Wall clock time and date at job start Tue Mar 31 2020 14:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.39752 * 2 1 4 4 C 1.50807 * 109.43581 * 240.10410 * 2 1 3 5 5 C 1.39056 * 117.80366 * 49.04819 * 4 2 1 6 6 F 1.35100 * 119.77969 * 358.88269 * 5 4 2 7 7 C 1.38189 * 120.45138 * 178.85947 * 5 4 2 8 8 C 1.38237 * 119.68377 * 0.02686 * 7 5 4 9 9 C 1.37908 * 119.85413 * 0.24483 * 8 7 5 10 10 C 1.37630 * 122.35777 * 228.37441 * 4 2 1 11 11 C 1.50603 * 122.85672 * 1.45260 * 10 4 2 12 12 C 1.52783 * 110.86166 * 339.85390 * 11 10 4 13 13 N 1.46682 * 109.44155 * 119.89407 * 2 1 3 14 14 S 1.65602 * 121.33762 * 344.49324 * 13 2 1 15 15 O 1.42102 * 104.27834 * 41.98210 * 14 13 2 16 16 O 1.42101 * 104.27592 * 169.83578 * 14 13 2 17 17 C 1.81405 * 104.45007 * 285.90904 * 14 13 2 18 18 C 1.53000 * 109.46759 * 179.97438 * 17 14 13 19 19 C 1.50704 * 109.46779 * 179.97438 * 18 17 14 20 20 H 1.07994 * 119.99902 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99954 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00075 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99829 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47018 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46733 * 120.00445 * 23 21 19 26 26 H 1.48500 * 109.47051 * 240.00087 * 23 21 19 27 27 H 1.09006 * 109.46622 * 172.65502 * 1 2 3 28 28 H 1.08998 * 109.46640 * 292.64727 * 1 2 3 29 29 H 1.08996 * 109.47723 * 52.65424 * 1 2 3 30 30 H 1.07998 * 120.16059 * 180.02562 * 7 5 4 31 31 H 1.08001 * 120.06606 * 180.26418 * 8 7 5 32 32 H 1.08001 * 119.67997 * 179.97438 * 9 8 7 33 33 H 1.09006 * 109.20107 * 100.20807 * 11 10 4 34 34 H 1.08997 * 109.19931 * 219.49611 * 11 10 4 35 35 H 1.08996 * 109.77724 * 167.06633 * 12 11 10 36 36 H 1.09009 * 109.77292 * 287.86115 * 12 11 10 37 37 H 1.08991 * 109.46980 * 299.99985 * 17 14 13 38 38 H 1.08998 * 109.46947 * 60.00041 * 17 14 13 39 39 H 1.08991 * 109.47503 * 299.99837 * 18 17 14 40 40 H 1.08998 * 109.47217 * 60.00378 * 18 17 14 41 41 H 0.96996 * 120.00279 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8921 1.0281 0.0000 4 6 2.0319 -0.7088 -1.2329 5 6 1.4874 -0.3420 -2.4588 6 9 0.5254 0.6051 -2.5092 7 6 1.9241 -0.9394 -3.6259 8 6 2.9085 -1.9084 -3.5721 9 6 3.4443 -2.2760 -2.3557 10 6 3.0052 -1.6804 -1.1792 11 6 3.6290 -2.1415 0.1117 12 6 3.4316 -1.1015 1.2134 13 7 2.0183 -0.6894 1.1992 14 16 1.0197 -0.9924 2.4850 15 8 -0.1986 -1.4177 1.8900 16 8 1.7731 -1.8652 3.3157 17 6 0.8082 0.6223 3.2843 18 6 -0.1067 0.4728 4.5015 19 6 -0.2819 1.8141 5.1658 20 1 0.2098 2.6859 4.7602 21 6 -1.0707 1.9284 6.2909 22 7 -1.6697 0.8668 6.7846 23 14 -1.2884 3.5911 7.1140 24 1 -0.5159 4.6172 6.3687 25 1 -2.7272 3.9586 7.1142 26 1 -0.7956 3.5192 8.5130 27 1 -0.3633 -1.0193 -0.1314 28 1 -0.3632 0.3957 0.9484 29 1 -0.3634 0.6234 -0.8169 30 1 1.4983 -0.6506 -4.5754 31 1 3.2574 -2.3763 -4.4809 32 1 4.2130 -3.0337 -2.3170 33 1 3.1670 -3.0801 0.4179 34 1 4.6960 -2.3018 -0.0429 35 1 3.6787 -1.5379 2.1811 36 1 4.0694 -0.2380 1.0239 37 1 1.7796 0.9996 3.6035 38 1 0.3611 1.3216 2.5778 39 1 -1.0780 0.0957 4.1818 40 1 0.3401 -0.2266 5.2081 41 1 -2.2243 0.9471 7.5762 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523415911.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:21 Heat of formation + Delta-G solvation = -85.535110 kcal Electronic energy + Delta-G solvation = -26480.931037 eV Core-core repulsion = 22595.538126 eV Total energy + Delta-G solvation = -3885.392911 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.14357 -40.13233 -37.12065 -36.75411 -35.43283 -33.93702 -33.42961 -31.60002 -31.18845 -29.85954 -27.58309 -25.65051 -24.31115 -23.68618 -21.90418 -21.59825 -20.71215 -18.39122 -17.52384 -17.18549 -16.84879 -16.61612 -16.26948 -15.79433 -15.60772 -15.45005 -14.84334 -14.78390 -14.55778 -13.96523 -13.88767 -13.56546 -13.36130 -12.99164 -12.89339 -12.53164 -12.37422 -12.21613 -11.87474 -11.77355 -11.74074 -11.59139 -11.42252 -11.27188 -11.09119 -11.03462 -10.91022 -10.40648 -10.36777 -10.20252 -9.78397 -9.35821 -8.96817 -8.91007 -8.74571 -8.51531 -6.13352 -4.18928 0.70776 0.92514 0.96627 2.93615 3.24991 3.30728 3.32323 3.35843 4.00420 4.24528 4.26117 4.36630 4.39503 4.61171 4.65777 4.73099 4.85065 4.95682 5.10876 5.13317 5.21885 5.27085 5.30388 5.41274 5.53584 5.62783 5.67302 5.75005 5.78795 5.84185 5.89886 5.99879 6.00767 6.13954 6.32836 6.44921 6.58129 6.61431 6.68671 7.28669 7.34229 7.79968 8.16380 8.84742 9.46022 10.97714 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.022581 B = 0.003409 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.692235 B = 8211.873928 C = 8876.903446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.197 3.803 3 H 0.087 0.913 4 C -0.112 4.112 5 C 0.107 3.893 6 F -0.132 7.132 7 C -0.159 4.159 8 C -0.093 4.093 9 C -0.133 4.133 10 C -0.038 4.038 11 C -0.098 4.098 12 C 0.117 3.883 13 N -1.004 6.004 14 S 2.591 3.409 15 O -0.957 6.957 16 O -0.965 6.965 17 C -0.590 4.590 18 C 0.028 3.972 19 C -0.520 4.520 20 H 0.062 0.938 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.098 -4.156 -20.358 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.090 3.910 3 H 0.105 0.895 4 C -0.115 4.115 5 C 0.087 3.913 6 F -0.110 7.110 7 C -0.178 4.178 8 C -0.111 4.111 9 C -0.151 4.151 10 C -0.038 4.038 11 C -0.136 4.136 12 C -0.008 4.008 13 N -0.840 5.840 14 S 2.691 3.309 15 O -0.947 6.947 16 O -0.956 6.956 17 C -0.723 4.723 18 C -0.011 4.011 19 C -0.559 4.559 20 H 0.080 0.920 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.092 0.908 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.600 -5.064 -19.987 23.657 hybrid contribution -0.185 1.692 0.366 1.741 sum 11.415 -3.372 -19.621 22.949 Atomic orbital electron populations 1.22890 0.91619 1.06040 1.04443 1.19675 0.95182 0.94570 0.81524 0.89542 1.19853 0.98470 0.99384 0.93755 1.17573 0.89606 0.90256 0.93822 1.91434 1.60680 1.61999 1.96921 1.21060 1.00140 0.99322 0.97271 1.20894 0.95687 0.96409 0.98143 1.21239 1.01256 1.00819 0.91779 1.19401 0.94562 0.94295 0.95571 1.20870 1.00963 0.99929 0.91872 1.21422 0.81462 0.97582 1.00376 1.58144 1.21856 1.73895 1.30100 1.05755 0.73531 0.78558 0.73059 1.93615 1.45408 1.81065 1.74625 1.93504 1.71284 1.63162 1.67606 1.30531 1.10402 1.19259 1.12127 1.18968 0.93210 0.99886 0.88992 1.21038 1.30194 0.93431 1.11247 0.91965 1.25070 0.95372 0.97082 0.96969 1.69961 1.31239 1.28740 1.22888 0.86415 0.78033 0.83551 0.79308 1.19619 1.20773 1.20784 0.89004 0.90927 0.89559 0.84704 0.85087 0.85374 0.89520 0.89192 0.87514 0.90785 0.86135 0.86159 0.94802 0.94886 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.84 7.04 37.16 0.26 -2.58 16 2 C 0.20 2.61 3.38 -68.93 -0.23 2.37 16 3 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 4 C -0.11 -1.38 5.43 -104.49 -0.57 -1.94 16 5 C 0.11 1.24 6.95 -39.30 -0.27 0.97 16 6 F -0.13 -1.60 14.06 2.25 0.03 -1.57 16 7 C -0.16 -1.48 10.03 -39.60 -0.40 -1.88 16 8 C -0.09 -0.75 10.04 -39.70 -0.40 -1.15 16 9 C -0.13 -1.15 9.59 -39.42 -0.38 -1.53 16 10 C -0.04 -0.41 5.76 -104.61 -0.60 -1.01 16 11 C -0.10 -0.96 5.87 -28.04 -0.16 -1.12 16 12 C 0.12 1.32 6.44 -3.76 -0.02 1.30 16 13 N -1.00 -14.16 3.17 -107.92 -0.34 -14.50 16 14 S 2.59 47.14 4.88 -107.50 -0.52 46.62 16 15 O -0.96 -19.55 13.70 -57.54 -0.79 -20.34 16 16 O -0.96 -19.69 16.37 -57.54 -0.94 -20.63 16 17 C -0.59 -11.38 5.89 37.16 0.22 -11.16 16 18 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 19 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 20 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 23 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H 0.09 1.51 6.87 -51.93 -0.36 1.15 16 28 H 0.07 1.14 4.88 -51.93 -0.25 0.89 16 29 H 0.09 1.13 5.61 -51.93 -0.29 0.84 16 30 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 32 H 0.13 0.80 8.05 -52.49 -0.42 0.38 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.11 1.24 6.73 -51.93 -0.35 0.89 16 36 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 38 H 0.12 2.10 6.97 -51.93 -0.36 1.73 16 39 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 340.51 15.07 5.13 5.13 Total: -1.00 -34.00 340.51 -10.21 -44.21 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.38 Total: 0.92 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: -3.11 Total: -30.29 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.39 Total: -40.23 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -1.73 Total: -40.97 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.03 Total: -1.57 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 47.14 SS G_CDS: -0.52 Total: 46.62 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.00 -10.21 -44.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523415911.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.325 kcal (2) G-P(sol) polarization free energy of solvation -34.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds