Wall clock time and date at job start Tue Mar 31 2020 14:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.43654 * 2 1 4 4 C 1.50806 * 109.43487 * 119.87221 * 2 1 3 5 5 C 1.39050 * 117.80906 * 289.06122 * 4 2 1 6 6 F 1.35101 * 119.77624 * 359.60979 * 5 4 2 7 7 C 1.38189 * 120.45466 * 179.59754 * 5 4 2 8 8 C 1.38220 * 119.68885 * 359.94723 * 7 5 4 9 9 C 1.37920 * 119.85551 * 0.20055 * 8 7 5 10 10 C 1.37638 * 122.36473 * 108.97253 * 4 2 1 11 11 C 1.50605 * 122.86465 * 0.87409 * 10 4 2 12 12 C 1.53319 * 110.81925 * 340.03479 * 11 10 4 13 13 N 1.46691 * 109.43591 * 240.09042 * 2 1 3 14 14 S 1.65595 * 121.34342 * 104.20066 * 13 2 1 15 15 O 1.42093 * 104.27935 * 333.92586 * 14 13 2 16 16 O 1.42105 * 104.27413 * 206.06636 * 14 13 2 17 17 C 1.81401 * 104.44822 * 90.00055 * 14 13 2 18 18 C 1.52997 * 109.47149 * 179.97438 * 17 14 13 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 14 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00432 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46616 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47104 * 119.99966 * 23 21 19 26 26 H 1.48489 * 109.47200 * 240.00246 * 23 21 19 27 27 H 1.08998 * 109.47069 * 179.90742 * 1 2 3 28 28 H 1.08990 * 109.47120 * 299.91716 * 1 2 3 29 29 H 1.09001 * 109.46974 * 59.91245 * 1 2 3 30 30 H 1.08003 * 120.15605 * 179.97438 * 7 5 4 31 31 H 1.08009 * 120.07506 * 180.22222 * 8 7 5 32 32 H 1.07996 * 119.68277 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.20663 * 100.51017 * 11 10 4 34 34 H 1.08999 * 109.20067 * 219.85533 * 11 10 4 35 35 H 1.09001 * 109.90307 * 288.15861 * 12 11 10 36 36 H 1.09005 * 109.92763 * 167.17707 * 12 11 10 37 37 H 1.09002 * 109.47085 * 299.99812 * 17 14 13 38 38 H 1.09001 * 109.47417 * 59.99938 * 17 14 13 39 39 H 1.09002 * 109.47153 * 299.99990 * 18 17 14 40 40 H 1.08998 * 109.47533 * 59.99620 * 18 17 14 41 41 H 0.97002 * 119.99731 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0278 0.0000 4 6 2.0318 -0.7083 1.2332 5 6 1.8689 -0.0715 2.4585 6 9 1.2838 1.1451 2.5098 7 6 2.3011 -0.6747 3.6243 8 6 2.8982 -1.9201 3.5700 9 6 3.0626 -2.5503 2.3543 10 6 2.6334 -1.9451 1.1790 11 6 2.8599 -2.6879 -0.1113 12 6 1.9347 -2.1597 -1.2139 13 7 2.0181 -0.6898 -1.1991 14 16 2.6320 0.1512 -2.4868 15 8 2.0059 1.4241 -2.4046 16 8 2.4113 -0.7032 -3.6006 17 6 4.4056 0.2901 -2.1327 18 6 5.0931 1.0566 -3.2643 19 6 6.5665 1.1726 -2.9699 20 1 6.9721 0.7422 -2.0662 21 6 7.3970 1.8272 -3.8546 22 7 6.9031 2.3509 -4.9553 23 14 9.2232 1.9715 -3.4893 24 1 9.5237 1.3041 -2.1973 25 1 9.9983 1.3190 -4.5750 26 1 9.5994 3.4055 -3.4055 27 1 -0.3633 -1.0276 -0.0017 28 1 -0.3633 0.5125 0.8906 29 1 -0.3633 0.5152 -0.8892 30 1 2.1725 -0.1756 4.5734 31 1 3.2351 -2.3989 4.4777 32 1 3.5292 -3.5235 2.3152 33 1 3.8976 -2.5617 -0.4203 34 1 2.6589 -3.7477 0.0451 35 1 0.9089 -2.4729 -1.0191 36 1 2.2587 -2.5378 -2.1835 37 1 4.5478 0.8239 -1.1930 38 1 4.8395 -0.7067 -2.0536 39 1 4.9509 0.5225 -4.2037 40 1 4.6594 2.0534 -3.3439 41 1 7.4874 2.8111 -5.5780 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523415912.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:24 Heat of formation + Delta-G solvation = -100.745029 kcal Electronic energy + Delta-G solvation = -26487.578442 eV Core-core repulsion = 22601.525979 eV Total energy + Delta-G solvation = -3886.052463 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.05399 -40.16450 -37.00909 -36.71816 -35.46882 -33.90596 -33.34334 -31.60155 -31.16810 -29.73903 -28.02195 -25.60709 -24.07651 -23.85058 -22.15527 -21.68618 -20.30209 -18.38474 -17.88592 -17.17295 -16.75480 -16.43067 -16.28165 -15.84359 -15.51332 -15.45744 -14.88162 -14.56297 -14.25752 -14.23168 -13.93717 -13.43162 -13.27219 -13.21910 -12.70647 -12.53472 -12.49590 -12.25172 -11.96195 -11.77225 -11.69127 -11.62987 -11.58974 -11.51403 -11.13418 -11.10125 -10.96996 -10.70134 -10.40333 -10.39511 -9.78947 -9.37867 -8.99641 -8.91025 -8.73837 -8.51429 -6.13293 -4.18771 0.69488 0.93094 0.96960 2.91785 3.24692 3.31469 3.32000 3.35419 4.00860 4.18217 4.30341 4.37663 4.38892 4.56612 4.64023 4.78609 4.84479 4.95819 5.11350 5.11981 5.19994 5.22101 5.27063 5.34956 5.52113 5.62939 5.67370 5.69747 5.72984 5.79365 5.86156 5.89888 5.98373 6.12299 6.16968 6.34997 6.47462 6.57045 6.67462 7.28665 7.34494 7.79975 8.16644 8.84790 9.46110 10.97810 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.004053 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.902409 B = 6907.048950 C = 7671.905765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.195 3.805 3 H 0.107 0.893 4 C -0.118 4.118 5 C 0.106 3.894 6 F -0.135 7.135 7 C -0.159 4.159 8 C -0.091 4.091 9 C -0.132 4.132 10 C -0.035 4.035 11 C -0.104 4.104 12 C 0.119 3.881 13 N -1.003 6.003 14 S 2.590 3.410 15 O -0.960 6.960 16 O -0.961 6.961 17 C -0.588 4.588 18 C 0.028 3.972 19 C -0.519 4.519 20 H 0.062 0.938 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.049 -11.514 16.607 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.089 3.911 3 H 0.124 0.876 4 C -0.120 4.120 5 C 0.086 3.914 6 F -0.114 7.114 7 C -0.177 4.177 8 C -0.110 4.110 9 C -0.150 4.150 10 C -0.035 4.035 11 C -0.142 4.142 12 C -0.007 4.007 13 N -0.837 5.837 14 S 2.690 3.310 15 O -0.950 6.950 16 O -0.951 6.951 17 C -0.721 4.721 18 C -0.011 4.011 19 C -0.558 4.558 20 H 0.080 0.920 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.588 -11.056 15.678 22.412 hybrid contribution 1.523 0.231 0.766 1.721 sum -10.064 -10.825 16.445 22.111 Atomic orbital electron populations 1.22135 0.93669 1.02554 1.03260 1.19529 0.94941 0.95510 0.81161 0.87566 1.19851 1.02362 0.96049 0.93780 1.17604 0.98103 0.81774 0.93912 1.91505 1.81583 1.41101 1.97180 1.21058 1.02321 0.97067 0.97299 1.20906 0.97710 0.94134 0.98204 1.21251 1.01189 1.00766 0.91788 1.19358 0.95792 0.92803 0.95542 1.21055 1.01685 0.99416 0.92057 1.21518 1.00297 0.79095 0.99769 1.58219 1.77642 1.15316 1.32569 1.05782 0.78669 0.73555 0.73043 1.93544 1.74351 1.41504 1.85641 1.93534 1.85621 1.67047 1.48913 1.30495 1.20480 1.10168 1.10982 1.18972 0.96901 0.94915 0.90313 1.21029 0.91449 1.36520 1.06837 0.92022 1.25065 0.99255 0.95186 0.94944 1.69968 1.35732 1.36410 1.10729 0.86419 0.84604 0.77949 0.78363 1.19662 1.20774 1.20768 0.92067 0.91262 0.90993 0.84717 0.85075 0.85321 0.89188 0.89144 0.90490 0.87800 0.86332 0.86262 0.94843 0.94865 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.23 37.16 0.34 -1.52 16 2 C 0.20 2.60 2.26 -68.92 -0.16 2.44 16 3 H 0.11 1.53 7.33 -51.93 -0.38 1.15 16 4 C -0.12 -1.41 5.17 -104.49 -0.54 -1.95 16 5 C 0.11 1.23 7.01 -39.30 -0.28 0.95 16 6 F -0.14 -1.68 15.62 2.25 0.04 -1.65 16 7 C -0.16 -1.49 10.03 -39.61 -0.40 -1.89 16 8 C -0.09 -0.74 10.04 -39.70 -0.40 -1.14 16 9 C -0.13 -1.13 9.59 -39.42 -0.38 -1.51 16 10 C -0.03 -0.36 5.76 -104.61 -0.60 -0.96 16 11 C -0.10 -0.94 5.88 -27.76 -0.16 -1.11 16 12 C 0.12 1.29 6.31 -3.47 -0.02 1.27 16 13 N -1.00 -13.96 2.83 -107.61 -0.30 -14.27 16 14 S 2.59 47.22 5.45 -107.50 -0.59 46.63 16 15 O -0.96 -20.10 16.94 -57.54 -0.97 -21.08 16 16 O -0.96 -19.54 16.68 -57.54 -0.96 -20.50 16 17 C -0.59 -11.41 6.12 37.16 0.23 -11.18 16 18 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 19 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 20 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 23 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H 0.06 0.63 7.35 -51.93 -0.38 0.25 16 28 H 0.07 0.75 7.03 -51.93 -0.37 0.39 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 31 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 32 H 0.13 0.81 8.05 -52.49 -0.42 0.39 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 35 H 0.08 0.72 7.33 -51.93 -0.38 0.34 16 36 H 0.10 1.14 6.98 -51.93 -0.36 0.78 16 37 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 38 H 0.12 2.05 8.14 -51.92 -0.42 1.62 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -34.36 351.80 -10.32 -44.68 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.64 Total: -0.41 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: -2.91 Total: -29.16 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.43 Total: -40.03 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -1.93 Total: -41.57 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 47.22 SS G_CDS: -0.59 Total: 46.63 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.36 -10.32 -44.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523415912.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.064 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds