Wall clock time and date at job start Tue Mar 31 2020 15:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81395 * 109.47096 * 2 1 4 4 C 1.76202 * 103.00389 * 179.97438 * 3 2 1 5 5 C 1.39060 * 120.03654 * 359.97438 * 4 3 2 6 6 C 1.38119 * 120.06009 * 180.02562 * 5 4 3 7 7 C 1.38185 * 120.15649 * 359.97438 * 6 5 4 8 8 C 1.38966 * 120.08486 * 0.02562 * 7 6 5 9 9 N 1.39807 * 120.03211 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00174 * 144.84177 * 9 8 7 11 11 O 1.21603 * 119.99647 * 4.31467 * 10 9 8 12 12 C 1.47589 * 120.00252 * 184.31991 * 10 9 8 13 13 C 1.40039 * 119.89794 * 359.71656 * 12 10 9 14 14 C 1.36303 * 120.10837 * 179.76091 * 13 12 10 15 15 C 1.40904 * 119.89049 * 0.51883 * 14 13 12 16 16 C 1.41082 * 120.10223 * 179.71429 * 15 14 13 17 17 H 1.08001 * 120.00646 * 214.78752 * 16 15 14 18 18 C 1.40239 * 119.99793 * 34.78725 * 16 15 14 19 19 N 1.30636 * 119.99935 * 355.60610 * 18 16 15 20 20 Si 1.86806 * 119.99835 * 175.60313 * 18 16 15 21 21 H 1.48503 * 109.46746 * 60.00286 * 20 18 16 22 22 H 1.48497 * 109.46623 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47043 * 300.00170 * 20 18 16 24 24 C 1.40895 * 119.79556 * 359.74257 * 15 14 13 25 25 C 1.36303 * 119.89506 * 359.97438 * 24 15 14 26 26 C 1.38761 * 119.93303 * 359.97438 * 8 7 6 27 27 H 1.09000 * 109.47122 * 60.00973 * 1 2 3 28 28 H 1.09003 * 109.46625 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47402 * 300.00122 * 1 2 3 30 30 H 1.08999 * 109.47534 * 239.99346 * 2 1 3 31 31 H 1.09008 * 109.47127 * 119.99324 * 2 1 3 32 32 H 1.07990 * 119.97245 * 0.02562 * 5 4 3 33 33 H 1.08006 * 119.92101 * 179.97438 * 6 5 4 34 34 H 1.08001 * 119.96070 * 179.97438 * 7 6 5 35 35 H 0.97000 * 120.00006 * 324.83871 * 9 8 7 36 36 H 1.08007 * 119.94645 * 0.02562 * 13 12 10 37 37 H 1.07998 * 120.05546 * 180.25750 * 14 13 12 38 38 H 0.97002 * 120.00211 * 179.97438 * 19 18 16 39 39 H 1.08003 * 120.05470 * 179.97438 * 24 15 14 40 40 H 1.08003 * 119.95143 * 179.97438 * 25 24 15 41 41 H 1.08008 * 120.07799 * 179.72607 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.8854 1.5118 0.0008 5 6 4.4415 0.2372 0.0017 6 6 5.8138 0.0810 0.0029 7 6 6.6386 1.1897 0.0025 8 6 6.0897 2.4664 0.0016 9 7 6.9252 3.5873 0.0017 10 6 6.5634 4.6976 -0.6711 11 8 5.4761 4.7530 -1.2127 12 6 7.4868 5.8462 -0.7506 13 6 8.7361 5.7823 -0.1211 14 6 9.5943 6.8386 -0.1959 15 6 9.2182 8.0004 -0.8988 16 6 10.1005 9.0987 -0.9740 17 1 9.7104 10.1058 -0.9757 18 6 11.4843 8.8827 -1.0464 19 7 11.9616 7.6699 -0.9579 20 14 12.6449 10.3294 -1.2696 21 1 12.4877 11.2702 -0.1314 22 1 14.0454 9.8376 -1.3163 23 1 12.3242 11.0300 -2.5390 24 6 7.9580 8.0622 -1.5259 25 6 7.1089 6.9986 -1.4506 26 6 4.7114 2.6274 0.0004 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.7998 -0.6314 0.0016 33 1 6.2433 -0.9100 0.0040 34 1 7.7113 1.0640 0.0038 35 1 7.7653 3.5659 0.4862 36 1 9.0219 4.8928 0.4209 37 1 10.5592 6.7868 0.2864 38 1 12.9187 7.5205 -1.0084 39 1 7.6653 8.9508 -2.0655 40 1 6.1425 7.0451 -1.9306 41 1 4.2822 3.6186 0.0041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533948480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:44 Heat of formation + Delta-G solvation = -0.132032 kcal Electronic energy + Delta-G solvation = -23359.555955 eV Core-core repulsion = 19908.635624 eV Total energy + Delta-G solvation = -3450.920331 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.14699 -38.36179 -37.11887 -34.43678 -33.87143 -33.18131 -30.95683 -30.68588 -29.54087 -29.12199 -25.99598 -24.28925 -22.93527 -22.65016 -21.58580 -20.95326 -19.68920 -18.13882 -17.55547 -16.75056 -16.44122 -15.96898 -15.43997 -15.16304 -15.05088 -14.75861 -14.35969 -14.07520 -13.92746 -13.52550 -13.21879 -12.91580 -12.84117 -12.67155 -12.37073 -12.20045 -11.92969 -11.81707 -11.77519 -11.56796 -11.27657 -11.26562 -11.02685 -10.69035 -10.35649 -10.18115 -10.07374 -9.63119 -9.55149 -9.47888 -9.08671 -8.06499 -7.80944 -7.50047 -7.40760 -6.94259 -4.70203 1.19834 1.40713 1.42019 2.10571 2.35467 2.91349 2.93630 2.94758 2.96673 3.51328 3.59061 3.74712 3.91525 4.52823 4.57619 4.61261 4.86718 4.98700 5.10689 5.22184 5.37069 5.43477 5.43852 5.51154 5.57774 5.66457 5.72922 5.93587 5.96639 6.22042 6.29148 6.38523 6.45715 6.57147 6.69428 6.81081 6.92016 7.06052 7.16606 7.38904 7.52199 7.68488 7.81210 7.97289 8.02323 8.36220 8.59438 8.67637 8.80367 9.94048 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.033018 B = 0.002161 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.812454 B =12955.655444 C =13690.048314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 S -0.115 6.115 4 C -0.067 4.067 5 C -0.161 4.161 6 C -0.083 4.083 7 C -0.158 4.158 8 C 0.182 3.818 9 N -0.682 5.682 10 C 0.570 3.430 11 O -0.550 6.550 12 C -0.275 4.275 13 C -0.068 4.068 14 C -0.165 4.165 15 C 0.127 3.873 16 C -0.445 4.445 17 H 0.083 0.917 18 C 0.069 3.931 19 N -0.790 5.790 20 Si 0.922 3.078 21 H -0.262 1.262 22 H -0.276 1.276 23 H -0.263 1.263 24 C -0.228 4.228 25 C -0.026 4.026 26 C -0.104 4.104 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.410 0.590 36 H 0.090 0.910 37 H 0.133 0.867 38 H 0.285 0.715 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.696 -14.133 3.831 17.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.262 4.262 3 S 0.128 5.872 4 C -0.180 4.180 5 C -0.186 4.186 6 C -0.103 4.103 7 C -0.181 4.181 8 C 0.084 3.916 9 N -0.327 5.327 10 C 0.366 3.634 11 O -0.430 6.430 12 C -0.280 4.280 13 C -0.088 4.088 14 C -0.185 4.185 15 C 0.124 3.876 16 C -0.474 4.474 17 H 0.101 0.899 18 C -0.150 4.150 19 N -0.414 5.414 20 Si 0.746 3.254 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.187 1.187 24 C -0.247 4.247 25 C -0.045 4.045 26 C -0.130 4.130 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.248 0.752 36 H 0.108 0.892 37 H 0.150 0.850 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.964 -13.174 3.425 17.478 hybrid contribution 2.017 -0.703 0.008 2.136 sum -8.947 -13.876 3.433 16.864 Atomic orbital electron populations 1.21509 0.91917 1.02746 1.03377 1.23592 1.00365 0.96820 1.05443 1.85666 0.98110 1.10777 1.92672 1.21527 0.96507 0.95963 1.04028 1.21005 0.95767 0.95172 1.06649 1.20741 0.92698 0.98133 0.98718 1.20975 1.00186 0.91013 1.05962 1.17689 0.89903 0.86847 0.97123 1.43638 1.23527 1.12664 1.52862 1.18792 0.86632 0.81826 0.76107 1.90663 1.23271 1.81712 1.47393 1.18853 0.97021 0.95822 1.16276 1.20561 0.93076 0.97472 0.97647 1.21276 1.00246 0.94421 1.02537 1.17880 0.90678 0.92876 0.86198 1.19773 0.90640 0.94649 1.42331 0.89861 1.26079 0.99316 0.97224 0.92337 1.69652 1.15646 1.21686 1.34451 0.86131 0.78256 0.80847 0.80209 1.18659 1.20095 1.18716 1.20861 0.97555 0.99006 1.07310 1.20389 0.97492 0.91916 0.94710 1.20930 0.91523 0.98858 1.01679 0.91497 0.90906 0.91550 0.89510 0.89544 0.86266 0.85645 0.85508 0.75236 0.89174 0.84973 0.90368 0.88079 0.87843 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.92 37.16 0.37 -0.56 16 2 C -0.11 -0.97 5.05 37.16 0.19 -0.78 16 3 S -0.11 -1.46 21.92 -107.50 -2.36 -3.82 16 4 C -0.07 -0.97 6.11 -39.06 -0.24 -1.21 16 5 C -0.16 -1.96 9.36 -39.32 -0.37 -2.33 16 6 C -0.08 -0.95 10.03 -39.64 -0.40 -1.35 16 7 C -0.16 -2.08 9.96 -39.33 -0.39 -2.48 16 8 C 0.18 2.95 6.29 -83.76 -0.53 2.42 16 9 N -0.68 -11.62 5.28 -10.81 -0.06 -11.67 16 10 C 0.57 11.87 7.60 -12.45 -0.09 11.78 16 11 O -0.55 -12.72 13.77 5.28 0.07 -12.65 16 12 C -0.28 -6.08 5.89 -104.73 -0.62 -6.70 16 13 C -0.07 -1.46 9.47 -39.60 -0.37 -1.84 16 14 C -0.17 -3.94 8.61 -39.27 -0.34 -4.28 16 15 C 0.13 3.16 5.55 -106.80 -0.59 2.56 16 16 C -0.45 -10.89 9.03 -37.75 -0.34 -11.23 16 17 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 18 C 0.07 1.60 5.42 -17.31 -0.09 1.51 16 19 N -0.79 -18.71 10.59 55.56 0.59 -18.13 16 20 Si 0.92 17.32 29.56 -169.99 -5.03 12.30 16 21 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 22 H -0.28 -5.07 7.11 56.52 0.40 -4.66 16 23 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 24 C -0.23 -5.37 9.73 -39.27 -0.38 -5.75 16 25 C -0.03 -0.59 9.52 -39.60 -0.38 -0.97 16 26 C -0.10 -1.78 8.42 -39.17 -0.33 -2.11 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.69 7.75 -51.92 -0.40 0.29 16 31 H 0.09 0.65 7.74 -51.92 -0.40 0.25 16 32 H 0.12 1.14 5.87 -52.49 -0.31 0.83 16 33 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.41 5.97 6.83 -40.82 -0.28 5.69 16 36 H 0.09 1.60 6.38 -52.48 -0.33 1.27 16 37 H 0.13 3.22 6.13 -52.49 -0.32 2.90 16 38 H 0.28 6.15 8.29 -40.82 -0.34 5.81 16 39 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 40 H 0.10 2.28 7.63 -52.48 -0.40 1.88 16 41 H 0.15 2.83 6.25 -52.48 -0.33 2.50 16 LS Contribution 357.75 15.07 5.39 5.39 Total: -1.00 -28.03 357.75 -11.16 -39.18 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -4.86 Total: 12.70 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -4.91 Total: -23.31 kcal Atomic # 7 Polarization: -30.33 SS G_CDS: 0.53 Total: -29.80 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.07 Total: -12.65 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.30 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.36 Total: -3.82 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.03 -11.16 -39.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533948480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.052 kcal (2) G-P(sol) polarization free energy of solvation -28.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds