36 H 0.12 2.85 5.79 -52.49 -0.30 2.54 16 37 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.13 3.32 5.56 -52.49 -0.29 3.03 16 40 H 0.28 6.11 8.30 -40.82 -0.34 5.77 16 41 H 0.14 2.26 7.65 -52.49 -0.40 1.86 16 LS Contribution 354.09 15.07 5.34 5.34 Total: -1.00 -29.34 354.09 -11.06 -40.40 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -4.68 Total: 13.53 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -4.94 Total: -24.82 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 0.56 Total: -30.66 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.07 Total: -12.38 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.04 Total: 12.22 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -2.36 Total: -3.61 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.34 -11.06 -40.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514688133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.169 kcal (2) G-P(sol) polarization free energy of solvation -29.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds