Wall clock time and date at job start Tue Mar 31 2020 15:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35712 * 117.00329 * 2 1 4 4 C 1.38821 * 120.14710 * 270.25183 * 3 2 1 5 5 F 1.35108 * 119.94192 * 359.97438 * 4 3 2 6 6 C 1.38264 * 120.11684 * 180.25190 * 4 3 2 7 7 C 1.38447 * 120.40758 * 359.74782 * 6 4 3 8 8 C 1.38088 * 120.29026 * 359.97438 * 7 6 4 9 9 F 1.35099 * 120.05931 * 179.97438 * 8 7 6 10 10 C 1.39986 * 119.87833 * 359.97438 * 8 7 6 11 11 C 1.47396 * 120.20398 * 179.97438 * 10 8 7 12 12 O 1.21606 * 119.99818 * 89.99857 * 11 10 8 13 13 N 1.34775 * 119.99918 * 270.00457 * 11 10 8 14 14 C 1.47021 * 125.65167 * 0.02562 * 13 11 10 15 15 C 1.54320 * 107.27383 * 178.90894 * 14 13 11 16 16 C 1.55163 * 102.94147 * 337.80980 * 15 14 13 17 17 O 1.42905 * 111.00244 * 277.42891 * 16 15 14 18 18 C 1.50698 * 111.00660 * 153.61367 * 16 15 14 19 19 H 1.08002 * 119.99847 * 3.18328 * 18 16 15 20 20 C 1.37871 * 120.00404 * 183.17791 * 18 16 15 21 21 N 1.31519 * 119.99458 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 120.00501 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46647 * 60.00278 * 22 20 18 24 24 H 1.48493 * 109.47247 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47098 * 300.00467 * 22 20 18 26 26 C 1.47524 * 125.63315 * 179.97438 * 13 11 10 27 27 H 1.08998 * 109.47188 * 300.00055 * 1 2 3 28 28 H 1.09007 * 109.47128 * 60.00098 * 1 2 3 29 29 H 1.09001 * 109.47537 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.79680 * 179.72102 * 6 4 3 31 31 H 1.08001 * 119.85518 * 179.97438 * 7 6 4 32 32 H 1.09008 * 109.87829 * 59.49076 * 14 13 11 33 33 H 1.09003 * 110.01182 * 298.40107 * 14 13 11 34 34 H 1.09002 * 110.72325 * 219.44906 * 15 14 13 35 35 H 1.08996 * 110.71901 * 96.16983 * 15 14 13 36 36 H 0.96696 * 114.00036 * 176.81949 * 17 16 15 37 37 H 0.97010 * 119.99713 * 180.02562 * 21 20 18 38 38 H 1.09004 * 110.36953 * 85.34320 * 26 13 11 39 39 H 1.09001 * 110.41107 * 322.98598 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 2.3570 1.8327 -1.2004 5 9 2.0469 1.2346 -2.3715 6 6 2.9894 3.0623 -1.1997 7 6 3.3120 3.6836 -0.0053 8 6 3.0045 3.0812 1.1985 9 9 3.3219 3.6915 2.3613 10 6 2.3632 1.8369 1.2119 11 6 2.0321 1.1870 2.4928 12 8 0.9594 1.4015 3.0239 13 7 2.9183 0.3553 3.0753 14 6 4.2453 0.0094 2.5453 15 6 4.9084 -0.9470 3.5587 16 6 4.1473 -0.6402 4.8756 17 8 4.6909 0.5109 5.5250 18 6 4.1592 -1.8326 5.7969 19 1 4.7012 -2.7245 5.5188 20 6 3.4785 -1.7851 6.9949 21 7 2.8183 -0.6992 7.3333 22 14 3.4927 -3.2635 8.1366 23 1 4.8911 -3.5711 8.5306 24 1 2.6916 -2.9600 9.3495 25 1 2.9064 -4.4348 7.4370 26 6 2.7175 -0.3579 4.3510 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.2337 3.5407 -2.1367 31 1 3.8064 4.6438 -0.0152 32 1 4.8480 0.9113 2.4376 33 1 4.1438 -0.4859 1.5797 34 1 5.9695 -0.7212 3.6650 35 1 4.7619 -1.9855 3.2617 36 1 4.2171 0.7705 6.3269 37 1 2.3396 -0.6656 8.1764 38 1 2.1837 -1.2933 4.1828 39 1 2.1719 0.2698 5.0556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847419.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:07 Heat of formation + Delta-G solvation = -173.212542 kcal Electronic energy + Delta-G solvation = -29000.426277 eV Core-core repulsion = 24545.018211 eV Total energy + Delta-G solvation = -4455.408066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.15836 -49.05726 -40.37509 -38.87387 -37.46165 -37.08528 -34.29017 -32.20426 -31.51843 -30.15393 -29.93862 -27.87992 -27.15769 -25.55444 -24.01303 -22.80062 -22.40711 -19.79144 -19.54135 -18.43458 -17.91910 -17.59194 -17.14925 -16.70626 -16.27900 -16.10139 -15.55613 -15.34447 -15.14246 -14.93127 -14.81620 -14.71860 -14.52687 -14.30491 -13.46836 -13.11173 -13.05283 -12.90720 -12.70820 -12.50896 -12.09817 -11.96412 -11.66068 -11.59033 -11.45811 -11.04317 -10.83823 -10.62465 -10.51517 -10.33746 -10.20906 -9.74072 -9.40171 -9.26189 -8.80841 -8.70413 -8.40904 -7.86726 -6.29743 -4.39567 0.46501 0.56348 2.74849 2.81864 3.20879 3.25198 3.27511 3.29459 3.50155 3.90182 3.98687 4.24972 4.32983 4.59918 4.66253 4.93931 4.99260 5.12646 5.27571 5.39741 5.44050 5.52186 5.57217 5.60636 5.66447 5.70146 5.80825 6.02577 6.13306 6.24584 6.48058 6.69930 6.81464 6.88485 7.09218 7.21194 7.31165 7.72519 7.98114 8.07266 8.49994 8.64167 9.29495 9.40094 10.77553 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019788 B = 0.003865 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.692072 B = 7243.213863 C = 7706.054088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.321 6.321 3 C 0.124 3.876 4 C 0.069 3.931 5 F -0.126 7.126 6 C -0.103 4.103 7 C -0.132 4.132 8 C 0.139 3.861 9 F -0.116 7.116 10 C -0.140 4.140 11 C 0.574 3.426 12 O -0.538 6.538 13 N -0.589 5.589 14 C 0.103 3.897 15 C -0.116 4.116 16 C 0.250 3.750 17 O -0.582 6.582 18 C -0.539 4.539 19 H 0.067 0.933 20 C 0.072 3.928 21 N -0.894 5.894 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.094 3.906 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.102 0.898 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.384 0.616 37 H 0.272 0.728 38 H 0.065 0.935 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 6.301 -16.765 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.237 6.237 3 C 0.078 3.922 4 C 0.048 3.952 5 F -0.104 7.104 6 C -0.122 4.122 7 C -0.151 4.151 8 C 0.118 3.882 9 F -0.095 7.095 10 C -0.145 4.145 11 C 0.360 3.640 12 O -0.416 6.416 13 N -0.320 5.320 14 C -0.021 4.021 15 C -0.154 4.154 16 C 0.209 3.791 17 O -0.392 6.392 18 C -0.577 4.577 19 H 0.086 0.914 20 C -0.132 4.132 21 N -0.533 5.533 22 Si 0.732 3.268 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.027 4.027 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.120 0.880 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.235 0.765 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.625 6.300 -16.839 17.990 hybrid contribution -0.609 -0.569 1.034 1.328 sum -1.234 5.731 -15.805 16.857 Atomic orbital electron populations 1.23192 0.77110 1.04259 1.01527 1.86011 1.21131 1.22631 1.93972 1.18300 0.97804 0.86813 0.89275 1.17842 1.03475 0.93021 0.80815 1.91525 1.91094 1.83172 1.44642 1.20965 0.98306 0.93268 0.99638 1.20959 1.02618 1.01953 0.89596 1.17471 0.97612 0.90641 0.82467 1.91614 1.90031 1.81737 1.46078 1.20416 1.03509 0.95211 0.95322 1.17139 0.84268 0.79399 0.83217 1.90802 1.23210 1.63221 1.64396 1.48675 1.16012 1.43037 1.24248 1.22055 0.83683 0.98909 0.97405 1.22624 0.99967 0.98094 0.94727 1.19598 0.86041 0.85035 0.88391 1.86093 1.59886 1.48415 1.44760 1.21438 1.32848 0.99997 1.03406 0.91448 1.25080 0.93760 0.96555 0.97773 1.69649 1.32351 1.27469 1.23813 0.86441 0.78297 0.82307 0.79752 1.19958 1.21070 1.19997 1.23412 1.02212 0.95304 0.81738 0.91967 0.93236 0.87987 0.82799 0.82698 0.92315 0.92250 0.90523 0.90221 0.76531 0.91843 0.91721 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.13 101.05 1.12 1.54 16 2 O -0.32 -4.99 9.73 -18.84 -0.18 -5.18 16 3 C 0.12 1.84 5.74 -38.65 -0.22 1.62 16 4 C 0.07 0.82 7.30 -39.36 -0.29 0.53 16 5 F -0.13 -1.51 17.11 2.25 0.04 -1.47 16 6 C -0.10 -0.94 10.00 -39.49 -0.40 -1.33 16 7 C -0.13 -1.32 10.00 -39.56 -0.40 -1.72 16 8 C 0.14 2.00 7.28 -38.98 -0.28 1.72 16 9 F -0.12 -1.93 16.83 2.25 0.04 -1.89 16 10 C -0.14 -2.34 4.82 -104.80 -0.51 -2.84 16 11 C 0.57 12.04 6.46 -12.53 -0.08 11.95 16 12 O -0.54 -12.86 17.12 5.27 0.09 -12.77 16 13 N -0.59 -12.62 3.33 -171.72 -0.57 -13.19 16 14 C 0.10 1.91 6.47 -3.07 -0.02 1.89 16 15 C -0.12 -2.33 6.13 -24.90 -0.15 -2.49 16 16 C 0.25 6.06 0.88 -89.63 -0.08 5.98 16 17 O -0.58 -14.94 13.17 -35.23 -0.46 -15.41 16 18 C -0.54 -13.91 8.26 -34.44 -0.28 -14.20 16 19 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 20 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 21 N -0.89 -23.76 10.69 55.43 0.59 -23.16 16 22 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 C 0.09 2.28 5.51 -2.48 -0.01 2.27 16 27 H 0.06 0.90 7.90 -51.93 -0.41 0.49 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.15 0.87 8.06 -52.48 -0.42 0.44 16 31 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 36 H 0.38 10.15 7.25 45.56 0.33 10.48 16 37 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.06 1.60 8.03 -51.93 -0.42 1.18 16 39 H 0.09 2.35 7.47 -51.93 -0.39 1.97 16 LS Contribution 345.70 15.07 5.21 5.21 Total: -1.00 -30.41 345.70 -5.76 -36.17 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -3.80 Total: 9.80 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -1.69 Total: 6.69 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.02 Total: -36.35 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.56 Total: -33.35 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.08 Total: -3.36 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.41 -5.76 -36.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847419.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.042 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds