Wall clock time and date at job start Tue Mar 31 2020 14:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.39752 * 2 1 4 4 C 1.50807 * 109.43581 * 240.10410 * 2 1 3 5 5 C 1.39056 * 117.80366 * 49.04819 * 4 2 1 6 6 F 1.35100 * 119.77969 * 358.88269 * 5 4 2 7 7 C 1.38189 * 120.45138 * 178.85947 * 5 4 2 8 8 C 1.38237 * 119.68377 * 0.02686 * 7 5 4 9 9 C 1.37908 * 119.85413 * 0.24483 * 8 7 5 10 10 C 1.37630 * 122.35777 * 228.37441 * 4 2 1 11 11 C 1.50603 * 122.85672 * 1.45260 * 10 4 2 12 12 C 1.52783 * 110.86166 * 339.85390 * 11 10 4 13 13 N 1.46682 * 109.44155 * 119.89407 * 2 1 3 14 14 S 1.65602 * 121.33762 * 344.49324 * 13 2 1 15 15 O 1.42102 * 104.27834 * 41.98210 * 14 13 2 16 16 O 1.42101 * 104.27592 * 169.83578 * 14 13 2 17 17 C 1.81405 * 104.45007 * 285.90904 * 14 13 2 18 18 C 1.53000 * 109.46759 * 179.97438 * 17 14 13 19 19 C 1.50704 * 109.46779 * 179.97438 * 18 17 14 20 20 H 1.07994 * 119.99902 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99954 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00075 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99829 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47018 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46733 * 120.00445 * 23 21 19 26 26 H 1.48500 * 109.47051 * 240.00087 * 23 21 19 27 27 H 1.09006 * 109.46622 * 172.65502 * 1 2 3 28 28 H 1.08998 * 109.46640 * 292.64727 * 1 2 3 29 29 H 1.08996 * 109.47723 * 52.65424 * 1 2 3 30 30 H 1.07998 * 120.16059 * 180.02562 * 7 5 4 31 31 H 1.08001 * 120.06606 * 180.26418 * 8 7 5 32 32 H 1.08001 * 119.67997 * 179.97438 * 9 8 7 33 33 H 1.09006 * 109.20107 * 100.20807 * 11 10 4 34 34 H 1.08997 * 109.19931 * 219.49611 * 11 10 4 35 35 H 1.08996 * 109.77724 * 167.06633 * 12 11 10 36 36 H 1.09009 * 109.77292 * 287.86115 * 12 11 10 37 37 H 1.08991 * 109.46980 * 299.99985 * 17 14 13 38 38 H 1.08998 * 109.46947 * 60.00041 * 17 14 13 39 39 H 1.08991 * 109.47503 * 299.99837 * 18 17 14 40 40 H 1.08998 * 109.47217 * 60.00378 * 18 17 14 41 41 H 0.96996 * 120.00279 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8921 1.0281 0.0000 4 6 2.0319 -0.7088 -1.2329 5 6 1.4874 -0.3420 -2.4588 6 9 0.5254 0.6051 -2.5092 7 6 1.9241 -0.9394 -3.6259 8 6 2.9085 -1.9084 -3.5721 9 6 3.4443 -2.2760 -2.3557 10 6 3.0052 -1.6804 -1.1792 11 6 3.6290 -2.1415 0.1117 12 6 3.4316 -1.1015 1.2134 13 7 2.0183 -0.6894 1.1992 14 16 1.0197 -0.9924 2.4850 15 8 -0.1986 -1.4177 1.8900 16 8 1.7731 -1.8652 3.3157 17 6 0.8082 0.6223 3.2843 18 6 -0.1067 0.4728 4.5015 19 6 -0.2819 1.8141 5.1658 20 1 0.2098 2.6859 4.7602 21 6 -1.0707 1.9284 6.2909 22 7 -1.6697 0.8668 6.7846 23 14 -1.2884 3.5911 7.1140 24 1 -0.5159 4.6172 6.3687 25 1 -2.7272 3.9586 7.1142 26 1 -0.7956 3.5192 8.5130 27 1 -0.3633 -1.0193 -0.1314 28 1 -0.3632 0.3957 0.9484 29 1 -0.3634 0.6234 -0.8169 30 1 1.4983 -0.6506 -4.5754 31 1 3.2574 -2.3763 -4.4809 32 1 4.2130 -3.0337 -2.3170 33 1 3.1670 -3.0801 0.4179 34 1 4.6960 -2.3018 -0.0429 35 1 3.6787 -1.5379 2.1811 36 1 4.0694 -0.2380 1.0239 37 1 1.7796 0.9996 3.6035 38 1 0.3611 1.3216 2.5778 39 1 -1.0780 0.0957 4.1818 40 1 0.3401 -0.2266 5.2081 41 1 -2.2243 0.9471 7.5762 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523415911.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:20 Heat of formation + Delta-G solvation = -107.374413 kcal Electronic energy + Delta-G solvation = -26481.878060 eV Core-core repulsion = 22595.538126 eV Total energy + Delta-G solvation = -3886.339934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.99283 -40.94473 -38.47079 -37.86134 -36.99103 -35.93581 -34.36049 -33.15337 -32.47367 -30.66344 -28.55015 -27.63391 -25.28134 -24.57408 -23.47874 -22.71817 -21.67153 -19.77335 -18.88597 -18.37975 -18.06017 -17.71395 -17.51303 -16.95355 -16.70915 -16.56332 -16.53275 -15.99487 -15.72263 -15.14060 -14.85389 -14.71740 -14.50730 -14.30297 -14.17762 -13.80542 -13.74940 -13.36152 -13.27137 -13.07708 -12.96577 -12.94983 -12.78192 -12.62424 -12.42095 -12.30172 -12.22725 -12.06841 -11.98223 -11.76138 -11.34804 -11.15560 -10.67402 -10.10668 -9.70148 -9.52300 -8.27922 -6.42212 -0.77284 0.19279 0.24302 1.39826 1.40533 1.53966 1.64132 2.36656 2.59686 2.78317 3.05419 3.15166 3.23527 3.39502 3.63671 3.73662 3.92230 3.97188 4.01162 4.09768 4.24979 4.27164 4.29782 4.42900 4.52857 4.61720 4.66438 4.75044 4.79725 4.89198 5.02622 5.09841 5.13735 5.18206 5.23703 5.24818 5.38466 5.42824 5.54477 5.58679 5.66452 5.97010 6.03871 6.71333 7.28129 8.84610 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.022581 B = 0.003409 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.692235 B = 8211.873928 C = 8876.903446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.195 3.805 3 H 0.105 0.895 4 C -0.135 4.135 5 C 0.084 3.916 6 F -0.143 7.143 7 C -0.160 4.160 8 C -0.086 4.086 9 C -0.128 4.128 10 C -0.053 4.053 11 C -0.097 4.097 12 C 0.105 3.895 13 N -0.996 5.996 14 S 2.613 3.387 15 O -0.985 6.985 16 O -0.990 6.990 17 C -0.590 4.590 18 C 0.023 3.977 19 C -0.539 4.539 20 H 0.075 0.925 21 C -0.004 4.004 22 N -0.934 5.934 23 Si 0.975 3.025 24 H -0.256 1.256 25 H -0.278 1.278 26 H -0.277 1.277 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.153 0.847 31 H 0.165 0.835 32 H 0.158 0.842 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.006 0.994 40 H 0.006 0.994 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.461 -3.329 -22.508 26.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.090 3.910 3 H 0.123 0.877 4 C -0.138 4.138 5 C 0.064 3.936 6 F -0.121 7.121 7 C -0.179 4.179 8 C -0.104 4.104 9 C -0.146 4.146 10 C -0.053 4.053 11 C -0.135 4.135 12 C -0.019 4.019 13 N -0.834 5.834 14 S 2.712 3.288 15 O -0.975 6.975 16 O -0.980 6.980 17 C -0.721 4.721 18 C -0.016 4.016 19 C -0.578 4.578 20 H 0.093 0.907 21 C -0.202 4.202 22 N -0.573 5.573 23 Si 0.798 3.202 24 H -0.179 1.179 25 H -0.203 1.203 26 H -0.202 1.202 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.171 0.829 31 H 0.183 0.817 32 H 0.175 0.825 33 H 0.094 0.906 34 H 0.145 0.855 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.969 -4.229 -22.134 26.513 hybrid contribution -0.868 1.352 0.906 1.844 sum 13.102 -2.877 -21.228 25.111 Atomic orbital electron populations 1.22845 0.93410 1.04726 1.04038 1.19774 0.93866 0.95734 0.81670 0.87700 1.19841 0.99894 1.00803 0.93213 1.17844 0.90145 0.91006 0.94585 1.91393 1.61235 1.62535 1.96974 1.21384 1.00170 0.99097 0.97204 1.21335 0.94422 0.95309 0.99335 1.21594 1.01314 1.00620 0.91090 1.19616 0.94587 0.94290 0.96800 1.20923 1.03113 0.98596 0.90857 1.21793 0.79737 0.99380 1.00965 1.57757 1.22806 1.74033 1.28831 1.04789 0.73158 0.77608 0.73221 1.93588 1.47404 1.81386 1.75129 1.93462 1.71772 1.63792 1.69007 1.30440 1.10164 1.21346 1.10194 1.18804 0.93102 0.98696 0.91000 1.21532 1.30143 0.94521 1.11597 0.90676 1.26125 0.94954 1.01330 0.97806 1.70104 1.32207 1.31407 1.23613 0.85255 0.78185 0.78568 0.78195 1.17938 1.20335 1.20210 0.91261 0.92483 0.88237 0.82884 0.81707 0.82482 0.90643 0.85518 0.88102 0.87934 0.83992 0.84365 0.97574 0.97525 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.84 7.04 71.98 0.51 -5.33 16 2 C 0.20 5.05 3.38 44.25 0.15 5.20 16 3 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 4 C -0.14 -3.14 5.43 -19.78 -0.11 -3.24 16 5 C 0.08 1.84 6.95 22.45 0.16 1.99 16 6 F -0.14 -3.41 14.06 44.97 0.63 -2.78 16 7 C -0.16 -2.56 10.03 22.26 0.22 -2.34 16 8 C -0.09 -1.05 10.04 22.19 0.22 -0.82 16 9 C -0.13 -1.73 9.59 22.37 0.21 -1.52 16 10 C -0.05 -1.00 5.76 -19.86 -0.11 -1.12 16 11 C -0.10 -1.66 5.87 29.75 0.17 -1.48 16 12 C 0.11 2.19 6.44 86.17 0.55 2.75 16 13 N -1.00 -27.55 3.17 -495.35 -1.57 -29.12 16 14 S 2.61 97.84 4.88 -56.49 -0.28 97.57 16 15 O -0.98 -42.26 13.70 -127.65 -1.75 -44.01 16 16 O -0.99 -41.52 16.37 -127.65 -2.09 -43.61 16 17 C -0.59 -23.16 5.89 71.98 0.42 -22.74 16 18 C 0.02 1.22 4.98 29.85 0.15 1.37 16 19 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 20 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 21 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 22 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 23 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 27 H 0.07 2.39 6.87 -2.38 -0.02 2.38 16 28 H 0.06 1.86 4.88 -2.39 -0.01 1.85 16 29 H 0.10 2.68 5.61 -2.39 -0.01 2.66 16 30 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 32 H 0.16 1.18 8.05 -2.91 -0.02 1.15 16 33 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.13 1.22 8.10 -2.39 -0.02 1.20 16 35 H 0.10 2.24 6.73 -2.39 -0.02 2.22 16 36 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.14 4.88 8.14 -2.40 -0.02 4.86 16 38 H 0.14 4.86 6.97 -2.39 -0.02 4.84 16 39 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -76.62 340.51 1.56 -75.07 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 1.05 Total: 15.31 kcal Atomic # 6 Polarization: -60.35 SS G_CDS: 3.25 Total: -57.10 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -1.28 Total: -86.12 kcal Atomic # 8 Polarization: -83.78 SS G_CDS: -3.84 Total: -87.62 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.63 Total: -2.78 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 97.84 SS G_CDS: -0.28 Total: 97.57 kcal Total: -76.62 1.56 -75.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523415911.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.309 kcal (2) G-P(sol) polarization free energy of solvation -76.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds