Wall clock time and date at job start Tue Mar 31 2020 15:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81395 * 109.47096 * 2 1 4 4 C 1.76202 * 103.00389 * 179.97438 * 3 2 1 5 5 C 1.39060 * 120.03654 * 359.97438 * 4 3 2 6 6 C 1.38119 * 120.06009 * 180.02562 * 5 4 3 7 7 C 1.38185 * 120.15649 * 359.97438 * 6 5 4 8 8 C 1.38966 * 120.08486 * 0.02562 * 7 6 5 9 9 N 1.39807 * 120.03211 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00174 * 144.84177 * 9 8 7 11 11 O 1.21603 * 119.99647 * 4.31467 * 10 9 8 12 12 C 1.47589 * 120.00252 * 184.31991 * 10 9 8 13 13 C 1.40039 * 119.89794 * 359.71656 * 12 10 9 14 14 C 1.36303 * 120.10837 * 179.76091 * 13 12 10 15 15 C 1.40904 * 119.89049 * 0.51883 * 14 13 12 16 16 C 1.41082 * 120.10223 * 179.71429 * 15 14 13 17 17 H 1.08001 * 120.00646 * 214.78752 * 16 15 14 18 18 C 1.40239 * 119.99793 * 34.78725 * 16 15 14 19 19 N 1.30636 * 119.99935 * 355.60610 * 18 16 15 20 20 Si 1.86806 * 119.99835 * 175.60313 * 18 16 15 21 21 H 1.48503 * 109.46746 * 60.00286 * 20 18 16 22 22 H 1.48497 * 109.46623 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47043 * 300.00170 * 20 18 16 24 24 C 1.40895 * 119.79556 * 359.74257 * 15 14 13 25 25 C 1.36303 * 119.89506 * 359.97438 * 24 15 14 26 26 C 1.38761 * 119.93303 * 359.97438 * 8 7 6 27 27 H 1.09000 * 109.47122 * 60.00973 * 1 2 3 28 28 H 1.09003 * 109.46625 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47402 * 300.00122 * 1 2 3 30 30 H 1.08999 * 109.47534 * 239.99346 * 2 1 3 31 31 H 1.09008 * 109.47127 * 119.99324 * 2 1 3 32 32 H 1.07990 * 119.97245 * 0.02562 * 5 4 3 33 33 H 1.08006 * 119.92101 * 179.97438 * 6 5 4 34 34 H 1.08001 * 119.96070 * 179.97438 * 7 6 5 35 35 H 0.97000 * 120.00006 * 324.83871 * 9 8 7 36 36 H 1.08007 * 119.94645 * 0.02562 * 13 12 10 37 37 H 1.07998 * 120.05546 * 180.25750 * 14 13 12 38 38 H 0.97002 * 120.00211 * 179.97438 * 19 18 16 39 39 H 1.08003 * 120.05470 * 179.97438 * 24 15 14 40 40 H 1.08003 * 119.95143 * 179.97438 * 25 24 15 41 41 H 1.08008 * 120.07799 * 179.72607 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.8854 1.5118 0.0008 5 6 4.4415 0.2372 0.0017 6 6 5.8138 0.0810 0.0029 7 6 6.6386 1.1897 0.0025 8 6 6.0897 2.4664 0.0016 9 7 6.9252 3.5873 0.0017 10 6 6.5634 4.6976 -0.6711 11 8 5.4761 4.7530 -1.2127 12 6 7.4868 5.8462 -0.7506 13 6 8.7361 5.7823 -0.1211 14 6 9.5943 6.8386 -0.1959 15 6 9.2182 8.0004 -0.8988 16 6 10.1005 9.0987 -0.9740 17 1 9.7104 10.1058 -0.9757 18 6 11.4843 8.8827 -1.0464 19 7 11.9616 7.6699 -0.9579 20 14 12.6449 10.3294 -1.2696 21 1 12.4877 11.2702 -0.1314 22 1 14.0454 9.8376 -1.3163 23 1 12.3242 11.0300 -2.5390 24 6 7.9580 8.0622 -1.5259 25 6 7.1089 6.9986 -1.4506 26 6 4.7114 2.6274 0.0004 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.7998 -0.6314 0.0016 33 1 6.2433 -0.9100 0.0040 34 1 7.7113 1.0640 0.0038 35 1 7.7653 3.5659 0.4862 36 1 9.0219 4.8928 0.4209 37 1 10.5592 6.7868 0.2864 38 1 12.9187 7.5205 -1.0084 39 1 7.6653 8.9508 -2.0655 40 1 6.1425 7.0451 -1.9306 41 1 4.2822 3.6186 0.0041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533948480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:44 Heat of formation + Delta-G solvation = -12.955915 kcal Electronic energy + Delta-G solvation = -23360.112040 eV Core-core repulsion = 19908.635624 eV Total energy + Delta-G solvation = -3451.476416 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.56478 -39.77169 -38.76504 -35.85882 -35.62479 -33.81523 -32.32528 -32.00372 -31.34905 -30.45329 -27.71218 -25.18062 -24.29537 -23.63266 -23.07761 -22.64589 -21.23588 -19.50373 -19.26861 -18.23431 -17.42185 -17.31123 -16.93017 -16.34842 -15.97904 -15.80579 -15.76310 -15.59739 -15.28585 -15.05641 -14.60458 -14.43703 -14.06836 -13.93666 -13.65873 -13.35737 -13.35280 -13.15482 -12.84793 -12.80893 -12.66125 -12.44949 -12.35730 -12.15239 -11.78116 -11.55619 -11.42096 -11.19696 -11.11307 -10.74253 -10.55196 -9.63625 -9.44582 -9.17884 -8.67653 -8.42617 -6.54849 0.05372 0.26852 0.48985 0.51511 1.09908 1.40303 1.43853 1.48981 1.51907 2.03007 2.14662 2.18509 2.67799 2.81331 3.60344 3.88845 3.98858 4.00472 4.06974 4.11357 4.21818 4.25708 4.39365 4.45887 4.53347 4.54601 4.80662 4.84737 4.88520 4.89606 5.02814 5.10143 5.20458 5.22177 5.26166 5.32805 5.35577 5.46509 5.58664 5.75289 5.89016 5.97312 5.99267 6.21094 6.49178 6.54593 6.77699 6.85074 7.23310 8.23117 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.033018 B = 0.002161 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.812454 B =12955.655444 C =13690.048314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 S -0.169 6.169 4 C -0.075 4.075 5 C -0.152 4.152 6 C -0.073 4.073 7 C -0.153 4.153 8 C 0.151 3.849 9 N -0.667 5.667 10 C 0.570 3.430 11 O -0.580 6.580 12 C -0.280 4.280 13 C -0.058 4.058 14 C -0.184 4.184 15 C 0.099 3.901 16 C -0.477 4.477 17 H 0.084 0.916 18 C 0.032 3.968 19 N -0.814 5.814 20 Si 0.992 3.008 21 H -0.257 1.257 22 H -0.265 1.265 23 H -0.263 1.263 24 C -0.240 4.240 25 C -0.038 4.038 26 C -0.134 4.134 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.152 0.848 33 H 0.169 0.831 34 H 0.152 0.848 35 H 0.422 0.578 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.293 0.707 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.083 -17.277 4.276 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.246 4.246 3 S 0.073 5.927 4 C -0.189 4.189 5 C -0.177 4.177 6 C -0.093 4.093 7 C -0.175 4.175 8 C 0.055 3.945 9 N -0.313 5.313 10 C 0.366 3.634 11 O -0.462 6.462 12 C -0.285 4.285 13 C -0.077 4.077 14 C -0.204 4.204 15 C 0.096 3.904 16 C -0.505 4.505 17 H 0.102 0.898 18 C -0.185 4.185 19 N -0.439 5.439 20 Si 0.813 3.187 21 H -0.181 1.181 22 H -0.189 1.189 23 H -0.187 1.187 24 C -0.259 4.259 25 C -0.057 4.057 26 C -0.160 4.160 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.169 0.831 33 H 0.187 0.813 34 H 0.170 0.830 35 H 0.261 0.739 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.356 -16.358 3.896 19.749 hybrid contribution 1.660 0.063 -0.104 1.664 sum -8.697 -16.295 3.792 18.856 Atomic orbital electron populations 1.21552 0.90650 1.04287 1.02961 1.23729 1.01166 0.93002 1.06699 1.85883 0.98117 1.16042 1.92618 1.21661 0.96824 0.96321 1.04058 1.21455 0.96766 0.94954 1.04494 1.21265 0.92220 0.99474 0.96297 1.21299 1.01814 0.89879 1.04550 1.17942 0.89524 0.87558 0.99464 1.43335 1.23960 1.12058 1.51915 1.18604 0.85898 0.82539 0.76381 1.90656 1.24287 1.82426 1.48846 1.19110 0.97585 0.96118 1.15670 1.20827 0.92031 0.98061 0.96752 1.21295 1.00562 0.95164 1.03353 1.18231 0.91343 0.93882 0.86959 1.20025 0.91841 0.94650 1.43999 0.89784 1.26915 1.00194 0.99933 0.91431 1.69692 1.16500 1.23315 1.34427 0.85078 0.76294 0.77351 0.80025 1.18095 1.18947 1.18705 1.20989 0.97593 0.99570 1.07739 1.20531 0.97566 0.92407 0.95189 1.20767 0.92601 0.98253 1.04333 0.92138 0.88126 0.91873 0.88348 0.87944 0.83057 0.81336 0.82998 0.73901 0.85453 0.85692 0.89540 0.87425 0.87763 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.92 71.98 0.71 -0.80 16 2 C -0.10 -1.40 5.05 71.98 0.36 -1.04 16 3 S -0.17 -4.31 21.92 -56.49 -1.24 -5.55 16 4 C -0.08 -2.15 6.11 22.61 0.14 -2.01 16 5 C -0.15 -3.20 9.36 22.44 0.21 -2.99 16 6 C -0.07 -1.36 10.03 22.23 0.22 -1.14 16 7 C -0.15 -3.57 9.96 22.43 0.22 -3.35 16 8 C 0.15 4.82 6.29 38.17 0.24 5.06 16 9 N -0.67 -22.60 5.28 -306.37 -1.62 -24.22 16 10 C 0.57 24.36 7.60 86.71 0.66 25.02 16 11 O -0.58 -28.09 13.77 -4.04 -0.06 -28.15 16 12 C -0.28 -12.67 5.89 -19.94 -0.12 -12.79 16 13 C -0.06 -2.48 9.47 22.26 0.21 -2.27 16 14 C -0.18 -8.98 8.61 22.47 0.19 -8.79 16 15 C 0.10 5.09 5.55 -21.28 -0.12 4.98 16 16 C -0.48 -23.98 9.03 23.45 0.21 -23.77 16 17 H 0.08 4.04 7.85 -2.91 -0.02 4.02 16 18 C 0.03 1.47 5.42 85.36 0.46 1.93 16 19 N -0.81 -38.86 10.59 21.87 0.23 -38.63 16 20 Si 0.99 35.26 29.56 68.60 2.03 37.28 16 21 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 22 H -0.27 -8.87 7.11 99.48 0.71 -8.17 16 23 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 24 C -0.24 -11.76 9.73 22.47 0.22 -11.54 16 25 C -0.04 -1.80 9.52 22.25 0.21 -1.59 16 26 C -0.13 -4.69 8.42 22.53 0.19 -4.50 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 1.21 7.75 -2.39 -0.02 1.20 16 31 H 0.10 1.17 7.74 -2.39 -0.02 1.15 16 32 H 0.15 2.16 5.87 -2.92 -0.02 2.14 16 33 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 35 H 0.42 11.75 6.83 -92.71 -0.63 11.12 16 36 H 0.13 4.36 6.38 -2.91 -0.02 4.34 16 37 H 0.13 6.22 6.13 -2.91 -0.02 6.20 16 38 H 0.29 12.58 8.29 -92.71 -0.77 11.82 16 39 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 40 H 0.10 4.85 7.63 -2.91 -0.02 4.83 16 41 H 0.11 4.58 6.25 -2.91 -0.02 4.56 16 Total: -1.00 -64.86 357.75 4.02 -60.84 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: 0.44 Total: 38.00 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 4.24 Total: -39.58 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -1.38 Total: -62.85 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.06 Total: -28.15 kcal Atomic # 14 Polarization: 35.26 SS G_CDS: 2.03 Total: 37.28 kcal Atomic # 16 Polarization: -4.31 SS G_CDS: -1.24 Total: -5.55 kcal Total: -64.86 4.02 -60.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533948480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.886 kcal (2) G-P(sol) polarization free energy of solvation -64.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds