Wall clock time and date at job start Tue Mar 31 2020 15:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35717 * 116.99690 * 2 1 4 4 C 1.38824 * 120.14860 * 270.27425 * 3 2 1 5 5 F 1.35097 * 119.93965 * 0.04629 * 4 3 2 6 6 C 1.38267 * 120.11329 * 180.29829 * 4 3 2 7 7 C 1.38451 * 120.40968 * 359.72512 * 6 4 3 8 8 C 1.38088 * 120.29009 * 359.97438 * 7 6 4 9 9 F 1.35095 * 120.06027 * 180.02562 * 8 7 6 10 10 C 1.39993 * 119.87742 * 0.02562 * 8 7 6 11 11 C 1.47385 * 120.19926 * 180.02562 * 10 8 7 12 12 O 1.21603 * 119.99905 * 90.00488 * 11 10 8 13 13 N 1.34781 * 120.00064 * 270.00088 * 11 10 8 14 14 C 1.47419 * 125.64850 * 359.97438 * 13 11 10 15 15 C 1.54905 * 104.83258 * 155.91019 * 14 13 11 16 16 C 1.55153 * 101.58432 * 37.00633 * 15 14 13 17 17 O 1.42899 * 110.72123 * 83.04292 * 16 15 14 18 18 C 1.50702 * 110.72079 * 206.13591 * 16 15 14 19 19 H 1.08002 * 120.00299 * 357.56389 * 18 16 15 20 20 C 1.37884 * 119.99942 * 177.27948 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.47319 * 125.61416 * 180.20335 * 13 11 10 27 27 H 1.09004 * 109.46962 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47433 * 299.99712 * 1 2 3 29 29 H 1.09002 * 109.47293 * 60.00040 * 1 2 3 30 30 H 1.08001 * 119.79544 * 179.69748 * 6 4 3 31 31 H 1.07998 * 119.85324 * 179.97438 * 7 6 4 32 32 H 1.08994 * 110.36742 * 37.06455 * 14 13 11 33 33 H 1.09008 * 110.36374 * 274.74316 * 14 13 11 34 34 H 1.09004 * 111.00291 * 278.93328 * 15 14 13 35 35 H 1.08998 * 111.04320 * 155.09778 * 15 14 13 36 36 H 0.96699 * 114.00083 * 182.43988 * 17 16 15 37 37 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 38 38 H 1.09004 * 110.06766 * 61.67566 * 26 13 11 39 39 H 1.08999 * 109.85130 * 300.41923 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 2.3565 1.8331 -1.2004 5 9 2.0448 1.2359 -2.3714 6 6 2.9897 3.0623 -1.1996 7 6 3.3130 3.6833 -0.0052 8 6 3.0055 3.0807 1.1986 9 9 3.3228 3.6910 2.3614 10 6 2.3645 1.8362 1.2119 11 6 2.0325 1.1869 2.4927 12 8 0.9593 1.4013 3.0228 13 7 2.9183 0.3555 3.0764 14 6 4.2490 0.0079 2.5456 15 6 5.0715 -0.4201 3.7865 16 6 4.0013 -1.1642 4.6281 17 8 3.8592 -2.5153 4.1851 18 6 4.3498 -1.1196 6.0936 19 1 5.2660 -0.6479 6.4168 20 6 3.4960 -1.6759 7.0225 21 7 2.3802 -2.2502 6.6290 22 14 3.9243 -1.6139 8.8396 23 1 5.2238 -0.9179 9.0185 24 1 2.8637 -0.8774 9.5733 25 1 4.0254 -2.9965 9.3719 26 6 2.7145 -0.3596 4.3481 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.2339 3.5408 -2.1365 31 1 3.8079 4.6431 -0.0150 32 1 4.7055 0.8750 2.0685 33 1 4.1714 -0.8182 1.8386 34 1 5.4535 0.4497 4.3210 35 1 5.8833 -1.0910 3.5056 36 1 3.1758 -3.0132 4.6542 37 1 1.7798 -2.6419 7.2825 38 1 1.8646 -1.0369 4.2642 39 1 2.5426 0.3562 5.1519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847418.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:04 Heat of formation + Delta-G solvation = -195.084208 kcal Electronic energy + Delta-G solvation = -28972.228709 eV Core-core repulsion = 24515.872216 eV Total energy + Delta-G solvation = -4456.356492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.21437 -50.07845 -41.69747 -40.35150 -38.95551 -38.39949 -36.18698 -34.24013 -32.75512 -31.54726 -31.07058 -29.69983 -28.21658 -27.31740 -25.41014 -23.97536 -23.78100 -21.57071 -21.04046 -19.54854 -19.21859 -18.94620 -18.83179 -17.95283 -17.47230 -17.31278 -17.23091 -16.69625 -16.55939 -16.35072 -16.11836 -16.08599 -15.72383 -15.50176 -14.88250 -14.83634 -14.78237 -14.24045 -13.92926 -13.80474 -13.54169 -13.47750 -13.29585 -12.98977 -12.91227 -12.66434 -12.56824 -12.37938 -12.27181 -12.15846 -11.50989 -11.27749 -11.22556 -10.68902 -10.37685 -10.27002 -9.79234 -9.76566 -8.29997 -6.46110 -0.52478 -0.39756 1.21853 1.38946 1.42206 1.53227 1.74732 1.94593 2.34370 2.36203 2.87267 2.94739 2.96534 3.21333 3.58486 3.70087 3.74170 3.93888 4.01913 4.12467 4.18407 4.23840 4.28637 4.47753 4.53927 4.57476 4.60126 4.62752 4.73884 4.85260 4.91289 5.02806 5.11113 5.27935 5.36145 5.42415 5.70365 5.99583 6.05531 6.39651 6.61327 6.83569 7.24518 7.32467 8.76757 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019613 B = 0.003871 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.260828 B = 7231.483624 C = 7664.911297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.345 6.345 3 C 0.107 3.893 4 C 0.071 3.929 5 F -0.125 7.125 6 C -0.070 4.070 7 C -0.104 4.104 8 C 0.121 3.879 9 F -0.134 7.134 10 C -0.169 4.169 11 C 0.570 3.430 12 O -0.582 6.582 13 N -0.599 5.599 14 C 0.109 3.891 15 C -0.110 4.110 16 C 0.235 3.765 17 O -0.587 6.587 18 C -0.558 4.558 19 H 0.070 0.930 20 C 0.026 3.974 21 N -0.917 5.917 22 Si 0.965 3.035 23 H -0.264 1.264 24 H -0.284 1.284 25 H -0.276 1.276 26 C 0.121 3.879 27 H 0.115 0.885 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.205 0.795 31 H 0.201 0.799 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.377 0.623 37 H 0.271 0.729 38 H 0.035 0.965 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 11.444 -18.074 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.262 6.262 3 C 0.061 3.939 4 C 0.051 3.949 5 F -0.103 7.103 6 C -0.088 4.088 7 C -0.122 4.122 8 C 0.101 3.899 9 F -0.112 7.112 10 C -0.174 4.174 11 C 0.358 3.642 12 O -0.464 6.464 13 N -0.330 5.330 14 C -0.013 4.013 15 C -0.147 4.147 16 C 0.195 3.805 17 O -0.395 6.395 18 C -0.596 4.596 19 H 0.088 0.912 20 C -0.175 4.175 21 N -0.557 5.557 22 Si 0.791 3.209 23 H -0.188 1.188 24 H -0.210 1.210 25 H -0.202 1.202 26 C -0.002 4.002 27 H 0.133 0.867 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.222 0.778 31 H 0.218 0.782 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.227 0.773 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.375 11.479 -18.160 21.614 hybrid contribution -1.183 -0.613 2.011 2.412 sum 1.192 10.866 -16.148 19.500 Atomic orbital electron populations 1.23277 0.76287 1.05214 1.01313 1.85986 1.22195 1.23904 1.94125 1.18520 0.98492 0.86862 0.90003 1.17956 1.03453 0.93804 0.79672 1.91535 1.91081 1.83467 1.44230 1.21533 0.94698 0.91151 1.01390 1.21415 1.00505 1.02748 0.87506 1.17810 0.98651 0.89999 0.83466 1.91556 1.90361 1.81871 1.47450 1.20069 1.07251 0.96873 0.93168 1.17912 0.83209 0.78673 0.84356 1.90751 1.24875 1.64606 1.66159 1.48855 1.17729 1.42941 1.23455 1.22432 0.81211 1.00637 0.97037 1.22752 0.97427 1.00068 0.94497 1.19689 0.88912 0.79585 0.92308 1.86090 1.62194 1.25773 1.65455 1.21873 1.07291 1.38687 0.91716 0.91207 1.25835 0.94189 0.93613 1.03854 1.69761 1.11680 1.37922 1.36310 0.85388 0.78415 0.77997 0.79143 1.18751 1.20993 1.20166 1.22697 1.00955 0.94104 0.82412 0.86696 0.94681 0.90691 0.77770 0.78235 0.88885 0.91089 0.89521 0.88675 0.77302 0.91965 0.94699 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.13 113.37 1.26 2.14 16 2 O -0.35 -11.21 9.73 -90.39 -0.88 -12.09 16 3 C 0.11 3.10 5.74 22.87 0.13 3.23 16 4 C 0.07 1.46 7.30 22.42 0.16 1.63 16 5 F -0.12 -2.61 17.11 44.97 0.77 -1.84 16 6 C -0.07 -0.83 10.00 22.33 0.22 -0.61 16 7 C -0.10 -1.42 10.00 22.28 0.22 -1.20 16 8 C 0.12 3.08 7.28 22.66 0.17 3.24 16 9 F -0.13 -3.97 16.83 44.97 0.76 -3.21 16 10 C -0.17 -5.49 4.54 -19.98 -0.09 -5.58 16 11 C 0.57 24.69 6.46 86.65 0.56 25.24 16 12 O -0.58 -29.57 17.19 -4.04 -0.07 -29.64 16 13 N -0.60 -26.51 3.33 -814.97 -2.72 -29.23 16 14 C 0.11 3.98 6.67 86.85 0.58 4.56 16 15 C -0.11 -4.36 6.23 31.98 0.20 -4.16 16 16 C 0.24 11.71 0.85 -10.35 -0.01 11.70 16 17 O -0.59 -30.48 13.08 -148.98 -1.95 -32.43 16 18 C -0.56 -29.62 8.11 25.60 0.21 -29.41 16 19 H 0.07 3.59 7.77 -2.91 -0.02 3.57 16 20 C 0.03 1.37 5.27 84.66 0.45 1.82 16 21 N -0.92 -50.49 10.96 21.45 0.24 -50.26 16 22 Si 0.97 42.38 29.54 68.60 2.03 44.41 16 23 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 C 0.12 6.26 5.39 86.67 0.47 6.73 16 27 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.03 1.11 7.90 -2.39 -0.02 1.09 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.21 0.53 8.06 -2.91 -0.02 0.51 16 31 H 0.20 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.09 2.77 7.69 -2.39 -0.02 2.76 16 33 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 34 H 0.09 3.27 8.03 -2.38 -0.02 3.25 16 35 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 36 H 0.38 20.44 7.24 -74.06 -0.54 19.90 16 37 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16 38 H 0.03 1.99 8.00 -2.39 -0.02 1.97 16 39 H 0.04 2.15 7.81 -2.39 -0.02 2.13 16 Total: -1.00 -71.68 345.50 3.28 -68.41 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.57 Total: 26.57 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 4.53 Total: 19.32 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -2.48 Total: -79.49 kcal Atomic # 8 Polarization: -71.27 SS G_CDS: -2.90 Total: -74.17 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 1.53 Total: -5.05 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -71.68 3.28 -68.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847418.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.676 kcal (2) G-P(sol) polarization free energy of solvation -71.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds