Wall clock time and date at job start Tue Mar 31 2020 14:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47199 * 2 1 4 4 N 1.46501 * 109.47343 * 120.00229 * 2 1 3 5 5 C 1.46503 * 119.99428 * 293.36530 * 4 2 1 6 6 C 1.50703 * 109.47239 * 269.99598 * 5 4 2 7 7 H 1.08001 * 119.99374 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00278 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99936 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00155 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47239 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46972 * 119.99872 * 10 8 6 13 13 H 1.48502 * 109.47510 * 240.00094 * 10 8 6 14 14 C 1.34773 * 120.00407 * 113.36132 * 4 2 1 15 15 O 1.21589 * 119.99907 * 182.60015 * 14 4 2 16 16 C 1.47608 * 119.99890 * 2.60205 * 14 4 2 17 17 C 1.39702 * 120.07858 * 313.10369 * 16 14 4 18 18 C 1.37767 * 120.00115 * 180.02562 * 17 16 14 19 19 C 1.38853 * 120.22128 * 0.23788 * 18 17 16 20 20 C 1.39546 * 120.05365 * 359.50082 * 19 18 17 21 21 C 1.38125 * 119.98064 * 0.51317 * 20 19 18 22 22 O 1.36541 * 108.59278 * 180.28132 * 20 19 18 23 23 C 1.44294 * 105.35053 * 342.37710 * 22 20 19 24 24 F 1.39891 * 110.97161 * 268.93673 * 23 22 20 25 25 F 1.39898 * 110.43543 * 146.03207 * 23 22 20 26 26 O 1.36359 * 131.35511 * 179.78137 * 19 18 17 27 27 H 1.08998 * 109.47286 * 300.00151 * 1 2 3 28 28 H 1.09006 * 109.47013 * 59.99897 * 1 2 3 29 29 H 1.09002 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47286 * 239.99849 * 2 1 3 31 31 H 1.09002 * 109.47207 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47222 * 299.99984 * 3 2 1 33 33 H 1.09002 * 109.46875 * 60.00201 * 3 2 1 34 34 H 1.09000 * 109.47501 * 29.99910 * 5 4 2 35 35 H 1.09007 * 109.46738 * 149.99852 * 5 4 2 36 36 H 0.97003 * 120.00172 * 179.97438 * 9 8 6 37 37 H 1.08002 * 120.00419 * 0.02562 * 17 16 14 38 38 H 1.08002 * 119.88929 * 179.97438 * 18 17 16 39 39 H 1.07997 * 120.04999 * 179.71302 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7881 -0.1111 2.5218 6 6 2.9388 0.7930 2.8816 7 1 3.7598 0.9225 2.1919 8 6 2.9441 1.4539 4.0916 9 7 1.9446 1.2957 4.9317 10 14 4.3709 2.5739 4.5379 11 1 5.3600 2.5809 3.4302 12 1 3.8669 3.9531 4.7596 13 1 5.0198 2.0786 5.7784 14 6 2.6793 -1.8591 1.0770 15 8 3.0432 -2.4559 2.0719 16 6 2.9616 -2.4143 -0.2612 17 6 1.9516 -2.4660 -1.2251 18 6 2.2167 -2.9849 -2.4734 19 6 3.4847 -3.4624 -2.7770 20 6 4.4993 -3.4086 -1.8204 21 6 4.2393 -2.8896 -0.5670 22 8 5.6384 -3.9290 -2.3643 23 6 5.2027 -4.6816 -3.5157 24 9 4.9439 -6.0134 -3.1748 25 9 6.1593 -4.6134 -4.5343 26 8 3.9898 -4.0169 -3.9157 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 0.8629 0.4652 2.5108 35 1 1.7095 -0.9102 3.2590 36 1 1.9485 1.7604 5.7831 37 1 0.9630 -2.0991 -0.9916 38 1 1.4344 -3.0244 -3.2171 39 1 5.0224 -2.8517 0.1757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562640646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:54 Heat of formation + Delta-G solvation = -182.300247 kcal Electronic energy + Delta-G solvation = -28296.279306 eV Core-core repulsion = 23840.477167 eV Total energy + Delta-G solvation = -4455.802138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.69623 -49.15379 -43.50349 -41.30694 -38.57317 -38.26553 -37.67708 -34.92932 -32.50808 -32.13273 -31.67525 -29.21609 -27.92932 -26.61224 -25.68018 -24.75067 -24.13308 -22.86043 -20.97000 -20.50774 -20.02046 -19.78559 -18.76908 -18.59221 -17.79012 -17.21924 -17.01152 -16.64565 -16.34459 -15.95887 -15.85821 -15.75760 -15.40940 -15.34704 -15.19813 -15.15368 -14.96794 -14.78608 -14.45321 -14.30986 -14.14429 -13.70589 -13.37605 -13.20769 -13.03839 -12.83406 -12.71749 -12.57267 -12.49003 -12.20165 -12.07518 -11.62940 -11.51653 -10.84464 -10.60238 -10.25079 -9.74806 -9.47141 -8.19157 -6.30195 -0.57865 -0.17069 0.39753 0.87434 1.36697 1.39474 1.49782 1.67116 2.04945 2.39193 2.43141 2.63095 2.73222 2.90618 3.11668 3.39354 3.50203 3.67371 3.80431 4.01751 4.06334 4.29954 4.44204 4.54413 4.59639 4.73665 4.80530 4.88792 4.93504 5.02636 5.05499 5.09275 5.15314 5.27309 5.46922 5.51225 5.58813 5.65901 5.85319 6.10743 6.67706 6.78401 7.23621 7.41535 8.88438 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.003300 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.026425 B = 8483.978179 C = 9100.345521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.109 3.891 3 C -0.151 4.151 4 N -0.581 5.581 5 C 0.264 3.736 6 C -0.527 4.527 7 H 0.053 0.947 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.957 3.043 11 H -0.269 1.269 12 H -0.271 1.271 13 H -0.285 1.285 14 C 0.543 3.457 15 O -0.587 6.587 16 C -0.106 4.106 17 C -0.060 4.060 18 C -0.059 4.059 19 C 0.038 3.962 20 C 0.009 3.991 21 C -0.047 4.047 22 O -0.297 6.297 23 C 0.571 3.429 24 F -0.152 7.152 25 F -0.113 7.113 26 O -0.281 6.281 27 H 0.042 0.958 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.037 0.963 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.034 0.966 35 H -0.002 1.002 36 H 0.265 0.735 37 H 0.181 0.819 38 H 0.198 0.802 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.823 -7.129 -21.911 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.007 3.993 3 C -0.209 4.209 4 N -0.310 5.310 5 C 0.143 3.857 6 C -0.566 4.566 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.567 5.567 10 Si 0.782 3.218 11 H -0.193 1.193 12 H -0.196 1.196 13 H -0.211 1.211 14 C 0.331 3.669 15 O -0.469 6.469 16 C -0.109 4.109 17 C -0.078 4.078 18 C -0.077 4.077 19 C -0.006 4.006 20 C -0.035 4.035 21 C -0.066 4.066 22 O -0.217 6.217 23 C 0.463 3.537 24 F -0.134 7.134 25 F -0.094 7.094 26 O -0.200 6.200 27 H 0.061 0.939 28 H 0.122 0.878 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.016 0.984 36 H 0.074 0.926 37 H 0.198 0.802 38 H 0.215 0.785 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.540 -7.366 -21.416 22.700 hybrid contribution 1.463 0.242 0.984 1.780 sum -0.077 -7.125 -20.432 21.638 Atomic orbital electron populations 1.22221 0.93100 1.03043 1.03518 1.21841 0.95924 0.94171 0.87318 1.22056 1.00482 0.95749 1.02617 1.48293 1.53288 1.20117 1.09310 1.18741 0.96128 0.92037 0.78763 1.21675 1.06216 1.26267 1.02441 0.92864 1.25712 0.98526 0.98499 0.96075 1.70040 1.32749 1.44180 1.09761 0.85521 0.79454 0.78784 0.77995 1.19330 1.19639 1.21133 1.18528 0.78428 0.81484 0.88478 1.90773 1.54156 1.61390 1.40551 1.19648 0.94579 1.02264 0.94411 1.21642 1.00057 0.95729 0.90402 1.20453 0.92132 0.97438 0.97673 1.20068 0.95867 1.01804 0.82835 1.19265 0.83905 1.04848 0.95439 1.19881 0.97160 0.97265 0.92305 1.87713 1.28446 1.64066 1.41450 1.21913 0.77464 0.77349 0.76974 1.93277 1.93371 1.35047 1.91740 1.93258 1.62252 1.96222 1.57637 1.87579 1.36992 1.66343 1.29098 0.93925 0.87794 0.91204 0.86469 0.94364 0.88946 0.93525 0.94857 0.98357 0.92589 0.80162 0.78485 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.82 71.98 0.64 -2.84 16 2 C 0.11 3.00 2.42 44.99 0.11 3.11 16 3 C -0.15 -4.47 8.33 71.98 0.60 -3.87 16 4 N -0.58 -22.88 2.38 -805.78 -1.92 -24.80 16 5 C 0.26 13.42 4.45 85.63 0.38 13.80 16 6 C -0.53 -29.01 7.86 25.60 0.20 -28.81 16 7 H 0.05 2.93 7.51 -2.91 -0.02 2.91 16 8 C 0.01 0.60 5.46 84.65 0.46 1.06 16 9 N -0.93 -54.61 13.29 21.45 0.28 -54.32 16 10 Si 0.96 44.28 29.54 68.60 2.03 46.30 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 14 C 0.54 21.89 7.25 86.72 0.63 22.52 16 15 O -0.59 -30.02 16.57 -4.00 -0.07 -30.09 16 16 C -0.11 -3.05 5.08 -20.09 -0.10 -3.16 16 17 C -0.06 -1.12 7.29 22.51 0.16 -0.95 16 18 C -0.06 -0.85 10.04 22.31 0.22 -0.62 16 19 C 0.04 0.79 7.15 22.73 0.16 0.95 16 20 C 0.01 0.23 7.13 22.56 0.16 0.39 16 21 C -0.05 -1.35 9.71 22.60 0.22 -1.13 16 22 O -0.30 -7.68 11.37 -76.53 -0.87 -8.55 16 23 C 0.57 12.55 3.69 113.37 0.42 12.97 16 24 F -0.15 -3.34 17.57 44.97 0.79 -2.55 16 25 F -0.11 -2.29 17.56 44.97 0.79 -1.50 16 26 O -0.28 -5.77 11.33 -74.40 -0.84 -6.61 16 27 H 0.04 1.18 6.95 -2.39 -0.02 1.16 16 28 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.07 1.29 7.03 -2.39 -0.02 1.27 16 30 H 0.12 2.47 4.31 -2.39 -0.01 2.45 16 31 H 0.04 1.25 7.93 -2.39 -0.02 1.23 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.69 6.92 -2.39 -0.02 1.68 16 34 H 0.03 1.71 6.73 -2.39 -0.02 1.69 16 35 H 0.00 -0.10 7.39 -2.38 -0.02 -0.12 16 36 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 37 H 0.18 2.51 5.26 -2.91 -0.02 2.50 16 38 H 0.20 1.08 8.06 -2.91 -0.02 1.05 16 39 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -72.08 336.35 5.57 -66.51 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 1.11 Total: 2.20 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 4.26 Total: 13.40 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -1.64 Total: -79.12 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -1.78 Total: -45.24 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 1.58 Total: -4.04 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -72.08 5.57 -66.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562640646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.790 kcal (2) G-P(sol) polarization free energy of solvation -72.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds