Wall clock time and date at job start Tue Mar 31 2020 15:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35717 * 116.99690 * 2 1 4 4 C 1.38824 * 120.14860 * 270.27425 * 3 2 1 5 5 F 1.35097 * 119.93965 * 0.04629 * 4 3 2 6 6 C 1.38267 * 120.11329 * 180.29829 * 4 3 2 7 7 C 1.38451 * 120.40968 * 359.72512 * 6 4 3 8 8 C 1.38088 * 120.29009 * 359.97438 * 7 6 4 9 9 F 1.35095 * 120.06027 * 180.02562 * 8 7 6 10 10 C 1.39993 * 119.87742 * 0.02562 * 8 7 6 11 11 C 1.47385 * 120.19926 * 180.02562 * 10 8 7 12 12 O 1.21603 * 119.99905 * 90.00488 * 11 10 8 13 13 N 1.34781 * 120.00064 * 270.00088 * 11 10 8 14 14 C 1.47419 * 125.64850 * 359.97438 * 13 11 10 15 15 C 1.54905 * 104.83258 * 155.91019 * 14 13 11 16 16 C 1.55153 * 101.58432 * 37.00633 * 15 14 13 17 17 O 1.42899 * 110.72123 * 83.04292 * 16 15 14 18 18 C 1.50702 * 110.72079 * 206.13591 * 16 15 14 19 19 H 1.08002 * 120.00299 * 357.56389 * 18 16 15 20 20 C 1.37884 * 119.99942 * 177.27948 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.47319 * 125.61416 * 180.20335 * 13 11 10 27 27 H 1.09004 * 109.46962 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47433 * 299.99712 * 1 2 3 29 29 H 1.09002 * 109.47293 * 60.00040 * 1 2 3 30 30 H 1.08001 * 119.79544 * 179.69748 * 6 4 3 31 31 H 1.07998 * 119.85324 * 179.97438 * 7 6 4 32 32 H 1.08994 * 110.36742 * 37.06455 * 14 13 11 33 33 H 1.09008 * 110.36374 * 274.74316 * 14 13 11 34 34 H 1.09004 * 111.00291 * 278.93328 * 15 14 13 35 35 H 1.08998 * 111.04320 * 155.09778 * 15 14 13 36 36 H 0.96699 * 114.00083 * 182.43988 * 17 16 15 37 37 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 38 38 H 1.09004 * 110.06766 * 61.67566 * 26 13 11 39 39 H 1.08999 * 109.85130 * 300.41923 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 2.3565 1.8331 -1.2004 5 9 2.0448 1.2359 -2.3714 6 6 2.9897 3.0623 -1.1996 7 6 3.3130 3.6833 -0.0052 8 6 3.0055 3.0807 1.1986 9 9 3.3228 3.6910 2.3614 10 6 2.3645 1.8362 1.2119 11 6 2.0325 1.1869 2.4927 12 8 0.9593 1.4013 3.0228 13 7 2.9183 0.3555 3.0764 14 6 4.2490 0.0079 2.5456 15 6 5.0715 -0.4201 3.7865 16 6 4.0013 -1.1642 4.6281 17 8 3.8592 -2.5153 4.1851 18 6 4.3498 -1.1196 6.0936 19 1 5.2660 -0.6479 6.4168 20 6 3.4960 -1.6759 7.0225 21 7 2.3802 -2.2502 6.6290 22 14 3.9243 -1.6139 8.8396 23 1 5.2238 -0.9179 9.0185 24 1 2.8637 -0.8774 9.5733 25 1 4.0254 -2.9965 9.3719 26 6 2.7145 -0.3596 4.3481 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.2339 3.5408 -2.1365 31 1 3.8079 4.6431 -0.0150 32 1 4.7055 0.8750 2.0685 33 1 4.1714 -0.8182 1.8386 34 1 5.4535 0.4497 4.3210 35 1 5.8833 -1.0910 3.5056 36 1 3.1758 -3.0132 4.6542 37 1 1.7798 -2.6419 7.2825 38 1 1.8646 -1.0369 4.2642 39 1 2.5426 0.3562 5.1519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847418.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:04 Heat of formation + Delta-G solvation = -173.457913 kcal Electronic energy + Delta-G solvation = -28971.290922 eV Core-core repulsion = 24515.872216 eV Total energy + Delta-G solvation = -4455.418706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.16446 -49.12307 -40.38559 -38.88256 -37.46564 -37.12688 -34.33244 -32.21709 -31.52762 -30.15143 -29.90553 -27.89410 -27.14069 -25.56084 -24.00796 -22.81850 -22.46452 -19.86705 -19.48630 -18.45299 -17.93431 -17.58506 -17.19514 -16.70518 -16.28077 -16.13436 -15.67089 -15.44091 -15.15857 -14.87028 -14.74928 -14.72804 -14.57004 -14.22385 -13.45593 -13.15063 -13.00981 -12.92495 -12.76428 -12.48640 -12.10236 -12.02254 -11.71627 -11.63193 -11.42236 -11.09388 -10.83637 -10.67309 -10.48606 -10.32446 -10.19444 -9.75832 -9.36287 -9.27196 -8.82962 -8.69913 -8.33603 -7.99642 -6.31048 -4.39466 0.44887 0.54093 2.72532 2.79949 3.18835 3.24314 3.28435 3.31921 3.48356 3.87838 3.96106 4.25197 4.31090 4.56221 4.64353 4.92838 4.98749 5.14322 5.29783 5.35936 5.41945 5.51056 5.56082 5.61849 5.66299 5.70921 5.80235 6.03612 6.09514 6.22361 6.46885 6.72213 6.81340 6.85715 7.10806 7.21568 7.32612 7.71236 7.96272 8.06017 8.47412 8.64629 9.28595 9.38553 10.76903 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019613 B = 0.003871 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.260828 B = 7231.483624 C = 7664.911297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.320 6.320 3 C 0.126 3.874 4 C 0.070 3.930 5 F -0.125 7.125 6 C -0.103 4.103 7 C -0.132 4.132 8 C 0.136 3.864 9 F -0.119 7.119 10 C -0.140 4.140 11 C 0.573 3.427 12 O -0.537 6.537 13 N -0.592 5.592 14 C 0.101 3.899 15 C -0.117 4.117 16 C 0.249 3.751 17 O -0.584 6.584 18 C -0.537 4.537 19 H 0.068 0.932 20 C 0.070 3.930 21 N -0.895 5.895 22 Si 0.904 3.096 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.104 3.896 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.384 0.616 37 H 0.270 0.730 38 H 0.069 0.931 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.579 9.312 -15.579 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.236 6.236 3 C 0.080 3.920 4 C 0.050 3.950 5 F -0.104 7.104 6 C -0.122 4.122 7 C -0.151 4.151 8 C 0.115 3.885 9 F -0.097 7.097 10 C -0.144 4.144 11 C 0.358 3.642 12 O -0.416 6.416 13 N -0.323 5.323 14 C -0.022 4.022 15 C -0.155 4.155 16 C 0.208 3.792 17 O -0.393 6.393 18 C -0.575 4.575 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.534 5.534 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.017 4.017 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.235 0.765 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.352 9.341 -15.631 18.213 hybrid contribution -0.520 0.012 1.321 1.420 sum -0.169 9.352 -14.310 17.096 Atomic orbital electron populations 1.23194 0.77053 1.04350 1.01448 1.86036 1.21139 1.22478 1.93940 1.18325 0.97637 0.86776 0.89268 1.17856 1.03322 0.93004 0.80855 1.91526 1.91022 1.83200 1.44613 1.20971 0.98283 0.93273 0.99654 1.20943 1.02669 1.01922 0.89586 1.17451 0.97946 0.90661 0.82402 1.91593 1.90129 1.81800 1.46173 1.20397 1.03534 0.95191 0.95325 1.17166 0.84237 0.79605 0.83180 1.90802 1.23066 1.63314 1.64432 1.48784 1.16310 1.42861 1.24318 1.22370 0.82833 0.99195 0.97778 1.22754 0.98024 1.00079 0.94595 1.19487 0.87827 0.79956 0.91892 1.86102 1.62535 1.25163 1.65496 1.21560 1.07095 1.38420 0.90467 0.91369 1.25078 0.94324 0.93927 0.99938 1.69654 1.11030 1.37528 1.35202 0.86337 0.78628 0.77943 0.83946 1.19550 1.20759 1.20704 1.23192 1.01802 0.95271 0.81460 0.87915 0.91999 0.93251 0.82781 0.82713 0.92343 0.91121 0.90387 0.90252 0.76480 0.91981 0.91282 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.13 101.05 1.12 1.56 16 2 O -0.32 -5.13 9.73 -18.86 -0.18 -5.31 16 3 C 0.13 1.89 5.74 -38.65 -0.22 1.66 16 4 C 0.07 0.84 7.30 -39.35 -0.29 0.55 16 5 F -0.13 -1.52 17.11 2.25 0.04 -1.48 16 6 C -0.10 -0.92 10.00 -39.49 -0.39 -1.31 16 7 C -0.13 -1.26 10.00 -39.56 -0.40 -1.66 16 8 C 0.14 1.88 7.28 -38.98 -0.28 1.59 16 9 F -0.12 -1.83 16.83 2.25 0.04 -1.79 16 10 C -0.14 -2.30 4.54 -104.80 -0.48 -2.77 16 11 C 0.57 11.87 6.46 -12.54 -0.08 11.79 16 12 O -0.54 -12.74 17.19 5.27 0.09 -12.65 16 13 N -0.59 -12.61 3.33 -171.57 -0.57 -13.18 16 14 C 0.10 1.88 6.67 -2.53 -0.02 1.86 16 15 C -0.12 -2.35 6.23 -24.59 -0.15 -2.50 16 16 C 0.25 6.02 0.85 -89.94 -0.08 5.94 16 17 O -0.58 -14.68 13.08 -35.23 -0.46 -15.14 16 18 C -0.54 -13.97 8.11 -34.44 -0.28 -14.25 16 19 H 0.07 1.75 7.77 -52.49 -0.41 1.34 16 20 C 0.07 1.83 5.27 -17.82 -0.09 1.73 16 21 N -0.90 -23.68 10.96 55.43 0.61 -23.07 16 22 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.10 2.52 5.39 -2.90 -0.02 2.51 16 27 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.06 0.91 7.90 -51.93 -0.41 0.50 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 31 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.06 0.93 7.69 -51.93 -0.40 0.53 16 33 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 34 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.38 9.91 7.24 45.56 0.33 10.24 16 37 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.07 1.82 8.00 -51.93 -0.42 1.41 16 39 H 0.07 1.84 7.81 -51.93 -0.41 1.44 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -30.37 345.50 -5.70 -36.07 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -3.80 Total: 9.29 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -1.65 Total: 6.71 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.04 Total: -36.25 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.55 Total: -33.11 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.08 Total: -3.27 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.37 -5.70 -36.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847418.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.386 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds