Wall clock time and date at job start Tue Mar 31 2020 15:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99939 * 2 1 4 4 C 1.52998 * 109.47214 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46747 * 65.00316 * 4 3 2 6 6 C 1.37093 * 119.99743 * 264.46596 * 5 4 3 7 7 H 1.08005 * 119.99975 * 138.27202 * 6 5 4 8 8 C 1.38949 * 120.00136 * 318.27136 * 6 5 4 9 9 N 1.31411 * 120.00530 * 341.88574 * 8 6 5 10 10 Si 1.86803 * 119.99872 * 161.88518 * 8 6 5 11 11 H 1.48499 * 109.47316 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46971 * 120.00193 * 10 8 6 13 13 H 1.48499 * 109.47023 * 239.99793 * 10 8 6 14 14 C 1.34773 * 120.00032 * 84.47038 * 5 4 3 15 15 O 1.21292 * 120.00134 * 359.97438 * 14 5 4 16 16 C 1.50706 * 120.00057 * 179.97438 * 14 5 4 17 17 S 1.81398 * 109.47374 * 180.02562 * 16 14 5 18 18 C 1.81399 * 103.00149 * 180.02562 * 17 16 14 19 19 C 1.50693 * 109.47036 * 179.97438 * 18 17 16 20 20 C 1.38243 * 119.97639 * 269.72371 * 19 18 17 21 21 C 1.38198 * 120.02429 * 179.72927 * 20 19 18 22 22 C 1.38460 * 119.97616 * 0.56952 * 21 20 19 23 23 F 1.35095 * 120.02413 * 179.68502 * 22 21 20 24 24 C 1.38455 * 119.94731 * 359.70245 * 22 21 20 25 25 C 1.38203 * 119.97527 * 0.02562 * 24 22 21 26 26 H 1.09004 * 109.47082 * 299.99501 * 1 2 3 27 27 H 1.08994 * 109.47220 * 59.99834 * 1 2 3 28 28 H 1.09004 * 109.46985 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46846 * 59.99944 * 3 2 1 30 30 H 1.09000 * 109.47213 * 300.00356 * 3 2 1 31 31 H 1.08995 * 109.47211 * 304.99954 * 4 3 2 32 32 H 1.09006 * 109.46792 * 185.00136 * 4 3 2 33 33 H 0.96995 * 120.00898 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.46379 * 59.99996 * 16 14 5 35 35 H 1.08998 * 109.47093 * 300.00303 * 16 14 5 36 36 H 1.08994 * 109.46973 * 59.99817 * 18 17 16 37 37 H 1.08997 * 109.46608 * 299.99973 * 18 17 16 38 38 H 1.07999 * 119.98698 * 359.97438 * 20 19 18 39 39 H 1.08006 * 120.01199 * 180.25785 * 21 20 19 40 40 H 1.08004 * 120.01438 * 179.97438 * 24 22 21 41 41 H 1.08002 * 119.98612 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2061 -0.7859 -1.3049 7 1 3.8776 -1.3572 -2.1606 8 6 4.8622 -1.4196 -0.2568 9 7 5.5682 -0.7148 0.5986 10 14 4.7409 -3.2737 -0.0638 11 1 3.8934 -3.8300 -1.1488 12 1 6.0989 -3.8694 -0.1423 13 1 4.1347 -3.5956 1.2530 14 6 4.1540 1.3216 -2.3535 15 8 3.9497 2.5163 -2.3075 16 6 4.6073 0.6837 -3.6414 17 16 4.7543 1.9551 -4.9269 18 6 5.2999 1.0095 -6.3756 19 6 5.4699 1.9405 -7.5483 20 6 4.4075 2.1799 -8.3998 21 6 4.5606 3.0379 -9.4723 22 6 5.7821 3.6487 -9.7007 23 9 5.9347 4.4826 -10.7525 24 6 6.8470 3.4037 -8.8504 25 6 6.6899 2.5497 -7.7753 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8514 0.5683 0.8409 32 1 3.9784 2.1766 0.0890 33 1 6.0259 -1.1571 1.3305 34 1 3.8787 -0.0651 -3.9520 35 1 5.5758 0.2072 -3.4897 36 1 4.5535 0.2531 -6.6179 37 1 6.2508 0.5242 -6.1556 38 1 3.4563 1.6994 -8.2245 39 1 3.7293 3.2281 -10.1350 40 1 7.8004 3.8793 -9.0278 41 1 7.5206 2.3582 -7.1122 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590892570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:40 Heat of formation + Delta-G solvation = -96.263461 kcal Electronic energy + Delta-G solvation = -24558.105962 eV Core-core repulsion = 20672.247835 eV Total energy + Delta-G solvation = -3885.858127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -49.02977 -39.22951 -38.67094 -36.97103 -34.73328 -32.58022 -31.65901 -31.29259 -30.27375 -28.10128 -26.71847 -25.80091 -24.67598 -23.20884 -22.08318 -21.62735 -19.21320 -17.83119 -17.21753 -16.52648 -16.26371 -15.88416 -15.74809 -15.53802 -15.42800 -15.31288 -14.62571 -14.46861 -14.27091 -14.20250 -13.96240 -13.76911 -13.60482 -13.17408 -12.78989 -12.61965 -12.09853 -12.04648 -12.02245 -11.56458 -11.40094 -11.20537 -11.15409 -11.04578 -11.01771 -10.75816 -10.38301 -10.12248 -9.58589 -9.26096 -9.20030 -9.01252 -8.59333 -8.57839 -7.54600 -7.19716 -6.40094 -4.12831 0.81853 1.09072 2.08048 2.99105 3.11383 3.22578 3.25768 3.54847 3.79158 4.10931 4.11027 4.46223 4.53214 4.56006 4.72352 4.73649 4.98492 4.99256 5.12454 5.37895 5.52983 5.63087 5.69216 5.75982 5.82038 5.84939 5.86675 5.96018 5.96109 6.03077 6.06793 6.10836 6.29473 6.30171 6.36212 6.66010 6.72250 7.18343 7.40433 7.77570 7.95353 8.30064 9.04848 9.40393 9.84747 10.63818 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017122 B = 0.002667 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.894974 B =10497.472197 C =11241.599538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.051 3.949 4 C 0.123 3.877 5 N -0.424 5.424 6 C -0.331 4.331 7 H 0.085 0.915 8 C 0.051 3.949 9 N -0.861 5.861 10 Si 0.916 3.084 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.279 1.279 14 C 0.487 3.513 15 O -0.591 6.591 16 C -0.093 4.093 17 S -0.191 6.191 18 C -0.073 4.073 19 C -0.070 4.070 20 C -0.075 4.075 21 C -0.154 4.154 22 C 0.094 3.906 23 F -0.143 7.143 24 C -0.153 4.153 25 C -0.074 4.074 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.269 0.731 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 1.490 -12.580 12.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.027 4.027 4 C -0.001 4.001 5 N -0.142 5.142 6 C -0.459 4.459 7 H 0.102 0.898 8 C -0.155 4.155 9 N -0.498 5.498 10 Si 0.742 3.258 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.205 1.205 14 C 0.274 3.726 15 O -0.477 6.477 16 C -0.243 4.243 17 S 0.038 5.962 18 C -0.221 4.221 19 C -0.071 4.071 20 C -0.094 4.094 21 C -0.172 4.172 22 C 0.074 3.926 23 F -0.122 7.122 24 C -0.172 4.172 25 C -0.094 4.094 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.813 2.951 -12.248 12.728 hybrid contribution -0.056 -2.046 0.055 2.048 sum -1.869 0.905 -12.193 12.369 Atomic orbital electron populations 1.22648 0.83347 1.01737 0.98909 1.88119 1.17454 1.27789 1.95069 1.23054 0.96472 0.84316 0.98856 1.21367 0.89153 0.98975 0.90560 1.43171 1.56532 1.07280 1.07225 1.19274 1.36913 0.82039 1.07639 0.89777 1.25349 0.93577 0.99902 0.96671 1.69926 1.27382 1.36691 1.15764 0.86067 0.77804 0.83111 0.78774 1.19232 1.20966 1.20455 1.19561 0.81330 0.86214 0.85480 1.90567 1.56906 1.14863 1.85346 1.23338 1.06065 0.99411 0.95524 1.87511 1.89101 1.15871 1.03730 1.22392 1.05115 0.99389 0.95206 1.19333 0.93989 0.98511 0.95268 1.20939 0.98763 0.96665 0.93070 1.21105 0.96532 0.99422 1.00173 1.17741 0.95246 0.92959 0.86696 1.91486 1.96320 1.69426 1.54930 1.21116 0.98784 1.01249 0.96035 1.20963 0.97439 0.94840 0.96113 0.95122 0.94939 0.90418 0.94172 0.93886 0.87516 0.91062 0.92063 0.88703 0.87700 0.89280 0.89133 0.84678 0.84701 0.84664 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.63 10.44 -35.23 -0.37 -8.00 16 3 C 0.05 1.04 6.24 37.16 0.23 1.27 16 4 C 0.12 2.90 5.26 -4.04 -0.02 2.88 16 5 N -0.42 -10.43 2.45 -114.81 -0.28 -10.71 16 6 C -0.33 -8.16 8.29 -14.94 -0.12 -8.29 16 7 H 0.08 2.00 7.21 -52.48 -0.38 1.62 16 8 C 0.05 1.27 4.95 -17.47 -0.09 1.19 16 9 N -0.86 -22.34 11.66 55.50 0.65 -21.69 16 10 Si 0.92 19.38 29.59 -169.99 -5.03 14.35 16 11 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 C 0.49 11.67 7.61 -10.98 -0.08 11.58 16 15 O -0.59 -15.43 15.54 5.55 0.09 -15.34 16 16 C -0.09 -1.81 5.15 36.01 0.19 -1.63 16 17 S -0.19 -3.36 20.86 -107.50 -2.24 -5.60 16 18 C -0.07 -0.92 6.07 36.00 0.22 -0.70 16 19 C -0.07 -0.82 5.14 -104.62 -0.54 -1.36 16 20 C -0.07 -0.81 9.70 -39.59 -0.38 -1.19 16 21 C -0.15 -1.60 10.03 -39.51 -0.40 -1.99 16 22 C 0.09 1.05 7.30 -39.42 -0.29 0.76 16 23 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 24 C -0.15 -1.61 10.03 -39.51 -0.40 -2.00 16 25 C -0.07 -0.81 9.70 -39.59 -0.38 -1.19 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.11 2.68 5.81 -51.93 -0.30 2.38 16 32 H 0.07 1.69 7.59 -51.93 -0.39 1.30 16 33 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 34 H 0.09 1.72 7.70 -51.92 -0.40 1.32 16 35 H 0.10 2.02 8.10 -51.92 -0.42 1.60 16 36 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 37 H 0.09 1.04 8.09 -51.93 -0.42 0.62 16 38 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 41 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 369.44 15.07 5.57 5.57 Total: -1.00 -29.90 369.44 -8.21 -38.11 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.67 Total: 4.01 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -0.95 Total: 0.92 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.37 Total: -32.40 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.28 Total: -23.34 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -2.24 Total: -5.60 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.90 -8.21 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.152 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds