Wall clock time and date at job start Tue Mar 31 2020 15:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99939 * 2 1 4 4 C 1.52998 * 109.47214 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46747 * 65.00316 * 4 3 2 6 6 C 1.37093 * 119.99743 * 264.46596 * 5 4 3 7 7 H 1.08005 * 119.99975 * 138.27202 * 6 5 4 8 8 C 1.38949 * 120.00136 * 318.27136 * 6 5 4 9 9 N 1.31411 * 120.00530 * 341.88574 * 8 6 5 10 10 Si 1.86803 * 119.99872 * 161.88518 * 8 6 5 11 11 H 1.48499 * 109.47316 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46971 * 120.00193 * 10 8 6 13 13 H 1.48499 * 109.47023 * 239.99793 * 10 8 6 14 14 C 1.34773 * 120.00032 * 84.47038 * 5 4 3 15 15 O 1.21292 * 120.00134 * 359.97438 * 14 5 4 16 16 C 1.50706 * 120.00057 * 179.97438 * 14 5 4 17 17 S 1.81398 * 109.47374 * 180.02562 * 16 14 5 18 18 C 1.81399 * 103.00149 * 180.02562 * 17 16 14 19 19 C 1.50693 * 109.47036 * 179.97438 * 18 17 16 20 20 C 1.38243 * 119.97639 * 269.72371 * 19 18 17 21 21 C 1.38198 * 120.02429 * 179.72927 * 20 19 18 22 22 C 1.38460 * 119.97616 * 0.56952 * 21 20 19 23 23 F 1.35095 * 120.02413 * 179.68502 * 22 21 20 24 24 C 1.38455 * 119.94731 * 359.70245 * 22 21 20 25 25 C 1.38203 * 119.97527 * 0.02562 * 24 22 21 26 26 H 1.09004 * 109.47082 * 299.99501 * 1 2 3 27 27 H 1.08994 * 109.47220 * 59.99834 * 1 2 3 28 28 H 1.09004 * 109.46985 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46846 * 59.99944 * 3 2 1 30 30 H 1.09000 * 109.47213 * 300.00356 * 3 2 1 31 31 H 1.08995 * 109.47211 * 304.99954 * 4 3 2 32 32 H 1.09006 * 109.46792 * 185.00136 * 4 3 2 33 33 H 0.96995 * 120.00898 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.46379 * 59.99996 * 16 14 5 35 35 H 1.08998 * 109.47093 * 300.00303 * 16 14 5 36 36 H 1.08994 * 109.46973 * 59.99817 * 18 17 16 37 37 H 1.08997 * 109.46608 * 299.99973 * 18 17 16 38 38 H 1.07999 * 119.98698 * 359.97438 * 20 19 18 39 39 H 1.08006 * 120.01199 * 180.25785 * 21 20 19 40 40 H 1.08004 * 120.01438 * 179.97438 * 24 22 21 41 41 H 1.08002 * 119.98612 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2061 -0.7859 -1.3049 7 1 3.8776 -1.3572 -2.1606 8 6 4.8622 -1.4196 -0.2568 9 7 5.5682 -0.7148 0.5986 10 14 4.7409 -3.2737 -0.0638 11 1 3.8934 -3.8300 -1.1488 12 1 6.0989 -3.8694 -0.1423 13 1 4.1347 -3.5956 1.2530 14 6 4.1540 1.3216 -2.3535 15 8 3.9497 2.5163 -2.3075 16 6 4.6073 0.6837 -3.6414 17 16 4.7543 1.9551 -4.9269 18 6 5.2999 1.0095 -6.3756 19 6 5.4699 1.9405 -7.5483 20 6 4.4075 2.1799 -8.3998 21 6 4.5606 3.0379 -9.4723 22 6 5.7821 3.6487 -9.7007 23 9 5.9347 4.4826 -10.7525 24 6 6.8470 3.4037 -8.8504 25 6 6.6899 2.5497 -7.7753 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8514 0.5683 0.8409 32 1 3.9784 2.1766 0.0890 33 1 6.0259 -1.1571 1.3305 34 1 3.8787 -0.0651 -3.9520 35 1 5.5758 0.2072 -3.4897 36 1 4.5535 0.2531 -6.6179 37 1 6.2508 0.5242 -6.1556 38 1 3.4563 1.6994 -8.2245 39 1 3.7293 3.2281 -10.1350 40 1 7.8004 3.8793 -9.0278 41 1 7.5206 2.3582 -7.1122 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590892570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:38 Heat of formation + Delta-G solvation = -111.692519 kcal Electronic energy + Delta-G solvation = -24558.775017 eV Core-core repulsion = 20672.247835 eV Total energy + Delta-G solvation = -3886.527181 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.90439 -40.51474 -40.05201 -38.54871 -36.59899 -33.56336 -33.46631 -32.10127 -31.96080 -29.69143 -27.67921 -27.26330 -26.46638 -24.02282 -23.73321 -22.57582 -21.06662 -18.99346 -18.62150 -17.99336 -17.40043 -17.25798 -17.16448 -16.95673 -16.62118 -16.34915 -16.26792 -16.13466 -15.84559 -15.43762 -15.05562 -14.77488 -14.57461 -14.43557 -14.31435 -13.87198 -13.64715 -13.38258 -13.14342 -12.99492 -12.91198 -12.81224 -12.65801 -12.49545 -12.44787 -12.03677 -11.94732 -11.80991 -11.05294 -10.88978 -10.57872 -10.42079 -10.06808 -9.50521 -9.44349 -8.58014 -8.27645 -6.06021 -0.13763 0.28416 0.85645 1.43172 1.51282 1.62025 1.72254 1.96934 2.35193 2.69307 2.91324 3.01030 3.16930 3.27569 3.64825 3.72714 3.97860 4.11872 4.13901 4.23194 4.31115 4.32139 4.43842 4.52788 4.55396 4.56134 4.61425 4.61798 4.63515 4.78838 4.86781 4.98325 5.00259 5.14865 5.24013 5.29836 5.49841 5.51515 5.90073 6.01397 6.39091 6.40472 7.15255 7.53758 7.98203 8.77153 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017122 B = 0.002667 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.894974 B =10497.472197 C =11241.599538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.064 3.936 4 C 0.121 3.879 5 N -0.434 5.434 6 C -0.339 4.339 7 H 0.092 0.908 8 C 0.012 3.988 9 N -0.895 5.895 10 Si 0.980 3.020 11 H -0.258 1.258 12 H -0.280 1.280 13 H -0.283 1.283 14 C 0.472 3.528 15 O -0.620 6.620 16 C -0.081 4.081 17 S -0.236 6.236 18 C -0.052 4.052 19 C -0.085 4.085 20 C -0.077 4.077 21 C -0.155 4.155 22 C 0.082 3.918 23 F -0.147 7.147 24 C -0.156 4.156 25 C -0.079 4.079 26 H 0.051 0.949 27 H 0.039 0.961 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.271 0.729 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.399 0.188 -13.835 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.014 4.014 4 C -0.003 4.003 5 N -0.152 5.152 6 C -0.467 4.467 7 H 0.110 0.890 8 C -0.192 4.192 9 N -0.532 5.532 10 Si 0.804 3.196 11 H -0.181 1.181 12 H -0.206 1.206 13 H -0.209 1.209 14 C 0.261 3.739 15 O -0.508 6.508 16 C -0.231 4.231 17 S -0.007 6.007 18 C -0.200 4.200 19 C -0.087 4.087 20 C -0.097 4.097 21 C -0.174 4.174 22 C 0.062 3.938 23 F -0.126 7.126 24 C -0.175 4.175 25 C -0.098 4.098 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.114 0.886 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.167 0.833 39 H 0.172 0.828 40 H 0.170 0.830 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.484 1.641 -13.503 13.827 hybrid contribution 0.141 -1.571 0.367 1.619 sum -2.342 0.070 -13.137 13.344 Atomic orbital electron populations 1.22896 0.80572 1.03434 1.00240 1.88049 1.20508 1.27658 1.95320 1.22805 0.94350 0.84693 0.99526 1.21298 0.91435 0.97605 0.89945 1.43402 1.56576 1.07578 1.07641 1.19539 1.36873 0.82170 1.08103 0.89029 1.26118 0.93026 1.03820 0.96207 1.70026 1.28317 1.38411 1.16414 0.85090 0.77862 0.78143 0.78514 1.18129 1.20559 1.20934 1.20264 0.80821 0.86079 0.86748 1.90533 1.58028 1.16132 1.86097 1.23120 1.06072 0.99742 0.94167 1.87607 1.89721 1.17528 1.05867 1.22407 1.06053 0.99039 0.92467 1.19394 0.94746 0.99248 0.95316 1.21153 0.99111 0.96534 0.92856 1.21340 0.96899 0.98869 1.00277 1.17982 0.95892 0.93128 0.86791 1.91476 1.96379 1.69603 1.55148 1.21329 0.99485 1.01013 0.95638 1.21154 0.97668 0.94646 0.96374 0.93040 0.94281 0.88605 0.91515 0.94998 0.89322 0.92542 0.91977 0.87348 0.87658 0.87509 0.87851 0.83257 0.82819 0.82970 0.83556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -16.19 10.44 -148.98 -1.56 -17.75 16 3 C 0.06 2.62 6.24 71.98 0.45 3.07 16 4 C 0.12 5.85 5.26 86.38 0.45 6.30 16 5 N -0.43 -21.68 2.45 -635.54 -1.56 -23.24 16 6 C -0.34 -16.70 8.29 84.04 0.70 -16.00 16 7 H 0.09 4.28 7.21 -2.91 -0.02 4.26 16 8 C 0.01 0.57 4.95 84.93 0.42 0.99 16 9 N -0.89 -46.98 11.66 21.66 0.25 -46.73 16 10 Si 0.98 39.18 29.59 68.60 2.03 41.21 16 11 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 12 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 13 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 14 C 0.47 23.00 7.61 87.66 0.67 23.67 16 15 O -0.62 -33.21 15.54 -3.07 -0.05 -33.25 16 16 C -0.08 -3.14 5.15 71.24 0.37 -2.77 16 17 S -0.24 -8.20 20.86 -56.49 -1.18 -9.37 16 18 C -0.05 -1.21 6.07 71.23 0.43 -0.78 16 19 C -0.09 -1.85 5.14 -19.86 -0.10 -1.95 16 20 C -0.08 -1.50 9.70 22.26 0.22 -1.29 16 21 C -0.16 -2.93 10.03 22.31 0.22 -2.71 16 22 C 0.08 1.71 7.30 22.37 0.16 1.87 16 23 F -0.15 -3.23 17.27 44.97 0.78 -2.45 16 24 C -0.16 -3.03 10.03 22.31 0.22 -2.80 16 25 C -0.08 -1.60 9.70 22.26 0.22 -1.38 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 29 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 4.58 5.81 -2.39 -0.01 4.57 16 32 H 0.06 2.80 7.59 -2.38 -0.02 2.79 16 33 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 34 H 0.11 3.84 7.70 -2.39 -0.02 3.82 16 35 H 0.11 4.03 8.10 -2.39 -0.02 4.01 16 36 H 0.11 2.11 8.08 -2.39 -0.02 2.09 16 37 H 0.10 2.14 8.09 -2.39 -0.02 2.12 16 38 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 41 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -64.74 369.44 5.42 -59.32 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 1.03 Total: 24.08 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.68 Total: 8.18 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -1.31 Total: -69.97 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -1.60 Total: -51.00 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.78 Total: -2.45 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.18 Total: -9.37 kcal Total: -64.74 5.42 -59.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.375 kcal (2) G-P(sol) polarization free energy of solvation -64.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds