Wall clock time and date at job start Tue Mar 31 2020 14:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.43654 * 2 1 4 4 C 1.50806 * 109.43487 * 119.87221 * 2 1 3 5 5 C 1.39050 * 117.80906 * 289.06122 * 4 2 1 6 6 F 1.35101 * 119.77624 * 359.60979 * 5 4 2 7 7 C 1.38189 * 120.45466 * 179.59754 * 5 4 2 8 8 C 1.38220 * 119.68885 * 359.94723 * 7 5 4 9 9 C 1.37920 * 119.85551 * 0.20055 * 8 7 5 10 10 C 1.37638 * 122.36473 * 108.97253 * 4 2 1 11 11 C 1.50605 * 122.86465 * 0.87409 * 10 4 2 12 12 C 1.53319 * 110.81925 * 340.03479 * 11 10 4 13 13 N 1.46691 * 109.43591 * 240.09042 * 2 1 3 14 14 S 1.65595 * 121.34342 * 104.20066 * 13 2 1 15 15 O 1.42093 * 104.27935 * 333.92586 * 14 13 2 16 16 O 1.42105 * 104.27413 * 206.06636 * 14 13 2 17 17 C 1.81401 * 104.44822 * 90.00055 * 14 13 2 18 18 C 1.52997 * 109.47149 * 179.97438 * 17 14 13 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 14 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00432 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46616 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47104 * 119.99966 * 23 21 19 26 26 H 1.48489 * 109.47200 * 240.00246 * 23 21 19 27 27 H 1.08998 * 109.47069 * 179.90742 * 1 2 3 28 28 H 1.08990 * 109.47120 * 299.91716 * 1 2 3 29 29 H 1.09001 * 109.46974 * 59.91245 * 1 2 3 30 30 H 1.08003 * 120.15605 * 179.97438 * 7 5 4 31 31 H 1.08009 * 120.07506 * 180.22222 * 8 7 5 32 32 H 1.07996 * 119.68277 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.20663 * 100.51017 * 11 10 4 34 34 H 1.08999 * 109.20067 * 219.85533 * 11 10 4 35 35 H 1.09001 * 109.90307 * 288.15861 * 12 11 10 36 36 H 1.09005 * 109.92763 * 167.17707 * 12 11 10 37 37 H 1.09002 * 109.47085 * 299.99812 * 17 14 13 38 38 H 1.09001 * 109.47417 * 59.99938 * 17 14 13 39 39 H 1.09002 * 109.47153 * 299.99990 * 18 17 14 40 40 H 1.08998 * 109.47533 * 59.99620 * 18 17 14 41 41 H 0.97002 * 119.99731 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0278 0.0000 4 6 2.0318 -0.7083 1.2332 5 6 1.8689 -0.0715 2.4585 6 9 1.2838 1.1451 2.5098 7 6 2.3011 -0.6747 3.6243 8 6 2.8982 -1.9201 3.5700 9 6 3.0626 -2.5503 2.3543 10 6 2.6334 -1.9451 1.1790 11 6 2.8599 -2.6879 -0.1113 12 6 1.9347 -2.1597 -1.2139 13 7 2.0181 -0.6898 -1.1991 14 16 2.6320 0.1512 -2.4868 15 8 2.0059 1.4241 -2.4046 16 8 2.4113 -0.7032 -3.6006 17 6 4.4056 0.2901 -2.1327 18 6 5.0931 1.0566 -3.2643 19 6 6.5665 1.1726 -2.9699 20 1 6.9721 0.7422 -2.0662 21 6 7.3970 1.8272 -3.8546 22 7 6.9031 2.3509 -4.9553 23 14 9.2232 1.9715 -3.4893 24 1 9.5237 1.3041 -2.1973 25 1 9.9983 1.3190 -4.5750 26 1 9.5994 3.4055 -3.4055 27 1 -0.3633 -1.0276 -0.0017 28 1 -0.3633 0.5125 0.8906 29 1 -0.3633 0.5152 -0.8892 30 1 2.1725 -0.1756 4.5734 31 1 3.2351 -2.3989 4.4777 32 1 3.5292 -3.5235 2.3152 33 1 3.8976 -2.5617 -0.4203 34 1 2.6589 -3.7477 0.0451 35 1 0.9089 -2.4729 -1.0191 36 1 2.2587 -2.5378 -2.1835 37 1 4.5478 0.8239 -1.1930 38 1 4.8395 -0.7067 -2.0536 39 1 4.9509 0.5225 -4.2037 40 1 4.6594 2.0534 -3.3439 41 1 7.4874 2.8111 -5.5780 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523415912.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:23 Heat of formation + Delta-G solvation = -122.851459 kcal Electronic energy + Delta-G solvation = -26488.537048 eV Core-core repulsion = 22601.525979 eV Total energy + Delta-G solvation = -3887.011069 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.91748 -40.96508 -38.30536 -37.89525 -37.06134 -35.92707 -34.17455 -33.15702 -32.47002 -30.49629 -28.93288 -27.61051 -24.91713 -24.72691 -23.60546 -22.88865 -21.36367 -19.66032 -19.16451 -18.56288 -18.04047 -17.56538 -17.25305 -17.00637 -16.75216 -16.56640 -16.53798 -15.95852 -15.32485 -15.06847 -15.01763 -14.80530 -14.48859 -14.21882 -14.06659 -13.76064 -13.54218 -13.44534 -13.26593 -13.22010 -12.97345 -12.96050 -12.82058 -12.77356 -12.65755 -12.33593 -12.29235 -12.14630 -12.06706 -11.82356 -11.53854 -11.13972 -10.67414 -10.13131 -9.70362 -9.51270 -8.27884 -6.42201 -0.79998 0.19868 0.25914 1.39655 1.40496 1.53713 1.61324 2.36586 2.61382 2.77360 3.04897 3.06325 3.25809 3.39573 3.70943 3.76768 3.94004 3.98072 4.02838 4.05820 4.19342 4.26180 4.32750 4.47546 4.50087 4.66501 4.67605 4.70374 4.85622 4.89408 5.06298 5.07336 5.14142 5.20484 5.21965 5.24039 5.26258 5.45306 5.54725 5.58479 5.66080 5.98043 6.03734 6.71121 7.28174 8.84717 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.004053 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.902409 B = 6907.048950 C = 7671.905765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.190 3.810 3 H 0.084 0.916 4 C -0.136 4.136 5 C 0.080 3.920 6 F -0.150 7.150 7 C -0.160 4.160 8 C -0.086 4.086 9 C -0.127 4.127 10 C -0.045 4.045 11 C -0.101 4.101 12 C 0.107 3.893 13 N -0.993 5.993 14 S 2.613 3.387 15 O -0.993 6.993 16 O -0.983 6.983 17 C -0.586 4.586 18 C 0.022 3.978 19 C -0.538 4.538 20 H 0.074 0.926 21 C -0.003 4.003 22 N -0.934 5.934 23 Si 0.974 3.026 24 H -0.256 1.256 25 H -0.275 1.275 26 H -0.279 1.279 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.151 0.849 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.131 0.869 38 H 0.144 0.856 39 H 0.009 0.991 40 H 0.003 0.997 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.001 -14.167 19.329 25.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.084 3.916 3 H 0.102 0.898 4 C -0.138 4.138 5 C 0.061 3.939 6 F -0.128 7.128 7 C -0.179 4.179 8 C -0.103 4.103 9 C -0.145 4.145 10 C -0.045 4.045 11 C -0.139 4.139 12 C -0.016 4.016 13 N -0.830 5.830 14 S 2.712 3.288 15 O -0.984 6.984 16 O -0.974 6.974 17 C -0.718 4.718 18 C -0.017 4.017 19 C -0.577 4.577 20 H 0.092 0.908 21 C -0.201 4.201 22 N -0.574 5.574 23 Si 0.798 3.202 24 H -0.180 1.180 25 H -0.201 1.201 26 H -0.204 1.204 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.169 0.831 31 H 0.181 0.819 32 H 0.176 0.824 33 H 0.108 0.892 34 H 0.144 0.856 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.149 0.851 38 H 0.163 0.837 39 H 0.028 0.972 40 H 0.021 0.979 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.532 -13.716 18.405 25.254 hybrid contribution 1.120 0.996 -0.006 1.499 sum -9.412 -12.720 18.398 24.267 Atomic orbital electron populations 1.22112 0.92827 1.03533 1.02814 1.19580 0.95707 0.94749 0.81562 0.89805 1.19769 1.04110 0.97047 0.92874 1.17911 0.99456 0.81751 0.94808 1.91464 1.82041 1.42042 1.97277 1.21354 1.01743 0.97680 0.97139 1.21331 0.96218 0.93324 0.99456 1.21605 1.00095 1.01693 0.91066 1.19577 0.95747 0.92316 0.96858 1.21112 1.01023 1.01149 0.90621 1.21888 1.02263 0.76713 1.00786 1.57803 1.76736 1.16742 1.31741 1.04764 0.77848 0.72839 0.73347 1.93495 1.74708 1.43742 1.86427 1.93495 1.85683 1.67420 1.50762 1.30392 1.21705 1.10728 1.08966 1.18818 0.97167 0.93990 0.91728 1.21509 0.92529 1.36395 1.07262 0.90762 1.26114 1.04723 0.94658 0.94609 1.70111 1.37799 1.37442 1.12004 0.85258 0.78021 0.78078 0.78869 1.17973 1.20095 1.20420 0.90320 0.90608 0.92508 0.83143 0.81879 0.82382 0.89176 0.85590 0.88517 0.87956 0.85082 0.83742 0.97235 0.97860 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.23 71.98 0.66 -2.98 16 2 C 0.19 5.07 2.26 44.24 0.10 5.17 16 3 H 0.08 2.56 7.33 -2.39 -0.02 2.54 16 4 C -0.14 -3.06 5.17 -19.78 -0.10 -3.16 16 5 C 0.08 1.78 7.01 22.45 0.16 1.94 16 6 F -0.15 -3.78 15.62 44.97 0.70 -3.08 16 7 C -0.16 -2.62 10.03 22.25 0.22 -2.40 16 8 C -0.09 -1.04 10.04 22.19 0.22 -0.82 16 9 C -0.13 -1.63 9.59 22.37 0.21 -1.42 16 10 C -0.04 -0.79 5.76 -19.86 -0.11 -0.90 16 11 C -0.10 -1.50 5.88 29.93 0.18 -1.33 16 12 C 0.11 2.13 6.31 86.35 0.55 2.68 16 13 N -0.99 -27.27 2.83 -494.36 -1.40 -28.67 16 14 S 2.61 98.03 5.45 -56.49 -0.31 97.72 16 15 O -0.99 -43.74 16.94 -127.65 -2.16 -45.90 16 16 O -0.98 -40.88 16.68 -127.65 -2.13 -43.01 16 17 C -0.59 -23.06 6.12 71.98 0.44 -22.62 16 18 C 0.02 1.17 4.98 29.85 0.15 1.32 16 19 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 20 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 21 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 22 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 23 Si 0.97 43.47 29.54 68.60 2.03 45.50 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 27 H 0.08 1.54 7.35 -2.39 -0.02 1.52 16 28 H 0.08 1.67 7.03 -2.39 -0.02 1.65 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 32 H 0.16 1.10 8.05 -2.91 -0.02 1.08 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.13 1.01 8.11 -2.39 -0.02 0.99 16 35 H 0.10 1.56 7.33 -2.39 -0.02 1.54 16 36 H 0.10 2.09 6.98 -2.38 -0.02 2.07 16 37 H 0.13 4.77 8.14 -2.39 -0.02 4.75 16 38 H 0.14 4.85 8.14 -2.39 -0.02 4.83 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -77.04 351.80 1.42 -75.62 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 1.04 Total: 12.90 kcal Atomic # 6 Polarization: -57.52 SS G_CDS: 3.37 Total: -54.15 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -1.11 Total: -85.59 kcal Atomic # 8 Polarization: -84.62 SS G_CDS: -4.29 Total: -88.91 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.70 Total: -3.08 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 98.03 SS G_CDS: -0.31 Total: 97.72 kcal Total: -77.04 1.42 -75.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523415912.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.231 kcal (2) G-P(sol) polarization free energy of solvation -77.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds