Wall clock time and date at job start Tue Mar 31 2020 15:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34776 * 119.99850 * 2 1 4 4 O 1.21290 * 119.99725 * 185.27780 * 3 2 1 5 5 C 1.50694 * 120.00352 * 5.27851 * 3 2 1 6 6 S 1.80996 * 109.47529 * 179.97438 * 5 3 2 7 7 C 1.76204 * 100.00093 * 180.02562 * 6 5 3 8 8 H 1.07991 * 120.00286 * 359.97438 * 7 6 5 9 9 C 1.38804 * 119.99772 * 179.97438 * 7 6 5 10 10 N 1.31625 * 119.99735 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00153 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47196 * 89.99542 * 11 9 7 13 13 H 1.48496 * 109.47136 * 209.99827 * 11 9 7 14 14 H 1.48504 * 109.46771 * 330.00008 * 11 9 7 15 15 C 1.39828 * 120.00065 * 180.02562 * 2 1 3 16 16 C 1.38978 * 119.94543 * 292.79171 * 15 2 1 17 17 C 1.37866 * 120.04971 * 180.02562 * 16 15 2 18 18 C 1.39404 * 119.94984 * 359.97438 * 17 16 15 19 19 C 1.48348 * 120.04772 * 179.97438 * 18 17 16 20 20 C 1.39363 * 120.11859 * 180.02562 * 19 18 17 21 21 C 1.38013 * 119.87467 * 180.02562 * 20 19 18 22 22 C 1.38326 * 120.11932 * 359.97438 * 21 20 19 23 23 C 1.38320 * 120.25156 * 0.29564 * 22 21 20 24 24 C 1.38018 * 120.12333 * 359.45049 * 23 22 21 25 25 C 1.39402 * 119.89657 * 0.25231 * 18 17 16 26 26 C 1.37870 * 119.94628 * 359.47338 * 25 18 17 27 27 H 1.08997 * 109.47048 * 269.99771 * 1 2 3 28 28 H 1.09001 * 109.47002 * 29.99434 * 1 2 3 29 29 H 1.09001 * 109.47092 * 149.99399 * 1 2 3 30 30 H 1.09002 * 109.47485 * 299.99914 * 5 3 2 31 31 H 1.09007 * 109.47151 * 59.99455 * 5 3 2 32 32 H 0.97002 * 120.00148 * 180.02562 * 10 9 7 33 33 H 1.08004 * 119.97479 * 359.97438 * 16 15 2 34 34 H 1.08001 * 120.02618 * 179.97438 * 17 16 15 35 35 H 1.07996 * 120.06242 * 359.97438 * 20 19 18 36 36 H 1.07990 * 119.93709 * 179.97438 * 21 20 19 37 37 H 1.08006 * 119.87312 * 180.02562 * 22 21 20 38 38 H 1.08000 * 119.93934 * 179.72714 * 23 22 21 39 39 H 1.07994 * 120.06009 * 180.25624 * 24 23 22 40 40 H 1.07993 * 120.02165 * 179.74508 * 25 18 17 41 41 H 1.08002 * 119.96799 * 180.27608 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3479 1.1694 -0.0966 5 6 1.3903 2.4695 0.1201 6 16 2.5652 3.8459 0.0904 7 6 1.4512 5.2026 0.2428 8 1 0.3890 5.0232 0.3190 9 6 1.9389 6.5019 0.2651 10 7 1.1067 7.5154 0.3784 11 14 3.7762 6.8124 0.1327 12 1 4.1515 6.9603 -1.2965 13 1 4.1222 8.0560 0.8666 14 1 4.5154 5.6674 0.7226 15 6 2.1642 -1.2109 -0.0005 16 6 2.1071 -2.0455 1.1093 17 6 2.7960 -3.2397 1.1113 18 6 3.5499 -3.6101 -0.0013 19 6 4.2925 -4.8943 -0.0013 20 6 5.0471 -5.2658 -1.1125 21 6 5.7355 -6.4619 -1.1073 22 6 5.6780 -7.2911 -0.0016 23 6 4.9262 -6.9300 1.1019 24 6 4.2379 -5.7337 1.1097 25 6 3.6095 -2.7691 -1.1115 26 6 2.9143 -1.5785 -1.1111 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 0.6948 2.5671 -0.7136 31 1 0.8365 2.4851 1.0589 32 1 1.4474 8.4234 0.3936 33 1 1.5232 -1.7579 1.9712 34 1 2.7517 -3.8877 1.9741 35 1 5.0923 -4.6193 -1.9764 36 1 6.3202 -6.7510 -1.9680 37 1 6.2187 -8.2261 -0.0016 38 1 4.8813 -7.5833 1.9607 39 1 3.6545 -5.4509 1.9734 40 1 4.1962 -3.0522 -1.9728 41 1 2.9567 -0.9288 -1.9728 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525715746.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:31 Heat of formation + Delta-G solvation = 24.123978 kcal Electronic energy + Delta-G solvation = -23303.487030 eV Core-core repulsion = 19853.618518 eV Total energy + Delta-G solvation = -3449.868511 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57278 -39.60222 -38.07447 -35.50690 -32.57115 -32.46103 -31.76455 -30.75411 -29.94842 -28.20138 -26.61135 -25.63946 -23.82337 -23.60943 -21.71046 -21.40985 -19.70946 -17.95923 -17.68233 -17.07459 -16.33121 -16.21884 -16.08191 -15.13393 -15.02575 -14.65007 -14.44731 -14.24887 -14.07553 -13.87194 -13.59052 -13.36318 -13.27007 -13.16387 -12.81383 -12.63545 -12.48047 -12.24010 -12.06070 -11.73484 -11.38672 -11.28569 -11.02838 -10.96170 -10.66218 -9.98706 -9.86921 -9.60521 -9.26625 -9.11255 -9.02715 -8.95801 -8.53040 -8.04545 -6.95583 -6.31155 -4.03506 0.40706 1.09276 1.26204 1.62461 2.62433 2.81587 3.13041 3.31655 3.35291 3.49193 3.55410 3.82989 4.31029 4.34336 4.43794 4.59805 4.63500 4.69985 4.85416 4.87475 4.95527 5.07821 5.07944 5.10834 5.15992 5.19821 5.29015 5.44822 5.48558 5.57400 5.58017 5.67135 5.72155 5.87465 5.95147 5.96407 6.03730 6.19294 6.22714 6.34892 6.46714 6.49978 6.66404 6.95102 7.27240 7.91755 8.33777 8.39095 9.14900 10.77917 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.026993 B = 0.002210 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.066941 B =12664.663890 C =13210.242347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.585 5.585 3 C 0.533 3.467 4 O -0.502 6.502 5 C -0.120 4.120 6 S -0.142 6.142 7 C -0.521 4.521 8 H 0.089 0.911 9 C 0.096 3.904 10 N -0.879 5.879 11 Si 0.856 3.144 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.235 1.235 15 C 0.155 3.845 16 C -0.119 4.119 17 C -0.100 4.100 18 C -0.056 4.056 19 C -0.038 4.038 20 C -0.112 4.112 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.113 4.113 25 C -0.098 4.098 26 C -0.101 4.101 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.271 0.729 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.088 -29.522 -0.836 29.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.318 5.318 3 C 0.321 3.679 4 O -0.375 6.375 5 C -0.270 4.270 6 S 0.085 5.915 7 C -0.669 4.669 8 H 0.107 0.893 9 C -0.113 4.113 10 N -0.516 5.516 11 Si 0.681 3.319 12 H -0.192 1.192 13 H -0.199 1.199 14 H -0.159 1.159 15 C 0.064 3.936 16 C -0.138 4.138 17 C -0.118 4.118 18 C -0.056 4.056 19 C -0.038 4.038 20 C -0.130 4.130 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.136 4.136 24 C -0.131 4.131 25 C -0.116 4.116 26 C -0.121 4.121 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.828 -29.255 -0.966 29.520 hybrid contribution -0.862 0.488 0.095 0.996 sum 2.966 -28.766 -0.870 28.932 Atomic orbital electron populations 1.21897 0.78118 1.03727 1.02446 1.45468 1.07091 1.03705 1.75537 1.20485 0.87935 0.84243 0.75201 1.90730 1.13904 1.86489 1.46341 1.23311 1.03159 0.94730 1.05805 1.84832 1.12304 0.97672 1.96728 1.22294 0.95244 0.90985 1.58379 0.89325 1.24708 0.98519 0.94876 0.93173 1.69933 1.34903 0.99017 1.47705 0.86742 0.85379 0.80008 0.79781 1.19185 1.19898 1.15921 1.17656 0.95874 0.86545 0.93550 1.21159 1.00697 0.94826 0.97166 1.21025 0.96765 0.96322 0.97733 1.18759 0.98206 0.93776 0.94834 1.18812 0.97090 0.93436 0.94443 1.21287 0.96901 0.96851 0.97986 1.21104 0.99449 0.94482 0.98511 1.21215 0.99356 0.99803 0.93809 1.21096 0.97377 0.96633 0.98499 1.21261 0.99723 0.94245 0.97851 1.21074 0.98956 0.93648 0.97967 1.21221 0.97033 0.96072 0.97770 0.92126 0.89932 0.90907 0.88275 0.88208 0.91911 0.85461 0.85420 0.85607 0.85885 0.86110 0.85914 0.85664 0.85412 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.10 59.85 0.60 1.41 16 2 N -0.59 -8.28 2.92 -120.79 -0.35 -8.63 16 3 C 0.53 9.77 7.57 -10.99 -0.08 9.69 16 4 O -0.50 -11.09 15.41 5.55 0.09 -11.01 16 5 C -0.12 -2.30 4.83 36.00 0.17 -2.13 16 6 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 7 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 10 N -0.88 -26.35 13.97 55.49 0.78 -25.57 16 11 Si 0.86 21.73 27.74 -169.99 -4.72 17.02 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 15 C 0.15 2.10 4.82 -83.67 -0.40 1.70 16 16 C -0.12 -1.39 9.83 -39.44 -0.39 -1.77 16 17 C -0.10 -1.05 9.42 -39.28 -0.37 -1.42 16 18 C -0.06 -0.61 5.88 -104.87 -0.62 -1.22 16 19 C -0.04 -0.37 5.88 -104.90 -0.62 -0.99 16 20 C -0.11 -1.00 9.43 -39.25 -0.37 -1.37 16 21 C -0.12 -0.91 10.03 -39.63 -0.40 -1.30 16 22 C -0.12 -0.90 10.04 -39.52 -0.40 -1.30 16 23 C -0.12 -0.89 10.03 -39.63 -0.40 -1.29 16 24 C -0.11 -0.97 9.43 -39.25 -0.37 -1.34 16 25 C -0.10 -1.11 9.42 -39.28 -0.37 -1.48 16 26 C -0.10 -1.34 9.29 -39.45 -0.37 -1.71 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.80 6.48 -51.93 -0.34 0.47 16 29 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 30 H 0.10 1.74 7.24 -51.92 -0.38 1.37 16 31 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 32 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.13 1.02 6.20 -52.49 -0.33 0.69 16 35 H 0.13 0.96 6.20 -52.49 -0.33 0.63 16 36 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.62 8.06 -52.48 -0.42 0.19 16 38 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.88 6.20 -52.49 -0.33 0.55 16 40 H 0.13 1.17 6.20 -52.49 -0.33 0.85 16 41 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -34.57 360.56 -9.89 -44.46 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.97 Total: 0.29 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -4.15 Total: -16.42 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.42 Total: -34.20 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.72 Total: 17.02 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.57 -9.89 -44.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525715746.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.583 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds