Wall clock time and date at job start Tue Mar 31 2020 14:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47199 * 2 1 4 4 N 1.46501 * 109.47343 * 120.00229 * 2 1 3 5 5 C 1.46503 * 119.99428 * 293.36530 * 4 2 1 6 6 C 1.50703 * 109.47239 * 269.99598 * 5 4 2 7 7 H 1.08001 * 119.99374 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00278 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99936 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00155 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47239 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46972 * 119.99872 * 10 8 6 13 13 H 1.48502 * 109.47510 * 240.00094 * 10 8 6 14 14 C 1.34773 * 120.00407 * 113.36132 * 4 2 1 15 15 O 1.21589 * 119.99907 * 182.60015 * 14 4 2 16 16 C 1.47608 * 119.99890 * 2.60205 * 14 4 2 17 17 C 1.39702 * 120.07858 * 313.10369 * 16 14 4 18 18 C 1.37767 * 120.00115 * 180.02562 * 17 16 14 19 19 C 1.38853 * 120.22128 * 0.23788 * 18 17 16 20 20 C 1.39546 * 120.05365 * 359.50082 * 19 18 17 21 21 C 1.38125 * 119.98064 * 0.51317 * 20 19 18 22 22 O 1.36541 * 108.59278 * 180.28132 * 20 19 18 23 23 C 1.44294 * 105.35053 * 342.37710 * 22 20 19 24 24 F 1.39891 * 110.97161 * 268.93673 * 23 22 20 25 25 F 1.39898 * 110.43543 * 146.03207 * 23 22 20 26 26 O 1.36359 * 131.35511 * 179.78137 * 19 18 17 27 27 H 1.08998 * 109.47286 * 300.00151 * 1 2 3 28 28 H 1.09006 * 109.47013 * 59.99897 * 1 2 3 29 29 H 1.09002 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47286 * 239.99849 * 2 1 3 31 31 H 1.09002 * 109.47207 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47222 * 299.99984 * 3 2 1 33 33 H 1.09002 * 109.46875 * 60.00201 * 3 2 1 34 34 H 1.09000 * 109.47501 * 29.99910 * 5 4 2 35 35 H 1.09007 * 109.46738 * 149.99852 * 5 4 2 36 36 H 0.97003 * 120.00172 * 179.97438 * 9 8 6 37 37 H 1.08002 * 120.00419 * 0.02562 * 17 16 14 38 38 H 1.08002 * 119.88929 * 179.97438 * 18 17 16 39 39 H 1.07997 * 120.04999 * 179.71302 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7881 -0.1111 2.5218 6 6 2.9388 0.7930 2.8816 7 1 3.7598 0.9225 2.1919 8 6 2.9441 1.4539 4.0916 9 7 1.9446 1.2957 4.9317 10 14 4.3709 2.5739 4.5379 11 1 5.3600 2.5809 3.4302 12 1 3.8669 3.9531 4.7596 13 1 5.0198 2.0786 5.7784 14 6 2.6793 -1.8591 1.0770 15 8 3.0432 -2.4559 2.0719 16 6 2.9616 -2.4143 -0.2612 17 6 1.9516 -2.4660 -1.2251 18 6 2.2167 -2.9849 -2.4734 19 6 3.4847 -3.4624 -2.7770 20 6 4.4993 -3.4086 -1.8204 21 6 4.2393 -2.8896 -0.5670 22 8 5.6384 -3.9290 -2.3643 23 6 5.2027 -4.6816 -3.5157 24 9 4.9439 -6.0134 -3.1748 25 9 6.1593 -4.6134 -4.5343 26 8 3.9898 -4.0169 -3.9157 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 0.8629 0.4652 2.5108 35 1 1.7095 -0.9102 3.2590 36 1 1.9485 1.7604 5.7831 37 1 0.9630 -2.0991 -0.9916 38 1 1.4344 -3.0244 -3.2171 39 1 5.0224 -2.8517 0.1757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562640646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:55 Heat of formation + Delta-G solvation = -163.329679 kcal Electronic energy + Delta-G solvation = -28295.456680 eV Core-core repulsion = 23840.477167 eV Total energy + Delta-G solvation = -4454.979513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.77585 -48.23495 -42.52301 -39.91571 -37.40356 -37.28557 -36.17331 -32.92850 -31.20101 -30.94301 -30.49976 -27.45271 -26.78618 -25.57811 -24.32451 -23.59162 -22.66538 -21.58825 -19.77796 -19.55670 -19.07225 -18.60396 -17.58552 -16.65234 -16.52246 -16.00697 -15.77196 -15.40195 -14.96795 -14.94244 -14.61782 -14.50318 -14.43567 -14.28777 -14.19352 -13.86066 -13.82601 -13.49925 -13.46042 -12.98179 -12.57895 -12.38965 -11.95321 -11.79820 -11.70117 -11.54637 -11.24131 -11.00885 -10.91440 -10.65118 -10.44817 -10.10380 -9.61796 -9.31279 -9.22102 -8.69036 -8.47682 -7.81012 -6.09369 -4.13106 0.45962 0.79909 1.34713 1.85903 2.91168 3.26674 3.32378 3.35658 3.41166 3.57694 3.68281 3.78176 3.87002 4.39946 4.45690 4.58048 4.65529 4.77558 5.02845 5.16128 5.25527 5.42665 5.49778 5.54891 5.63670 5.66813 5.76351 5.90498 5.99801 6.06520 6.18400 6.30228 6.44246 6.52316 6.90771 6.98389 7.36152 7.42858 7.86821 8.16786 8.24282 8.75710 8.93846 9.51455 10.98876 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.003300 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.026425 B = 8483.978179 C = 9100.345521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.117 3.883 3 C -0.154 4.154 4 N -0.578 5.578 5 C 0.246 3.754 6 C -0.522 4.522 7 H 0.060 0.940 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.548 3.452 15 O -0.527 6.527 16 C -0.090 4.090 17 C -0.076 4.076 18 C -0.087 4.087 19 C 0.034 3.966 20 C 0.020 3.980 21 C -0.035 4.035 22 O -0.283 6.283 23 C 0.569 3.431 24 F -0.153 7.153 25 F -0.118 7.118 26 O -0.287 6.287 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.157 0.843 38 H 0.149 0.851 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.846 -7.435 -18.385 19.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.013 3.987 3 C -0.212 4.212 4 N -0.309 5.309 5 C 0.127 3.873 6 C -0.561 4.561 7 H 0.078 0.922 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.723 3.277 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.333 3.667 15 O -0.404 6.404 16 C -0.094 4.094 17 C -0.095 4.095 18 C -0.105 4.105 19 C -0.010 4.010 20 C -0.024 4.024 21 C -0.054 4.054 22 O -0.203 6.203 23 C 0.461 3.539 24 F -0.135 7.135 25 F -0.099 7.099 26 O -0.206 6.206 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.174 0.826 38 H 0.167 0.833 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.552 -7.689 -17.834 19.429 hybrid contribution 1.153 0.387 -0.029 1.217 sum 0.602 -7.302 -17.863 19.307 Atomic orbital electron populations 1.22231 0.95462 1.01736 1.02923 1.21406 0.94069 0.94846 0.88417 1.22093 1.01759 0.95082 1.02274 1.48300 1.53243 1.19888 1.09487 1.19332 0.96947 0.94072 0.76910 1.21448 1.05938 1.26255 1.02459 0.92206 1.24910 0.96120 0.96962 0.96031 1.69933 1.30992 1.43035 1.09314 0.86488 0.82456 0.80198 0.78570 1.19793 1.21002 1.20914 1.17836 0.79780 0.82011 0.87082 1.90818 1.51964 1.59713 1.37936 1.20124 0.93128 1.00059 0.96051 1.21429 1.00339 0.96731 0.90982 1.20018 0.92218 1.00461 0.97804 1.19752 0.95519 1.02347 0.83382 1.19332 0.83215 1.04380 0.95451 1.20080 0.97367 0.96167 0.91818 1.87730 1.27988 1.63734 1.40862 1.21957 0.77296 0.77450 0.77238 1.93274 1.93375 1.35143 1.91727 1.93243 1.62423 1.96256 1.58019 1.87568 1.37208 1.66489 1.29355 0.91109 0.91843 0.92809 0.89730 0.92395 0.93143 0.90098 0.94451 0.93694 0.92757 0.82596 0.83309 0.82940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 8.82 37.15 0.33 -1.71 16 2 C 0.12 1.71 2.42 -67.93 -0.16 1.54 16 3 C -0.15 -2.38 8.33 37.16 0.31 -2.07 16 4 N -0.58 -11.17 2.38 -168.66 -0.40 -11.57 16 5 C 0.25 5.93 4.45 -5.19 -0.02 5.91 16 6 C -0.52 -13.79 7.86 -34.44 -0.27 -14.06 16 7 H 0.06 1.59 7.51 -52.49 -0.39 1.19 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 10 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.55 10.70 7.25 -12.44 -0.09 10.61 16 15 O -0.53 -12.62 16.57 5.29 0.09 -12.54 16 16 C -0.09 -1.34 5.08 -104.97 -0.53 -1.87 16 17 C -0.08 -0.86 7.29 -39.21 -0.29 -1.14 16 18 C -0.09 -0.85 10.04 -39.53 -0.40 -1.25 16 19 C 0.03 0.41 7.15 -38.87 -0.28 0.13 16 20 C 0.02 0.27 7.13 -39.14 -0.28 -0.01 16 21 C -0.04 -0.51 9.71 -39.07 -0.38 -0.88 16 22 O -0.28 -3.80 11.37 -45.82 -0.52 -4.32 16 23 C 0.57 6.81 3.69 101.05 0.37 7.18 16 24 F -0.15 -1.81 17.57 2.25 0.04 -1.77 16 25 F -0.12 -1.31 17.56 2.25 0.04 -1.27 16 26 O -0.29 -3.43 11.33 -45.23 -0.51 -3.94 16 27 H 0.07 1.02 6.95 -51.93 -0.36 0.65 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.60 7.03 -51.93 -0.37 0.23 16 30 H 0.08 1.05 4.31 -51.93 -0.22 0.83 16 31 H 0.06 0.97 7.93 -51.93 -0.41 0.56 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.47 6.92 -51.93 -0.36 1.11 16 34 H 0.04 0.91 6.73 -51.93 -0.35 0.56 16 35 H 0.05 1.25 7.39 -51.92 -0.38 0.86 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.16 1.49 5.26 -52.49 -0.28 1.21 16 38 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.15 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -30.55 336.35 -6.22 -36.77 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -3.95 Total: -1.79 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -1.79 Total: 3.96 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.33 Total: -36.27 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.95 Total: -20.80 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.08 Total: -3.04 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.55 -6.22 -36.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562640646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.562 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds