Wall clock time and date at job start Tue Mar 31 2020 15:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81394 * 109.47241 * 2 1 4 4 C 1.76201 * 102.99980 * 180.02562 * 3 2 1 5 5 C 1.39091 * 120.00910 * 0.02562 * 4 3 2 6 6 C 1.38186 * 120.22208 * 180.02562 * 5 4 3 7 7 C 1.38043 * 120.23204 * 359.67955 * 6 5 4 8 8 C 1.39613 * 120.01341 * 0.59889 * 7 6 5 9 9 C 1.47808 * 120.10825 * 179.69707 * 8 7 6 10 10 O 1.21564 * 120.00184 * 179.72714 * 9 8 7 11 11 N 1.34771 * 120.00203 * 359.72730 * 9 8 7 12 12 C 1.39013 * 120.00401 * 185.76084 * 11 9 8 13 13 C 1.38682 * 120.28381 * 24.81518 * 12 11 9 14 14 C 1.38208 * 120.02760 * 180.32136 * 13 12 11 15 15 C 1.38872 * 120.62331 * 359.67455 * 14 13 12 16 16 C 1.36460 * 120.58272 * 0.02562 * 15 14 13 17 17 C 1.40735 * 119.94460 * 0.02562 * 16 15 14 18 18 C 1.41051 * 120.30426 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00217 * 185.65242 * 18 17 16 20 20 C 1.39968 * 119.99897 * 5.66199 * 18 17 16 21 21 N 1.30844 * 119.99973 * 34.85363 * 20 18 17 22 22 Si 1.86801 * 119.99899 * 214.85649 * 20 18 17 23 23 H 1.48502 * 109.46920 * 264.99759 * 22 20 18 24 24 H 1.48500 * 109.46989 * 24.99589 * 22 20 18 25 25 H 1.48498 * 109.46923 * 144.99715 * 22 20 18 26 26 C 1.38700 * 120.01008 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.46664 * 300.00402 * 1 2 3 28 28 H 1.09001 * 109.47005 * 59.99973 * 1 2 3 29 29 H 1.09003 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47179 * 239.99708 * 2 1 3 31 31 H 1.09001 * 109.47005 * 120.00026 * 2 1 3 32 32 H 1.08005 * 119.89055 * 359.97438 * 5 4 3 33 33 H 1.07994 * 119.88430 * 180.02562 * 6 5 4 34 34 H 1.08001 * 119.99217 * 180.30143 * 7 6 5 35 35 H 0.96997 * 119.99964 * 5.76589 * 11 9 8 36 36 H 1.08001 * 119.99181 * 0.02562 * 13 12 11 37 37 H 1.08005 * 119.68880 * 179.69688 * 14 13 12 38 38 H 1.07992 * 119.71100 * 180.02562 * 15 14 13 39 39 H 1.07998 * 120.03045 * 180.02562 * 16 15 14 40 40 H 0.97000 * 119.99900 * 180.02562 * 21 20 18 41 41 H 1.07998 * 120.11479 * 0.04074 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.8855 1.5116 -0.0008 5 6 4.4409 0.2364 -0.0017 6 6 5.8134 0.0755 -0.0018 7 6 6.6426 1.1791 -0.0076 8 6 6.0956 2.4636 -0.0008 9 6 6.9815 3.6468 -0.0002 10 8 6.5031 4.7643 0.0008 11 7 8.3196 3.4867 -0.0007 12 6 9.1522 4.5933 0.1207 13 6 8.6948 5.7483 0.7371 14 6 9.5248 6.8477 0.8490 15 6 10.8220 6.8080 0.3547 16 6 11.3000 5.6824 -0.2510 17 6 10.4752 4.5493 -0.3789 18 6 10.9617 3.3817 -1.0031 19 1 10.2986 2.5480 -1.1807 20 6 12.3040 3.3035 -1.3921 21 7 13.2294 3.8801 -0.6688 22 14 12.7741 2.3760 -2.9439 23 1 13.1636 0.9870 -2.5915 24 1 11.6154 2.3448 -3.8721 25 1 13.9170 3.0589 -3.6016 26 6 4.7102 2.6268 -0.0004 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7974 -0.6310 -0.0016 33 1 6.2388 -0.9171 -0.0030 34 1 7.7147 1.0489 -0.0125 35 1 8.7019 2.5993 -0.0858 36 1 7.6880 5.7905 1.1256 37 1 9.1614 7.7461 1.3257 38 1 11.4581 7.6754 0.4504 39 1 12.3104 5.6612 -0.6318 40 1 14.1595 3.8262 -0.9386 41 1 4.2812 3.6179 0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514688133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:35 Heat of formation + Delta-G solvation = -5.142119 kcal Electronic energy + Delta-G solvation = -23836.929307 eV Core-core repulsion = 20385.791722 eV Total energy + Delta-G solvation = -3451.137585 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.57069 -39.82889 -38.69620 -35.74000 -35.60615 -33.89049 -32.57724 -32.06383 -31.58891 -30.03350 -27.23913 -25.55034 -24.64599 -23.62366 -23.17616 -22.35601 -21.16194 -19.57298 -19.18859 -18.08083 -17.41973 -17.30308 -16.86642 -16.36237 -16.18047 -15.94454 -15.75404 -15.69654 -15.31110 -14.80091 -14.76778 -14.46317 -14.22124 -13.97828 -13.58846 -13.41213 -13.23662 -13.12484 -13.01556 -12.74365 -12.61631 -12.38062 -12.16369 -12.13047 -11.91600 -11.66588 -11.17586 -11.12123 -10.86973 -10.85774 -10.57204 -10.12421 -9.52471 -8.96429 -8.64551 -8.46397 -6.24645 -0.32169 0.15232 0.44980 0.90279 1.06128 1.38749 1.43575 1.49439 1.61190 1.87804 2.15433 2.30014 2.60613 2.73860 3.61374 3.73231 3.79858 3.96006 4.00438 4.03085 4.08662 4.33772 4.47010 4.51778 4.54641 4.60344 4.78013 4.79960 4.86852 4.90193 4.99259 5.07235 5.19653 5.20843 5.24162 5.26863 5.30723 5.44066 5.67380 5.70614 5.85933 6.11700 6.18922 6.23650 6.61077 6.62238 6.88602 6.98116 7.30906 8.12008 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.002881 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.601665 B = 9717.905838 C =11115.896043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.102 4.102 3 S -0.153 6.153 4 C -0.096 4.096 5 C -0.104 4.104 6 C -0.094 4.094 7 C -0.096 4.096 8 C -0.123 4.123 9 C 0.532 3.468 10 O -0.574 6.574 11 N -0.622 5.622 12 C -0.017 4.017 13 C -0.098 4.098 14 C -0.256 4.256 15 C -0.106 4.106 16 C -0.212 4.212 17 C 0.075 3.925 18 C -0.483 4.483 19 H 0.089 0.911 20 C 0.051 3.949 21 N -0.782 5.782 22 Si 0.975 3.025 23 H -0.252 1.252 24 H -0.262 1.262 25 H -0.267 1.267 26 C -0.063 4.063 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.162 0.838 33 H 0.173 0.827 34 H 0.142 0.858 35 H 0.411 0.589 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.296 0.704 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.467 -15.565 -0.652 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.250 4.250 3 S 0.090 5.910 4 C -0.209 4.209 5 C -0.128 4.128 6 C -0.113 4.113 7 C -0.117 4.117 8 C -0.128 4.128 9 C 0.322 3.678 10 O -0.456 6.456 11 N -0.264 5.264 12 C -0.111 4.111 13 C -0.118 4.118 14 C -0.276 4.276 15 C -0.125 4.125 16 C -0.231 4.231 17 C 0.071 3.929 18 C -0.510 4.510 19 H 0.107 0.893 20 C -0.171 4.171 21 N -0.405 5.405 22 Si 0.794 3.206 23 H -0.176 1.176 24 H -0.186 1.186 25 H -0.192 1.192 26 C -0.087 4.087 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.180 0.820 33 H 0.190 0.810 34 H 0.160 0.840 35 H 0.250 0.750 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.332 -13.823 -0.569 21.404 hybrid contribution 1.532 -0.900 -0.441 1.831 sum -14.800 -14.724 -1.010 20.901 Atomic orbital electron populations 1.21553 0.90682 1.04282 1.03040 1.23779 1.01228 0.93072 1.06931 1.85864 0.96684 1.15900 1.92595 1.21732 0.97583 0.96165 1.05402 1.21744 0.96539 0.95478 0.98993 1.21420 0.92512 0.99758 0.97591 1.21640 1.01426 0.91014 0.97588 1.19743 0.93288 0.93141 1.06594 1.18822 0.82391 0.89347 0.77192 1.90661 1.75900 1.27067 1.52010 1.42736 1.04722 1.09812 1.69112 1.17683 0.92792 0.90034 1.10578 1.20877 0.98973 0.93453 0.98537 1.20490 0.95491 0.98921 1.12649 1.20679 0.95254 0.97562 0.98962 1.21169 1.01224 0.93501 1.07252 1.17674 0.90152 0.94577 0.90476 1.19594 0.95409 1.01111 1.34849 0.89341 1.26833 0.95517 0.95169 0.99536 1.69928 1.03093 1.33003 1.34465 0.85308 0.78688 0.79026 0.77545 1.17589 1.18562 1.19164 1.20748 0.91624 0.98421 0.97941 0.91909 0.91921 0.88299 0.87953 0.87930 0.82030 0.80972 0.84048 0.75008 0.87330 0.87402 0.87203 0.86153 0.89245 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.92 71.98 0.71 -0.44 16 2 C -0.10 -1.11 5.05 71.98 0.36 -0.75 16 3 S -0.15 -3.19 21.92 -56.49 -1.24 -4.42 16 4 C -0.10 -2.35 6.11 22.59 0.14 -2.21 16 5 C -0.10 -1.87 9.36 22.46 0.21 -1.66 16 6 C -0.09 -1.69 10.02 22.21 0.22 -1.46 16 7 C -0.10 -2.40 9.54 22.56 0.22 -2.19 16 8 C -0.12 -4.09 5.87 -20.11 -0.12 -4.20 16 9 C 0.53 22.74 7.57 86.78 0.66 23.39 16 10 O -0.57 -28.64 13.51 -3.92 -0.05 -28.70 16 11 N -0.62 -27.15 5.06 -304.90 -1.54 -28.69 16 12 C -0.02 -0.86 6.46 38.91 0.25 -0.61 16 13 C -0.10 -5.13 8.70 22.37 0.19 -4.93 16 14 C -0.26 -12.71 10.04 22.41 0.22 -12.49 16 15 C -0.11 -5.25 9.97 22.01 0.22 -5.03 16 16 C -0.21 -11.29 8.88 22.46 0.20 -11.09 16 17 C 0.08 4.02 5.72 -21.18 -0.12 3.90 16 18 C -0.48 -23.93 8.63 23.38 0.20 -23.73 16 19 H 0.09 4.01 6.65 -2.91 -0.02 3.99 16 20 C 0.05 2.34 4.96 85.26 0.42 2.76 16 21 N -0.78 -37.43 10.94 21.83 0.24 -37.19 16 22 Si 0.97 34.51 29.67 68.60 2.04 36.54 16 23 H -0.25 -8.23 7.11 99.48 0.71 -7.52 16 24 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 25 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 26 C -0.06 -1.99 9.34 22.68 0.21 -1.78 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.10 0.87 7.74 -2.39 -0.02 0.85 16 31 H 0.10 0.87 7.75 -2.39 -0.02 0.85 16 32 H 0.16 1.71 5.86 -2.91 -0.02 1.69 16 33 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.14 3.21 6.41 -2.91 -0.02 3.19 16 35 H 0.41 15.61 5.24 -92.71 -0.49 15.13 16 36 H 0.11 5.72 5.79 -2.91 -0.02 5.71 16 37 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 39 H 0.12 6.47 5.56 -2.91 -0.02 6.45 16 40 H 0.30 12.55 8.30 -92.71 -0.77 11.78 16 41 H 0.12 4.15 7.65 -2.91 -0.02 4.13 16 Total: -1.00 -67.39 354.09 4.24 -63.16 By element: Atomic # 1 Polarization: 41.22 SS G_CDS: 0.59 Total: 41.81 kcal Atomic # 6 Polarization: -46.72 SS G_CDS: 4.21 Total: -42.51 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -1.30 Total: -65.88 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.05 Total: -28.70 kcal Atomic # 14 Polarization: 34.51 SS G_CDS: 2.04 Total: 36.54 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -1.24 Total: -4.42 kcal Total: -67.39 4.24 -63.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514688133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.015 kcal (2) G-P(sol) polarization free energy of solvation -67.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds