Wall clock time and date at job start Tue Mar 31 2020 15:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81397 * 103.00128 * 2 1 4 4 C 1.53005 * 109.47334 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46933 * 305.00135 * 4 3 2 6 6 O 1.42900 * 109.46950 * 64.99913 * 4 3 2 7 7 C 1.52999 * 109.47003 * 184.99955 * 4 3 2 8 8 N 1.46505 * 109.46667 * 179.97438 * 7 4 3 9 9 C 1.40005 * 119.99628 * 179.97438 * 8 7 4 10 10 C 1.38648 * 120.10325 * 0.02562 * 9 8 7 11 11 C 1.38279 * 120.00496 * 179.72375 * 10 9 8 12 12 C 1.38266 * 120.20719 * 0.24699 * 11 10 9 13 13 C 1.38251 * 120.19745 * 0.02562 * 12 11 10 14 14 C 1.38729 * 119.99085 * 359.97438 * 13 12 11 15 15 S 1.76197 * 120.09822 * 180.02562 * 14 13 12 16 16 C 1.81401 * 103.00262 * 354.35535 * 15 14 13 17 17 H 1.08998 * 109.46518 * 49.52796 * 16 15 14 18 18 C 1.53000 * 109.46969 * 289.52712 * 16 15 14 19 19 C 1.50697 * 109.47143 * 169.52633 * 16 15 14 20 20 H 1.08003 * 120.00041 * 0.02562 * 19 16 15 21 21 C 1.37875 * 120.00067 * 179.97438 * 19 16 15 22 22 N 1.31517 * 120.00085 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 120.00225 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47127 * 60.00570 * 23 21 19 25 25 H 1.48506 * 109.47124 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47393 * 300.00449 * 23 21 19 27 27 H 1.09002 * 109.46591 * 60.00075 * 1 2 3 28 28 H 1.09000 * 109.47177 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47376 * 300.00080 * 1 2 3 30 30 H 1.09007 * 109.47224 * 59.99665 * 3 2 1 31 31 H 1.09001 * 109.47617 * 299.99851 * 3 2 1 32 32 H 0.96696 * 113.99682 * 59.99986 * 6 4 3 33 33 H 1.09003 * 109.47004 * 60.00243 * 7 4 3 34 34 H 1.08995 * 109.47083 * 299.99702 * 7 4 3 35 35 H 0.96998 * 120.00482 * 359.97438 * 8 7 4 36 36 H 1.08003 * 119.99366 * 359.97438 * 10 9 8 37 37 H 1.08004 * 119.89413 * 180.23115 * 11 10 9 38 38 H 1.08002 * 119.90193 * 179.97438 * 12 11 10 39 39 H 1.07994 * 120.00225 * 180.02562 * 13 12 11 40 40 H 1.08997 * 109.47119 * 53.73291 * 18 16 15 41 41 H 1.09003 * 109.46888 * 173.72637 * 18 16 15 42 42 H 1.08995 * 109.47279 * 293.73120 * 18 16 15 43 43 H 0.96994 * 120.00449 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 1 4.1694 1.3952 0.8427 6 8 4.2804 1.4277 -1.2201 7 6 4.0871 3.4253 0.1264 8 7 5.5428 3.5903 0.1276 9 6 6.1021 4.8694 0.2329 10 6 5.2804 5.9813 0.3367 11 6 5.8351 7.2432 0.4465 12 6 7.2087 7.4016 0.4479 13 6 8.0359 6.2993 0.3392 14 6 7.4882 5.0295 0.2287 15 16 8.5399 3.6225 0.0907 16 6 10.1930 4.3592 -0.0324 17 1 10.3248 5.0911 0.7645 18 6 10.3439 5.0497 -1.3893 19 6 11.2354 3.2790 0.1002 20 1 10.9336 2.2520 0.2437 21 6 12.5744 3.6016 0.0373 22 7 12.9420 4.8522 -0.1379 23 14 13.8666 2.2628 0.2024 24 1 13.6868 1.2649 -0.8825 25 1 15.2199 2.8659 0.1015 26 1 13.7204 1.5934 1.5199 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8031 2.2371 0.8900 31 1 1.8032 2.2372 -0.8900 32 1 3.9437 1.8669 -2.0131 33 1 3.6767 3.8159 1.0576 34 1 3.6600 3.9699 -0.7157 35 1 6.1191 2.8134 0.0554 36 1 4.2071 5.8614 0.3360 37 1 5.1934 8.1078 0.5310 38 1 7.6366 8.3896 0.5335 39 1 9.1083 6.4266 0.3411 40 1 9.5237 5.7533 -1.5321 41 1 11.2923 5.5862 -1.4205 42 1 10.3232 4.3018 -2.1819 43 1 13.8839 5.0793 -0.1818 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583688989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:25 Heat of formation + Delta-G solvation = -32.792385 kcal Electronic energy + Delta-G solvation = -22661.090225 eV Core-core repulsion = 19344.197586 eV Total energy + Delta-G solvation = -3316.892639 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.18545 -37.98992 -34.92846 -34.03468 -31.79593 -31.01255 -29.92336 -29.42082 -28.85600 -25.81932 -25.28420 -22.90401 -21.96335 -21.41154 -20.87752 -17.71606 -17.37587 -16.56079 -16.34343 -16.09921 -15.86058 -15.51998 -14.90171 -14.62186 -14.31060 -14.21702 -13.96567 -13.70234 -13.55182 -13.49274 -13.23127 -12.79731 -12.55958 -12.47078 -12.26543 -11.85819 -11.61481 -11.50186 -11.09258 -10.96792 -10.92297 -10.55234 -10.41978 -10.37554 -10.30121 -9.92416 -9.88062 -9.36947 -9.00989 -8.82821 -8.45817 -8.00829 -7.46436 -6.27695 -6.17487 -4.25737 1.22693 1.76052 1.99007 2.20023 2.62804 3.27421 3.30804 3.35259 3.46016 3.78288 4.08003 4.23424 4.33102 4.36515 4.55012 4.60129 4.70953 4.74839 4.95431 5.06164 5.14828 5.21768 5.28248 5.33528 5.41762 5.65396 5.67795 5.89509 6.06264 6.31889 6.53936 6.64646 6.74520 6.80920 6.84309 7.00217 7.18640 7.35705 7.39334 7.59951 7.64916 7.81497 7.98023 8.05297 8.72861 9.37941 10.88892 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013299 B = 0.002896 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.933820 B = 9667.718106 C =11517.087412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.232 6.232 3 C -0.122 4.122 4 C 0.114 3.886 5 H 0.114 0.886 6 O -0.540 6.540 7 C 0.104 3.896 8 N -0.739 5.739 9 C 0.221 3.779 10 C -0.191 4.191 11 C -0.096 4.096 12 C -0.160 4.160 13 C -0.089 4.089 14 C -0.130 4.130 15 S -0.178 6.178 16 C 0.101 3.899 17 H 0.050 0.950 18 C -0.138 4.138 19 C -0.510 4.510 20 H 0.066 0.934 21 C 0.071 3.929 22 N -0.887 5.887 23 Si 0.906 3.094 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.376 0.624 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.410 0.590 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.133 0.867 40 H 0.019 0.981 41 H 0.089 0.911 42 H 0.040 0.960 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.360 -0.716 -0.147 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S -0.006 6.006 3 C -0.272 4.272 4 C 0.053 3.947 5 H 0.132 0.868 6 O -0.345 6.345 7 C -0.023 4.023 8 N -0.373 5.373 9 C 0.114 3.886 10 C -0.216 4.216 11 C -0.118 4.118 12 C -0.181 4.181 13 C -0.114 4.114 14 C -0.247 4.247 15 S 0.068 5.932 16 C -0.026 4.026 17 H 0.067 0.933 18 C -0.198 4.198 19 C -0.550 4.550 20 H 0.084 0.916 21 C -0.133 4.133 22 N -0.525 5.525 23 Si 0.733 3.267 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.223 0.777 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.248 0.752 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.151 0.849 40 H 0.038 0.962 41 H 0.108 0.892 42 H 0.059 0.941 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.606 -3.154 0.228 22.826 hybrid contribution -0.077 1.963 -0.251 1.980 sum -22.682 -1.191 -0.023 22.714 Atomic orbital electron populations 1.23434 0.95114 1.06594 1.04769 1.87318 1.05949 1.09362 1.97971 1.24157 1.00796 0.96350 1.05849 1.21817 0.89538 0.93668 0.89680 0.86812 1.86715 1.69813 1.63034 1.14952 1.21849 0.83271 0.95541 1.01643 1.44520 1.04507 1.05894 1.82357 1.17284 0.90099 0.85293 0.95963 1.20375 0.98115 0.91703 1.11417 1.20731 0.94865 0.96035 1.00125 1.20804 0.93394 0.98112 1.05817 1.21255 1.00601 0.91074 0.98445 1.21461 0.94502 0.98535 1.10161 1.85007 1.06196 1.11435 1.90575 1.21034 0.85974 0.97954 0.97686 0.93257 1.22079 1.01434 0.99216 0.97044 1.20606 0.89510 0.93333 1.51522 0.91597 1.24884 0.98134 0.95910 0.94416 1.69869 1.17002 1.16895 1.48699 0.86425 0.79904 0.81425 0.78985 1.19950 1.21069 1.19958 0.90572 0.88001 0.90603 0.88892 0.89516 0.77683 0.91615 0.92203 0.75177 0.86837 0.86861 0.86725 0.84924 0.96204 0.89246 0.94070 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 10.76 101.05 1.09 0.35 16 2 S -0.23 -2.08 22.16 -107.50 -2.38 -4.47 16 3 C -0.12 -0.86 5.60 37.16 0.21 -0.65 16 4 C 0.11 1.05 3.05 -26.73 -0.08 0.97 16 5 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 6 O -0.54 -5.89 12.84 -35.23 -0.45 -6.34 16 7 C 0.10 1.02 4.58 -4.04 -0.02 1.00 16 8 N -0.74 -10.60 5.58 -58.44 -0.33 -10.93 16 9 C 0.22 3.68 6.66 -83.49 -0.56 3.13 16 10 C -0.19 -2.75 9.31 -39.41 -0.37 -3.12 16 11 C -0.10 -1.36 10.04 -39.56 -0.40 -1.76 16 12 C -0.16 -2.56 10.04 -39.57 -0.40 -2.96 16 13 C -0.09 -1.69 8.06 -39.40 -0.32 -2.01 16 14 C -0.13 -2.54 5.99 -38.92 -0.23 -2.77 16 15 S -0.18 -3.93 19.75 -107.50 -2.12 -6.05 16 16 C 0.10 2.53 1.97 -27.88 -0.06 2.48 16 17 H 0.05 1.32 6.83 -51.92 -0.35 0.96 16 18 C -0.14 -3.32 8.38 37.16 0.31 -3.01 16 19 C -0.51 -13.94 8.58 -34.44 -0.30 -14.23 16 20 H 0.07 1.82 7.71 -52.48 -0.40 1.41 16 21 C 0.07 1.91 5.30 -17.82 -0.09 1.82 16 22 N -0.89 -24.48 11.39 55.43 0.63 -23.85 16 23 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 27 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.10 0.51 8.14 -51.92 -0.42 0.08 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.09 0.49 8.14 -51.92 -0.42 0.06 16 32 H 0.38 2.90 9.04 45.56 0.41 3.31 16 33 H 0.07 0.58 7.95 -51.93 -0.41 0.17 16 34 H 0.06 0.52 7.95 -51.93 -0.41 0.11 16 35 H 0.41 6.58 6.90 -40.82 -0.28 6.30 16 36 H 0.11 1.31 6.74 -52.48 -0.35 0.96 16 37 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.13 2.74 4.99 -52.49 -0.26 2.48 16 40 H 0.02 0.43 6.17 -51.93 -0.32 0.11 16 41 H 0.09 2.30 6.26 -51.93 -0.33 1.98 16 42 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -29.89 372.85 -10.92 -40.81 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.65 Total: 9.95 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -1.21 Total: -20.77 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.31 Total: -34.78 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.45 Total: -6.34 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -6.01 SS G_CDS: -4.50 Total: -10.51 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.89 -10.92 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583688989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.017 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds