Wall clock time and date at job start Tue Mar 31 2020 15:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34776 * 119.99850 * 2 1 4 4 O 1.21290 * 119.99725 * 185.27780 * 3 2 1 5 5 C 1.50694 * 120.00352 * 5.27851 * 3 2 1 6 6 S 1.80996 * 109.47529 * 179.97438 * 5 3 2 7 7 C 1.76204 * 100.00093 * 180.02562 * 6 5 3 8 8 H 1.07991 * 120.00286 * 359.97438 * 7 6 5 9 9 C 1.38804 * 119.99772 * 179.97438 * 7 6 5 10 10 N 1.31625 * 119.99735 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00153 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47196 * 89.99542 * 11 9 7 13 13 H 1.48496 * 109.47136 * 209.99827 * 11 9 7 14 14 H 1.48504 * 109.46771 * 330.00008 * 11 9 7 15 15 C 1.39828 * 120.00065 * 180.02562 * 2 1 3 16 16 C 1.38978 * 119.94543 * 292.79171 * 15 2 1 17 17 C 1.37866 * 120.04971 * 180.02562 * 16 15 2 18 18 C 1.39404 * 119.94984 * 359.97438 * 17 16 15 19 19 C 1.48348 * 120.04772 * 179.97438 * 18 17 16 20 20 C 1.39363 * 120.11859 * 180.02562 * 19 18 17 21 21 C 1.38013 * 119.87467 * 180.02562 * 20 19 18 22 22 C 1.38326 * 120.11932 * 359.97438 * 21 20 19 23 23 C 1.38320 * 120.25156 * 0.29564 * 22 21 20 24 24 C 1.38018 * 120.12333 * 359.45049 * 23 22 21 25 25 C 1.39402 * 119.89657 * 0.25231 * 18 17 16 26 26 C 1.37870 * 119.94628 * 359.47338 * 25 18 17 27 27 H 1.08997 * 109.47048 * 269.99771 * 1 2 3 28 28 H 1.09001 * 109.47002 * 29.99434 * 1 2 3 29 29 H 1.09001 * 109.47092 * 149.99399 * 1 2 3 30 30 H 1.09002 * 109.47485 * 299.99914 * 5 3 2 31 31 H 1.09007 * 109.47151 * 59.99455 * 5 3 2 32 32 H 0.97002 * 120.00148 * 180.02562 * 10 9 7 33 33 H 1.08004 * 119.97479 * 359.97438 * 16 15 2 34 34 H 1.08001 * 120.02618 * 179.97438 * 17 16 15 35 35 H 1.07996 * 120.06242 * 359.97438 * 20 19 18 36 36 H 1.07990 * 119.93709 * 179.97438 * 21 20 19 37 37 H 1.08006 * 119.87312 * 180.02562 * 22 21 20 38 38 H 1.08000 * 119.93934 * 179.72714 * 23 22 21 39 39 H 1.07994 * 120.06009 * 180.25624 * 24 23 22 40 40 H 1.07993 * 120.02165 * 179.74508 * 25 18 17 41 41 H 1.08002 * 119.96799 * 180.27608 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3479 1.1694 -0.0966 5 6 1.3903 2.4695 0.1201 6 16 2.5652 3.8459 0.0904 7 6 1.4512 5.2026 0.2428 8 1 0.3890 5.0232 0.3190 9 6 1.9389 6.5019 0.2651 10 7 1.1067 7.5154 0.3784 11 14 3.7762 6.8124 0.1327 12 1 4.1515 6.9603 -1.2965 13 1 4.1222 8.0560 0.8666 14 1 4.5154 5.6674 0.7226 15 6 2.1642 -1.2109 -0.0005 16 6 2.1071 -2.0455 1.1093 17 6 2.7960 -3.2397 1.1113 18 6 3.5499 -3.6101 -0.0013 19 6 4.2925 -4.8943 -0.0013 20 6 5.0471 -5.2658 -1.1125 21 6 5.7355 -6.4619 -1.1073 22 6 5.6780 -7.2911 -0.0016 23 6 4.9262 -6.9300 1.1019 24 6 4.2379 -5.7337 1.1097 25 6 3.6095 -2.7691 -1.1115 26 6 2.9143 -1.5785 -1.1111 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 0.6948 2.5671 -0.7136 31 1 0.8365 2.4851 1.0589 32 1 1.4474 8.4234 0.3936 33 1 1.5232 -1.7579 1.9712 34 1 2.7517 -3.8877 1.9741 35 1 5.0923 -4.6193 -1.9764 36 1 6.3202 -6.7510 -1.9680 37 1 6.2187 -8.2261 -0.0016 38 1 4.8813 -7.5833 1.9607 39 1 3.6545 -5.4509 1.9734 40 1 4.1962 -3.0522 -1.9728 41 1 2.9567 -0.9288 -1.9728 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525715746.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:29 Heat of formation + Delta-G solvation = 5.731233 kcal Electronic energy + Delta-G solvation = -23304.284599 eV Core-core repulsion = 19853.618518 eV Total energy + Delta-G solvation = -3450.666081 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.64487 -40.45169 -39.01173 -36.66842 -34.68273 -33.40605 -32.50130 -31.46927 -31.19874 -29.18318 -27.87975 -27.53639 -24.62979 -24.43042 -22.44486 -22.24908 -20.89808 -19.69420 -18.78895 -18.15161 -17.56271 -17.18616 -17.10748 -16.89372 -16.11229 -16.04279 -15.28314 -15.20542 -15.12384 -14.90343 -14.78927 -14.60562 -14.28344 -14.18139 -13.94198 -13.69562 -13.44499 -13.34509 -13.24611 -13.03523 -12.94984 -12.67140 -12.48302 -12.02095 -11.88712 -11.65170 -11.18338 -11.11464 -10.74781 -10.54887 -10.00491 -9.97068 -9.84793 -9.03101 -8.87107 -8.52540 -6.23917 -0.37076 0.37630 0.50993 0.83092 0.96141 1.30079 1.40423 1.44916 1.51729 1.97861 2.23702 2.58271 2.66529 2.85629 3.10132 3.57268 3.62175 3.73498 3.90897 4.07062 4.11161 4.16278 4.18769 4.26456 4.35039 4.37934 4.39841 4.53611 4.58778 4.65220 4.76896 4.85144 4.91696 4.96373 5.17146 5.22758 5.29895 5.40461 5.53243 5.58038 5.62606 5.69950 5.76487 5.96519 6.07429 6.10096 6.10857 6.92582 6.99771 8.59584 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.026993 B = 0.002210 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.066941 B =12664.663890 C =13210.242347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.571 5.571 3 C 0.534 3.466 4 O -0.549 6.549 5 C -0.103 4.103 6 S -0.178 6.178 7 C -0.527 4.527 8 H 0.065 0.935 9 C 0.047 3.953 10 N -0.914 5.914 11 Si 0.912 3.088 12 H -0.262 1.262 13 H -0.258 1.258 14 H -0.239 1.239 15 C 0.125 3.875 16 C -0.118 4.118 17 C -0.100 4.100 18 C -0.053 4.053 19 C -0.062 4.062 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.105 4.105 26 C -0.117 4.117 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.277 0.723 33 H 0.143 0.857 34 H 0.155 0.845 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.542 -32.340 -0.174 32.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.302 5.302 3 C 0.323 3.677 4 O -0.426 6.426 5 C -0.254 4.254 6 S 0.049 5.951 7 C -0.675 4.675 8 H 0.083 0.917 9 C -0.159 4.159 10 N -0.552 5.552 11 Si 0.734 3.266 12 H -0.187 1.187 13 H -0.183 1.183 14 H -0.163 1.163 15 C 0.035 3.965 16 C -0.138 4.138 17 C -0.119 4.119 18 C -0.053 4.053 19 C -0.062 4.062 20 C -0.143 4.143 21 C -0.144 4.144 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.138 4.138 25 C -0.124 4.124 26 C -0.137 4.137 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.087 0.913 33 H 0.161 0.839 34 H 0.172 0.828 35 H 0.148 0.852 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.234 -32.106 -0.303 32.385 hybrid contribution -1.071 1.093 -0.119 1.534 sum 3.164 -31.013 -0.422 31.177 Atomic orbital electron populations 1.22220 0.75575 1.05031 1.04164 1.45366 1.08567 1.02718 1.73512 1.20245 0.87278 0.84992 0.75203 1.90707 1.15652 1.87164 1.49077 1.23267 1.01783 0.92853 1.07487 1.84780 1.14264 0.99175 1.96871 1.22425 0.94807 0.92465 1.57766 0.91662 1.25530 1.02548 0.94820 0.92982 1.70006 1.36782 0.99642 1.48795 0.85896 0.80463 0.80166 0.80034 1.18718 1.18266 1.16263 1.17870 0.97312 0.86661 0.94706 1.21327 1.00781 0.94809 0.96859 1.21343 0.95887 0.96190 0.98433 1.19008 0.97669 0.94069 0.94577 1.18902 0.98250 0.93473 0.95618 1.21493 0.97128 0.97623 0.98089 1.21401 0.99363 0.94093 0.99521 1.21596 0.98816 1.00465 0.93376 1.21433 0.96833 0.96539 0.99400 1.21508 0.99948 0.94487 0.97862 1.21257 0.98922 0.93197 0.98981 1.21236 0.97943 0.96818 0.97706 0.90134 0.89658 0.88687 0.86469 0.86565 0.91344 0.83916 0.82753 0.85157 0.84030 0.83792 0.83645 0.84314 0.83964 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 10.10 127.77 1.29 2.56 16 2 N -0.57 -15.61 2.92 -654.46 -1.91 -17.52 16 3 C 0.53 19.47 7.57 87.66 0.66 20.14 16 4 O -0.55 -24.66 15.41 -3.06 -0.05 -24.70 16 5 C -0.10 -3.93 4.83 71.23 0.34 -3.58 16 6 S -0.18 -9.03 18.55 -56.49 -1.05 -10.08 16 7 C -0.53 -30.54 10.04 67.96 0.68 -29.86 16 8 H 0.07 3.96 8.03 -2.91 -0.02 3.93 16 9 C 0.05 2.75 5.50 84.86 0.47 3.21 16 10 N -0.91 -55.40 13.97 21.65 0.30 -55.10 16 11 Si 0.91 45.13 27.74 68.60 1.90 47.04 16 12 H -0.26 -12.68 7.11 99.48 0.71 -11.98 16 13 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 14 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 15 C 0.12 3.32 4.82 38.22 0.18 3.50 16 16 C -0.12 -2.57 9.83 22.36 0.22 -2.35 16 17 C -0.10 -1.91 9.42 22.46 0.21 -1.70 16 18 C -0.05 -1.10 5.88 -20.02 -0.12 -1.22 16 19 C -0.06 -1.15 5.88 -20.05 -0.12 -1.26 16 20 C -0.13 -2.09 9.43 22.49 0.21 -1.87 16 21 C -0.13 -1.69 10.03 22.24 0.22 -1.47 16 22 C -0.12 -1.48 10.04 22.31 0.22 -1.26 16 23 C -0.12 -1.53 10.03 22.24 0.22 -1.31 16 24 C -0.12 -1.81 9.43 22.49 0.21 -1.59 16 25 C -0.11 -2.38 9.42 22.46 0.21 -2.16 16 26 C -0.12 -3.14 9.29 22.36 0.21 -2.93 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.50 6.48 -2.39 -0.02 1.48 16 29 H 0.09 1.32 8.05 -2.39 -0.02 1.30 16 30 H 0.12 4.03 7.24 -2.39 -0.02 4.01 16 31 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 32 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 34 H 0.15 2.02 6.20 -2.91 -0.02 2.00 16 35 H 0.13 1.90 6.20 -2.91 -0.02 1.88 16 36 H 0.14 1.27 8.06 -2.92 -0.02 1.25 16 37 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 38 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 39 H 0.14 1.56 6.20 -2.91 -0.02 1.54 16 40 H 0.14 2.61 6.20 -2.91 -0.02 2.60 16 41 H 0.11 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -75.83 360.56 5.55 -70.28 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 1.01 Total: 13.25 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 5.34 Total: -23.16 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -1.61 Total: -72.62 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.04 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -75.83 5.55 -70.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525715746.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.013 kcal (2) G-P(sol) polarization free energy of solvation -75.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds