Wall clock time and date at job start Tue Mar 31 2020 15:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81400 * 103.00183 * 2 1 4 4 C 1.52995 * 109.47355 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47460 * 59.99622 * 4 3 2 6 6 O 1.42903 * 109.46900 * 299.99811 * 4 3 2 7 7 C 1.52996 * 109.47402 * 179.97438 * 4 3 2 8 8 N 1.46500 * 109.47396 * 184.99907 * 7 4 3 9 9 C 1.40009 * 120.00073 * 179.97438 * 8 7 4 10 10 C 1.38637 * 120.09494 * 0.02562 * 9 8 7 11 11 C 1.38295 * 120.00320 * 179.97438 * 10 9 8 12 12 C 1.38267 * 120.19945 * 0.04676 * 11 10 9 13 13 C 1.38244 * 120.20154 * 359.94678 * 12 11 10 14 14 C 1.38737 * 119.99207 * 359.77793 * 13 12 11 15 15 S 1.76194 * 120.10293 * 180.27340 * 14 13 12 16 16 C 1.81404 * 103.00106 * 354.27906 * 15 14 13 17 17 H 1.09003 * 109.47027 * 52.01481 * 16 15 14 18 18 C 1.52997 * 109.47356 * 172.01657 * 16 15 14 19 19 C 1.50697 * 109.47113 * 292.01731 * 16 15 14 20 20 H 1.07997 * 120.00451 * 359.97438 * 19 16 15 21 21 C 1.37886 * 119.99717 * 179.97438 * 19 16 15 22 22 N 1.31506 * 119.99944 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 119.99657 * 180.02562 * 21 19 16 24 24 H 1.48495 * 109.47343 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47031 * 120.00170 * 23 21 19 26 26 H 1.48499 * 109.46980 * 239.99845 * 23 21 19 27 27 H 1.08999 * 109.46851 * 60.00516 * 1 2 3 28 28 H 1.09003 * 109.46781 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47352 * 300.00251 * 1 2 3 30 30 H 1.09003 * 109.46892 * 300.00072 * 3 2 1 31 31 H 1.08997 * 109.47145 * 59.99454 * 3 2 1 32 32 H 0.96704 * 113.99977 * 299.99881 * 6 4 3 33 33 H 1.09004 * 109.46880 * 304.99756 * 7 4 3 34 34 H 1.09002 * 109.47249 * 64.99440 * 7 4 3 35 35 H 0.96998 * 119.99589 * 359.97438 * 8 7 4 36 36 H 1.07997 * 120.00547 * 359.97407 * 10 9 8 37 37 H 1.08003 * 119.89919 * 180.02562 * 11 10 9 38 38 H 1.08005 * 119.89779 * 179.97438 * 12 11 10 39 39 H 1.07996 * 120.00701 * 180.02562 * 13 12 11 40 40 H 1.09006 * 109.47237 * 305.34213 * 18 16 15 41 41 H 1.08998 * 109.47191 * 65.33864 * 18 16 15 42 42 H 1.08999 * 109.47304 * 185.34355 * 18 16 15 43 43 H 0.97003 * 119.99628 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.1609 1.4704 -0.8908 6 8 4.2920 1.3242 1.1659 7 6 4.0866 3.4307 -0.0013 8 7 5.5371 3.5969 -0.1223 9 6 6.0950 4.8808 -0.1457 10 6 5.2767 5.9962 -0.0541 11 6 5.8299 7.2635 -0.0770 12 6 7.1985 7.4230 -0.1920 13 6 8.0223 6.3166 -0.2838 14 6 7.4766 5.0414 -0.2560 15 16 8.5244 3.6291 -0.3655 16 6 10.1582 4.3559 -0.6706 17 1 10.3637 5.1169 0.0822 18 6 11.2253 3.2621 -0.5947 19 6 10.1804 4.9851 -2.0398 20 1 9.2999 4.9508 -2.6642 21 6 11.3250 5.6045 -2.4954 22 7 12.3970 5.6467 -1.7349 23 14 11.3522 6.3850 -4.1923 24 1 10.0296 6.2027 -4.8423 25 1 11.6464 7.8350 -4.0655 26 1 12.4026 5.7372 -5.0183 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8032 2.2371 -0.8900 31 1 1.8032 2.2371 0.8899 32 1 3.9634 1.6929 1.9972 33 1 3.5937 3.9170 -0.8432 34 1 3.7454 3.8828 0.9300 35 1 6.1109 2.8175 -0.1861 36 1 4.2072 5.8755 0.0351 37 1 5.1909 8.1312 -0.0051 38 1 7.6253 8.4150 -0.2098 39 1 9.0909 6.4448 -0.3732 40 1 11.1466 2.7435 0.3609 41 1 11.0754 2.5512 -1.4072 42 1 12.2140 3.7122 -0.6834 43 1 13.2023 6.0822 -2.0556 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583688990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:28 Heat of formation + Delta-G solvation = -33.044877 kcal Electronic energy + Delta-G solvation = -22824.267366 eV Core-core repulsion = 19507.363779 eV Total energy + Delta-G solvation = -3316.903588 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.07727 -37.91707 -34.84838 -34.02803 -31.74899 -30.57521 -30.14733 -29.39735 -28.76525 -25.79520 -25.25937 -22.81892 -22.02204 -21.39484 -20.59458 -17.41901 -17.23799 -16.49235 -16.41364 -16.14494 -15.83553 -15.46111 -14.86733 -14.59516 -14.25877 -14.17529 -13.92569 -13.64586 -13.42586 -13.37117 -13.16528 -12.87256 -12.73896 -12.42380 -12.14500 -11.68414 -11.54253 -11.48063 -11.09849 -10.96281 -10.68859 -10.45088 -10.41720 -10.32789 -10.27576 -9.96252 -9.76284 -9.32076 -8.91408 -8.87110 -8.44572 -7.99330 -7.34921 -6.33067 -6.03505 -4.23323 1.24007 1.92244 2.14658 2.21695 2.74513 3.23827 3.32324 3.37840 3.52455 3.79101 4.09797 4.35066 4.39457 4.39984 4.56057 4.64416 4.72177 4.76145 4.99422 5.09158 5.16081 5.29368 5.32714 5.41232 5.57303 5.70194 5.80623 6.08061 6.21075 6.52914 6.63609 6.69816 6.77378 6.86007 6.92118 7.19501 7.33906 7.36500 7.41097 7.62411 7.71201 7.83859 8.05290 8.05870 8.78322 9.41158 10.89575 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.002828 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.441193 B = 9897.586008 C =10550.064098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.230 6.230 3 C -0.123 4.123 4 C 0.114 3.886 5 H 0.114 0.886 6 O -0.541 6.541 7 C 0.106 3.894 8 N -0.741 5.741 9 C 0.219 3.781 10 C -0.196 4.196 11 C -0.095 4.095 12 C -0.164 4.164 13 C -0.067 4.067 14 C -0.117 4.117 15 S -0.200 6.200 16 C 0.097 3.903 17 H 0.050 0.950 18 C -0.124 4.124 19 C -0.514 4.514 20 H 0.067 0.933 21 C 0.069 3.931 22 N -0.888 5.888 23 Si 0.896 3.104 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.375 0.625 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.408 0.592 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.145 0.855 40 H 0.020 0.980 41 H 0.039 0.961 42 H 0.097 0.903 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.018 -4.089 5.206 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S -0.004 6.004 3 C -0.272 4.272 4 C 0.053 3.947 5 H 0.132 0.868 6 O -0.346 6.346 7 C -0.022 4.022 8 N -0.375 5.375 9 C 0.112 3.888 10 C -0.221 4.221 11 C -0.117 4.117 12 C -0.185 4.185 13 C -0.092 4.092 14 C -0.234 4.234 15 S 0.045 5.955 16 C -0.030 4.030 17 H 0.067 0.933 18 C -0.184 4.184 19 C -0.553 4.553 20 H 0.085 0.915 21 C -0.135 4.135 22 N -0.526 5.526 23 Si 0.724 3.276 24 H -0.195 1.195 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.223 0.777 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.246 0.754 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.163 0.837 40 H 0.039 0.961 41 H 0.058 0.942 42 H 0.115 0.885 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.236 -6.530 4.879 21.816 hybrid contribution -0.709 3.008 -0.806 3.194 sum -20.945 -3.522 4.073 21.626 Atomic orbital electron populations 1.23439 0.95217 1.06567 1.04770 1.87309 1.05796 1.09340 1.97976 1.24164 1.00831 0.96343 1.05884 1.21814 0.89363 0.92540 0.90965 0.86822 1.86707 1.69761 1.62769 1.15349 1.21833 0.83540 0.95351 1.01450 1.44490 1.04946 1.05299 1.82729 1.17302 0.90185 0.85091 0.96254 1.20313 0.98035 0.91573 1.12165 1.20735 0.94970 0.95896 1.00056 1.20834 0.93401 0.98232 1.06082 1.21438 1.01517 0.90521 0.95716 1.21111 0.93771 0.97814 1.10677 1.84475 1.09118 1.12751 1.89180 1.21058 0.85294 0.96295 1.00352 0.93259 1.21630 1.01945 0.97247 0.97587 1.21302 0.98835 1.35543 0.99638 0.91511 1.24963 0.95277 0.95709 0.97564 1.69878 1.02556 1.43502 1.36655 0.86443 0.78294 0.78926 0.83980 1.19538 1.20860 1.20868 0.90606 0.88017 0.90593 0.88864 0.89558 0.77748 0.91723 0.92230 0.75432 0.87037 0.87061 0.86845 0.83722 0.96126 0.94226 0.88457 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.76 10.76 101.05 1.09 0.33 16 2 S -0.23 -2.09 22.02 -107.50 -2.37 -4.45 16 3 C -0.12 -0.89 5.64 37.15 0.21 -0.68 16 4 C 0.11 1.08 3.05 -26.74 -0.08 1.00 16 5 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 6 O -0.54 -5.83 12.88 -35.23 -0.45 -6.28 16 7 C 0.11 1.09 4.56 -4.04 -0.02 1.07 16 8 N -0.74 -11.03 5.63 -58.45 -0.33 -11.36 16 9 C 0.22 3.84 6.66 -83.50 -0.56 3.28 16 10 C -0.20 -3.03 9.31 -39.41 -0.37 -3.40 16 11 C -0.09 -1.47 10.04 -39.55 -0.40 -1.87 16 12 C -0.16 -2.90 10.04 -39.57 -0.40 -3.30 16 13 C -0.07 -1.40 8.80 -39.39 -0.35 -1.75 16 14 C -0.12 -2.40 6.05 -38.92 -0.24 -2.64 16 15 S -0.20 -4.35 19.77 -107.50 -2.13 -6.48 16 16 C 0.10 2.39 2.01 -27.89 -0.06 2.34 16 17 H 0.05 1.29 6.99 -51.92 -0.36 0.93 16 18 C -0.12 -2.95 8.90 37.16 0.33 -2.62 16 19 C -0.51 -13.57 6.92 -34.44 -0.24 -13.81 16 20 H 0.07 1.84 7.71 -52.49 -0.40 1.44 16 21 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 22 N -0.89 -24.12 11.38 55.43 0.63 -23.49 16 23 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 27 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.10 0.52 8.14 -51.92 -0.42 0.09 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.38 2.82 9.05 45.56 0.41 3.23 16 33 H 0.06 0.62 7.95 -51.93 -0.41 0.21 16 34 H 0.06 0.55 7.95 -51.93 -0.41 0.13 16 35 H 0.41 6.64 7.02 -40.82 -0.29 6.36 16 36 H 0.11 1.40 6.74 -52.49 -0.35 1.04 16 37 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 39 H 0.15 3.35 5.09 -52.49 -0.27 3.08 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.10 2.47 6.23 -51.93 -0.32 2.15 16 43 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -29.21 374.86 -10.95 -40.16 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -5.78 Total: 10.66 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -1.16 Total: -20.34 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.30 Total: -34.84 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.45 Total: -6.28 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -6.44 SS G_CDS: -4.49 Total: -10.93 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.21 -10.95 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583688990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.119 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds