Wall clock time and date at job start Tue Mar 31 2020 15:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81400 * 103.00183 * 2 1 4 4 C 1.52995 * 109.47355 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47460 * 59.99622 * 4 3 2 6 6 O 1.42903 * 109.46900 * 299.99811 * 4 3 2 7 7 C 1.52996 * 109.47402 * 179.97438 * 4 3 2 8 8 N 1.46500 * 109.47396 * 184.99907 * 7 4 3 9 9 C 1.40009 * 120.00073 * 179.97438 * 8 7 4 10 10 C 1.38637 * 120.09494 * 0.02562 * 9 8 7 11 11 C 1.38295 * 120.00320 * 179.97438 * 10 9 8 12 12 C 1.38267 * 120.19945 * 0.04676 * 11 10 9 13 13 C 1.38244 * 120.20154 * 359.94678 * 12 11 10 14 14 C 1.38737 * 119.99207 * 359.77793 * 13 12 11 15 15 S 1.76194 * 120.10293 * 180.27340 * 14 13 12 16 16 C 1.81404 * 103.00106 * 354.27906 * 15 14 13 17 17 H 1.09003 * 109.47027 * 52.01481 * 16 15 14 18 18 C 1.52997 * 109.47356 * 172.01657 * 16 15 14 19 19 C 1.50697 * 109.47113 * 292.01731 * 16 15 14 20 20 H 1.07997 * 120.00451 * 359.97438 * 19 16 15 21 21 C 1.37886 * 119.99717 * 179.97438 * 19 16 15 22 22 N 1.31506 * 119.99944 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 119.99657 * 180.02562 * 21 19 16 24 24 H 1.48495 * 109.47343 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47031 * 120.00170 * 23 21 19 26 26 H 1.48499 * 109.46980 * 239.99845 * 23 21 19 27 27 H 1.08999 * 109.46851 * 60.00516 * 1 2 3 28 28 H 1.09003 * 109.46781 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47352 * 300.00251 * 1 2 3 30 30 H 1.09003 * 109.46892 * 300.00072 * 3 2 1 31 31 H 1.08997 * 109.47145 * 59.99454 * 3 2 1 32 32 H 0.96704 * 113.99977 * 299.99881 * 6 4 3 33 33 H 1.09004 * 109.46880 * 304.99756 * 7 4 3 34 34 H 1.09002 * 109.47249 * 64.99440 * 7 4 3 35 35 H 0.96998 * 119.99589 * 359.97438 * 8 7 4 36 36 H 1.07997 * 120.00547 * 359.97407 * 10 9 8 37 37 H 1.08003 * 119.89919 * 180.02562 * 11 10 9 38 38 H 1.08005 * 119.89779 * 179.97438 * 12 11 10 39 39 H 1.07996 * 120.00701 * 180.02562 * 13 12 11 40 40 H 1.09006 * 109.47237 * 305.34213 * 18 16 15 41 41 H 1.08998 * 109.47191 * 65.33864 * 18 16 15 42 42 H 1.08999 * 109.47304 * 185.34355 * 18 16 15 43 43 H 0.97003 * 119.99628 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.1609 1.4704 -0.8908 6 8 4.2920 1.3242 1.1659 7 6 4.0866 3.4307 -0.0013 8 7 5.5371 3.5969 -0.1223 9 6 6.0950 4.8808 -0.1457 10 6 5.2767 5.9962 -0.0541 11 6 5.8299 7.2635 -0.0770 12 6 7.1985 7.4230 -0.1920 13 6 8.0223 6.3166 -0.2838 14 6 7.4766 5.0414 -0.2560 15 16 8.5244 3.6291 -0.3655 16 6 10.1582 4.3559 -0.6706 17 1 10.3637 5.1169 0.0822 18 6 11.2253 3.2621 -0.5947 19 6 10.1804 4.9851 -2.0398 20 1 9.2999 4.9508 -2.6642 21 6 11.3250 5.6045 -2.4954 22 7 12.3970 5.6467 -1.7349 23 14 11.3522 6.3850 -4.1923 24 1 10.0296 6.2027 -4.8423 25 1 11.6464 7.8350 -4.0655 26 1 12.4026 5.7372 -5.0183 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8032 2.2371 -0.8900 31 1 1.8032 2.2371 0.8899 32 1 3.9634 1.6929 1.9972 33 1 3.5937 3.9170 -0.8432 34 1 3.7454 3.8828 0.9300 35 1 6.1109 2.8175 -0.1861 36 1 4.2072 5.8755 0.0351 37 1 5.1909 8.1312 -0.0051 38 1 7.6253 8.4150 -0.2098 39 1 9.0909 6.4448 -0.3732 40 1 11.1466 2.7435 0.3609 41 1 11.0754 2.5512 -1.4072 42 1 12.2140 3.7122 -0.6834 43 1 13.2023 6.0822 -2.0556 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583688990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:27 Heat of formation + Delta-G solvation = -50.603715 kcal Electronic energy + Delta-G solvation = -22825.028775 eV Core-core repulsion = 19507.363779 eV Total energy + Delta-G solvation = -3317.664996 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.26665 -38.85734 -36.27079 -35.72893 -32.58797 -32.39680 -31.67517 -30.12681 -29.60846 -27.38770 -26.66110 -23.94168 -23.66300 -22.56895 -22.02320 -18.68625 -18.41489 -18.18953 -17.46324 -17.21049 -17.06786 -16.59079 -16.28467 -15.72366 -15.45337 -15.08249 -14.95606 -14.84071 -14.77546 -14.42534 -14.37040 -14.29626 -13.60822 -13.44385 -13.34224 -13.14964 -12.97968 -12.88433 -12.73681 -12.41282 -12.33664 -12.26165 -12.07340 -11.55436 -11.28102 -11.16591 -10.96055 -10.86750 -10.81517 -10.50289 -10.28982 -8.72682 -8.65860 -8.22452 -7.72143 -6.33400 0.53825 0.67460 0.78378 1.12033 1.36605 1.39301 1.50630 1.69307 1.95691 2.39047 2.53518 3.02177 3.09376 3.44282 3.60182 3.91811 3.93263 4.10700 4.31972 4.32952 4.35389 4.36301 4.53626 4.55175 4.61549 4.62944 4.73159 4.84043 4.87165 4.89936 4.90196 4.96960 5.17470 5.34115 5.37349 5.57575 5.60413 5.76963 5.82368 6.04011 6.05383 6.50171 6.68327 6.71027 6.81194 7.32613 8.85091 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.002828 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.441193 B = 9897.586008 C =10550.064098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.304 6.304 3 C -0.103 4.103 4 C 0.120 3.880 5 H 0.092 0.908 6 O -0.563 6.563 7 C 0.104 3.896 8 N -0.743 5.743 9 C 0.219 3.781 10 C -0.189 4.189 11 C -0.078 4.078 12 C -0.178 4.178 13 C -0.091 4.091 14 C -0.154 4.154 15 S -0.199 6.199 16 C 0.095 3.905 17 H 0.022 0.978 18 C -0.114 4.114 19 C -0.517 4.517 20 H 0.049 0.951 21 C 0.027 3.973 22 N -0.911 5.911 23 Si 0.954 3.046 24 H -0.274 1.274 25 H -0.276 1.276 26 H -0.277 1.277 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.388 0.612 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.398 0.602 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.078 0.922 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.718 -2.983 5.181 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.078 6.078 3 C -0.251 4.251 4 C 0.060 3.940 5 H 0.110 0.890 6 O -0.370 6.370 7 C -0.021 4.021 8 N -0.374 5.374 9 C 0.110 3.890 10 C -0.214 4.214 11 C -0.099 4.099 12 C -0.200 4.200 13 C -0.116 4.116 14 C -0.270 4.270 15 S 0.045 5.955 16 C -0.032 4.032 17 H 0.040 0.960 18 C -0.174 4.174 19 C -0.556 4.556 20 H 0.068 0.932 21 C -0.175 4.175 22 N -0.549 5.549 23 Si 0.779 3.221 24 H -0.199 1.199 25 H -0.202 1.202 26 H -0.202 1.202 27 H 0.105 0.895 28 H 0.124 0.876 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.238 0.762 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.233 0.767 36 H 0.171 0.829 37 H 0.172 0.828 38 H 0.144 0.856 39 H 0.125 0.875 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.096 0.904 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.976 -5.422 4.868 25.059 hybrid contribution 0.272 2.669 -0.732 2.781 sum -23.704 -2.753 4.136 24.219 Atomic orbital electron populations 1.23447 0.91594 1.07310 1.05921 1.87587 1.09923 1.12129 1.98188 1.24031 0.98904 0.94537 1.07674 1.21676 0.90807 0.91677 0.89867 0.89046 1.86682 1.70485 1.63457 1.16396 1.22094 0.80714 0.96147 1.03178 1.44710 1.06886 1.03965 1.81841 1.17520 0.89167 0.86944 0.95342 1.20773 0.99762 0.90555 1.10268 1.21204 0.94133 0.97553 0.96980 1.21037 0.94594 0.97757 1.06611 1.21236 1.00209 0.92112 0.97993 1.21186 0.95033 0.96732 1.14077 1.84160 1.07620 1.13792 1.89921 1.20813 0.87749 0.95949 0.98737 0.95990 1.21483 1.00774 0.96831 0.98328 1.21293 0.98244 1.35958 1.00149 0.93228 1.25629 0.95003 0.96145 1.00695 1.69974 1.02926 1.44059 1.37967 0.85555 0.78021 0.78333 0.80160 1.19851 1.20198 1.20223 0.89525 0.87553 0.89276 0.87364 0.87320 0.76248 0.90046 0.89911 0.76651 0.82944 0.82821 0.85580 0.87517 0.94397 0.94589 0.90376 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.76 113.37 1.22 0.19 16 2 S -0.30 -5.10 22.02 -56.49 -1.24 -6.35 16 3 C -0.10 -1.19 5.64 71.98 0.41 -0.78 16 4 C 0.12 2.04 3.05 30.59 0.09 2.13 16 5 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 6 O -0.56 -11.46 12.88 -148.98 -1.92 -13.38 16 7 C 0.10 1.79 4.56 86.38 0.39 2.19 16 8 N -0.74 -20.86 5.63 -338.83 -1.91 -22.76 16 9 C 0.22 7.31 6.66 38.24 0.25 7.57 16 10 C -0.19 -5.08 9.31 22.38 0.21 -4.87 16 11 C -0.08 -2.12 10.04 22.29 0.22 -1.89 16 12 C -0.18 -6.14 10.04 22.28 0.22 -5.91 16 13 C -0.09 -3.91 8.80 22.39 0.20 -3.72 16 14 C -0.15 -6.41 6.05 22.70 0.14 -6.27 16 15 S -0.20 -8.96 19.77 -56.49 -1.12 -10.08 16 16 C 0.10 4.94 2.01 29.85 0.06 5.00 16 17 H 0.02 1.24 6.99 -2.39 -0.02 1.23 16 18 C -0.11 -5.66 8.90 71.98 0.64 -5.02 16 19 C -0.52 -28.50 6.92 25.60 0.18 -28.32 16 20 H 0.05 2.85 7.71 -2.91 -0.02 2.83 16 21 C 0.03 1.45 5.30 84.66 0.45 1.90 16 22 N -0.91 -51.10 11.38 21.45 0.24 -50.85 16 23 Si 0.95 43.79 29.54 68.60 2.03 45.81 16 24 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.39 5.12 9.05 -74.05 -0.67 4.45 16 33 H 0.08 1.19 7.95 -2.38 -0.02 1.17 16 34 H 0.08 1.10 7.95 -2.39 -0.02 1.09 16 35 H 0.40 12.83 7.02 -92.71 -0.65 12.18 16 36 H 0.15 2.85 6.74 -2.91 -0.02 2.83 16 37 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 38 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16 39 H 0.11 5.32 5.09 -2.91 -0.01 5.31 16 40 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.08 4.14 6.23 -2.39 -0.01 4.13 16 43 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -66.75 374.86 0.47 -66.29 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.30 Total: 29.15 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 4.68 Total: -37.83 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -1.66 Total: -73.62 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -1.92 Total: -13.38 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -14.07 SS G_CDS: -2.36 Total: -16.43 kcal Total: -66.75 0.47 -66.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583688990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.685 kcal (2) G-P(sol) polarization free energy of solvation -66.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds