Wall clock time and date at job start Tue Mar 31 2020 15:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81397 * 103.00128 * 2 1 4 4 C 1.53005 * 109.47334 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46933 * 305.00135 * 4 3 2 6 6 O 1.42900 * 109.46950 * 64.99913 * 4 3 2 7 7 C 1.52999 * 109.47003 * 184.99955 * 4 3 2 8 8 N 1.46505 * 109.46667 * 179.97438 * 7 4 3 9 9 C 1.40005 * 119.99628 * 179.97438 * 8 7 4 10 10 C 1.38648 * 120.10325 * 0.02562 * 9 8 7 11 11 C 1.38279 * 120.00496 * 179.72375 * 10 9 8 12 12 C 1.38266 * 120.20719 * 0.24699 * 11 10 9 13 13 C 1.38251 * 120.19745 * 0.02562 * 12 11 10 14 14 C 1.38729 * 119.99085 * 359.97438 * 13 12 11 15 15 S 1.76197 * 120.09822 * 180.02562 * 14 13 12 16 16 C 1.81401 * 103.00262 * 354.35535 * 15 14 13 17 17 H 1.08998 * 109.46518 * 49.52796 * 16 15 14 18 18 C 1.53000 * 109.46969 * 289.52712 * 16 15 14 19 19 C 1.50697 * 109.47143 * 169.52633 * 16 15 14 20 20 H 1.08003 * 120.00041 * 0.02562 * 19 16 15 21 21 C 1.37875 * 120.00067 * 179.97438 * 19 16 15 22 22 N 1.31517 * 120.00085 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 120.00225 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47127 * 60.00570 * 23 21 19 25 25 H 1.48506 * 109.47124 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47393 * 300.00449 * 23 21 19 27 27 H 1.09002 * 109.46591 * 60.00075 * 1 2 3 28 28 H 1.09000 * 109.47177 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47376 * 300.00080 * 1 2 3 30 30 H 1.09007 * 109.47224 * 59.99665 * 3 2 1 31 31 H 1.09001 * 109.47617 * 299.99851 * 3 2 1 32 32 H 0.96696 * 113.99682 * 59.99986 * 6 4 3 33 33 H 1.09003 * 109.47004 * 60.00243 * 7 4 3 34 34 H 1.08995 * 109.47083 * 299.99702 * 7 4 3 35 35 H 0.96998 * 120.00482 * 359.97438 * 8 7 4 36 36 H 1.08003 * 119.99366 * 359.97438 * 10 9 8 37 37 H 1.08004 * 119.89413 * 180.23115 * 11 10 9 38 38 H 1.08002 * 119.90193 * 179.97438 * 12 11 10 39 39 H 1.07994 * 120.00225 * 180.02562 * 13 12 11 40 40 H 1.08997 * 109.47119 * 53.73291 * 18 16 15 41 41 H 1.09003 * 109.46888 * 173.72637 * 18 16 15 42 42 H 1.08995 * 109.47279 * 293.73120 * 18 16 15 43 43 H 0.96994 * 120.00449 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 1 4.1694 1.3952 0.8427 6 8 4.2804 1.4277 -1.2201 7 6 4.0871 3.4253 0.1264 8 7 5.5428 3.5903 0.1276 9 6 6.1021 4.8694 0.2329 10 6 5.2804 5.9813 0.3367 11 6 5.8351 7.2432 0.4465 12 6 7.2087 7.4016 0.4479 13 6 8.0359 6.2993 0.3392 14 6 7.4882 5.0295 0.2287 15 16 8.5399 3.6225 0.0907 16 6 10.1930 4.3592 -0.0324 17 1 10.3248 5.0911 0.7645 18 6 10.3439 5.0497 -1.3893 19 6 11.2354 3.2790 0.1002 20 1 10.9336 2.2520 0.2437 21 6 12.5744 3.6016 0.0373 22 7 12.9420 4.8522 -0.1379 23 14 13.8666 2.2628 0.2024 24 1 13.6868 1.2649 -0.8825 25 1 15.2199 2.8659 0.1015 26 1 13.7204 1.5934 1.5199 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8031 2.2371 0.8900 31 1 1.8032 2.2372 -0.8900 32 1 3.9437 1.8669 -2.0131 33 1 3.6767 3.8159 1.0576 34 1 3.6600 3.9699 -0.7157 35 1 6.1191 2.8134 0.0554 36 1 4.2071 5.8614 0.3360 37 1 5.1934 8.1078 0.5310 38 1 7.6366 8.3896 0.5335 39 1 9.1083 6.4266 0.3411 40 1 9.5237 5.7533 -1.5321 41 1 11.2923 5.5862 -1.4205 42 1 10.3232 4.3018 -2.1819 43 1 13.8839 5.0793 -0.1818 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583688989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:24 Heat of formation + Delta-G solvation = -51.160573 kcal Electronic energy + Delta-G solvation = -22661.886729 eV Core-core repulsion = 19344.197586 eV Total energy + Delta-G solvation = -3317.689143 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.31892 -38.88991 -36.31035 -35.74972 -32.75349 -32.58918 -31.47877 -30.15366 -29.62746 -27.39689 -26.68450 -23.98503 -23.51893 -22.70443 -22.17527 -19.17177 -18.22559 -18.06187 -17.50322 -17.23847 -17.06582 -16.60862 -16.31102 -15.76033 -15.48877 -15.11796 -14.96684 -14.84230 -14.70501 -14.41038 -14.37502 -14.20472 -13.76425 -13.60596 -13.23453 -13.08570 -13.05528 -12.89746 -12.85764 -12.49992 -12.39481 -12.26013 -12.08114 -11.56211 -11.34747 -11.16393 -10.99405 -10.87860 -10.76621 -10.50169 -10.35468 -8.76465 -8.67061 -8.24858 -7.80352 -6.40968 0.46746 0.67241 0.73333 1.01627 1.40425 1.41994 1.50756 1.68710 1.97613 2.37212 2.51340 2.96487 3.04575 3.43838 3.59119 3.89471 3.94912 4.02248 4.27367 4.32323 4.35076 4.35928 4.52121 4.53232 4.59335 4.61267 4.62964 4.82178 4.82870 4.84941 4.89601 4.96116 5.05801 5.30842 5.33262 5.52066 5.57320 5.72070 5.75782 5.99056 6.01266 6.47184 6.60909 6.68278 6.79774 7.25953 8.81146 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013299 B = 0.002896 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.933820 B = 9667.718106 C =11517.087412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.309 6.309 3 C -0.101 4.101 4 C 0.119 3.881 5 H 0.092 0.908 6 O -0.565 6.565 7 C 0.104 3.896 8 N -0.743 5.743 9 C 0.220 3.780 10 C -0.185 4.185 11 C -0.077 4.077 12 C -0.170 4.170 13 C -0.108 4.108 14 C -0.164 4.164 15 S -0.194 6.194 16 C 0.102 3.898 17 H 0.021 0.979 18 C -0.119 4.119 19 C -0.535 4.535 20 H 0.056 0.944 21 C 0.026 3.974 22 N -0.909 5.909 23 Si 0.968 3.032 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.271 1.271 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.388 0.612 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.398 0.602 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.033 0.967 41 H 0.069 0.931 42 H 0.031 0.969 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.656 0.291 -0.141 26.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.084 6.084 3 C -0.250 4.250 4 C 0.058 3.942 5 H 0.110 0.890 6 O -0.372 6.372 7 C -0.022 4.022 8 N -0.374 5.374 9 C 0.111 3.889 10 C -0.209 4.209 11 C -0.098 4.098 12 C -0.191 4.191 13 C -0.133 4.133 14 C -0.281 4.281 15 S 0.051 5.949 16 C -0.026 4.026 17 H 0.039 0.961 18 C -0.179 4.179 19 C -0.574 4.574 20 H 0.074 0.926 21 C -0.175 4.175 22 N -0.547 5.547 23 Si 0.792 3.208 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.196 1.196 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.237 0.763 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.234 0.766 36 H 0.171 0.829 37 H 0.174 0.826 38 H 0.151 0.849 39 H 0.120 0.880 40 H 0.052 0.948 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -25.952 -2.129 0.231 26.040 hybrid contribution 0.752 1.717 -0.230 1.889 sum -25.201 -0.411 0.001 25.204 Atomic orbital electron populations 1.23438 0.91396 1.07312 1.05964 1.87612 1.10188 1.12408 1.98193 1.24025 0.98846 0.94360 1.07723 1.21712 0.90994 0.92979 0.88484 0.89009 1.86689 1.70619 1.63832 1.16047 1.22099 0.80510 0.96130 1.03446 1.44746 1.06405 1.04671 1.81566 1.17520 0.89104 0.87019 0.95212 1.20829 0.99791 0.90701 1.09577 1.21235 0.94247 0.97519 0.96834 1.21055 0.94393 0.97830 1.05872 1.21156 0.99680 0.92320 1.00155 1.21426 0.95373 0.97145 1.14112 1.84735 1.04872 1.13468 1.91843 1.20733 0.88029 0.96963 0.96883 0.96143 1.21848 1.00840 0.98792 0.96378 1.20876 0.90817 0.93424 1.52264 0.92585 1.25691 0.99948 0.98070 0.93833 1.69979 1.17496 1.18402 1.48837 0.85463 0.77566 0.78813 0.78985 1.19509 1.20043 1.19593 0.89329 0.87598 0.89350 0.87039 0.87436 0.76279 0.89717 0.89896 0.76617 0.82858 0.82568 0.84916 0.87955 0.94774 0.91276 0.94955 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.76 113.37 1.22 0.21 16 2 S -0.31 -5.23 22.16 -56.49 -1.25 -6.48 16 3 C -0.10 -1.13 5.60 71.98 0.40 -0.73 16 4 C 0.12 1.99 3.05 30.60 0.09 2.08 16 5 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 6 O -0.56 -11.89 12.84 -148.98 -1.91 -13.80 16 7 C 0.10 1.69 4.58 86.38 0.40 2.09 16 8 N -0.74 -20.23 5.58 -338.81 -1.89 -22.12 16 9 C 0.22 6.96 6.66 38.25 0.25 7.21 16 10 C -0.18 -4.51 9.31 22.38 0.21 -4.30 16 11 C -0.08 -1.86 10.04 22.29 0.22 -1.64 16 12 C -0.17 -5.16 10.04 22.28 0.22 -4.93 16 13 C -0.11 -4.23 8.06 22.39 0.18 -4.05 16 14 C -0.16 -6.49 5.99 22.70 0.14 -6.36 16 15 S -0.19 -8.93 19.75 -56.49 -1.12 -10.05 16 16 C 0.10 5.41 1.97 29.85 0.06 5.47 16 17 H 0.02 1.19 6.83 -2.39 -0.02 1.17 16 18 C -0.12 -6.03 8.38 71.98 0.60 -5.43 16 19 C -0.53 -30.55 8.58 25.60 0.22 -30.33 16 20 H 0.06 3.23 7.71 -2.91 -0.02 3.21 16 21 C 0.03 1.47 5.30 84.65 0.45 1.92 16 22 N -0.91 -51.86 11.39 21.45 0.24 -51.61 16 23 Si 0.97 43.98 29.54 68.60 2.03 46.00 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 27 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.11 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.39 5.45 9.04 -74.06 -0.67 4.78 16 33 H 0.08 1.12 7.95 -2.39 -0.02 1.10 16 34 H 0.08 1.03 7.95 -2.39 -0.02 1.01 16 35 H 0.40 12.84 6.90 -92.71 -0.64 12.20 16 36 H 0.15 2.54 6.74 -2.91 -0.02 2.52 16 37 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.10 4.53 4.99 -2.91 -0.01 4.52 16 40 H 0.03 1.57 6.17 -2.39 -0.01 1.56 16 41 H 0.07 3.75 6.26 -2.39 -0.01 3.74 16 42 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -68.88 372.85 0.49 -68.39 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.28 Total: 28.45 kcal Atomic # 6 Polarization: -43.45 SS G_CDS: 4.67 Total: -38.79 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -1.64 Total: -73.73 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -1.91 Total: -13.80 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -14.16 SS G_CDS: -2.37 Total: -16.53 kcal Total: -68.88 0.49 -68.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583688989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.233 kcal (2) G-P(sol) polarization free energy of solvation -68.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds