Wall clock time and date at job start Tue Mar 31 2020 15:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35712 * 117.00329 * 2 1 4 4 C 1.38821 * 120.14710 * 270.25183 * 3 2 1 5 5 F 1.35108 * 119.94192 * 359.97438 * 4 3 2 6 6 C 1.38264 * 120.11684 * 180.25190 * 4 3 2 7 7 C 1.38447 * 120.40758 * 359.74782 * 6 4 3 8 8 C 1.38088 * 120.29026 * 359.97438 * 7 6 4 9 9 F 1.35099 * 120.05931 * 179.97438 * 8 7 6 10 10 C 1.39986 * 119.87833 * 359.97438 * 8 7 6 11 11 C 1.47396 * 120.20398 * 179.97438 * 10 8 7 12 12 O 1.21606 * 119.99818 * 89.99857 * 11 10 8 13 13 N 1.34775 * 119.99918 * 270.00457 * 11 10 8 14 14 C 1.47021 * 125.65167 * 0.02562 * 13 11 10 15 15 C 1.54320 * 107.27383 * 178.90894 * 14 13 11 16 16 C 1.55163 * 102.94147 * 337.80980 * 15 14 13 17 17 O 1.42905 * 111.00244 * 277.42891 * 16 15 14 18 18 C 1.50698 * 111.00660 * 153.61367 * 16 15 14 19 19 H 1.08002 * 119.99847 * 3.18328 * 18 16 15 20 20 C 1.37871 * 120.00404 * 183.17791 * 18 16 15 21 21 N 1.31519 * 119.99458 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 120.00501 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46647 * 60.00278 * 22 20 18 24 24 H 1.48493 * 109.47247 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47098 * 300.00467 * 22 20 18 26 26 C 1.47524 * 125.63315 * 179.97438 * 13 11 10 27 27 H 1.08998 * 109.47188 * 300.00055 * 1 2 3 28 28 H 1.09007 * 109.47128 * 60.00098 * 1 2 3 29 29 H 1.09001 * 109.47537 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.79680 * 179.72102 * 6 4 3 31 31 H 1.08001 * 119.85518 * 179.97438 * 7 6 4 32 32 H 1.09008 * 109.87829 * 59.49076 * 14 13 11 33 33 H 1.09003 * 110.01182 * 298.40107 * 14 13 11 34 34 H 1.09002 * 110.72325 * 219.44906 * 15 14 13 35 35 H 1.08996 * 110.71901 * 96.16983 * 15 14 13 36 36 H 0.96696 * 114.00036 * 176.81949 * 17 16 15 37 37 H 0.97010 * 119.99713 * 180.02562 * 21 20 18 38 38 H 1.09004 * 110.36953 * 85.34320 * 26 13 11 39 39 H 1.09001 * 110.41107 * 322.98598 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 2.3570 1.8327 -1.2004 5 9 2.0469 1.2346 -2.3715 6 6 2.9894 3.0623 -1.1997 7 6 3.3120 3.6836 -0.0053 8 6 3.0045 3.0812 1.1985 9 9 3.3219 3.6915 2.3613 10 6 2.3632 1.8369 1.2119 11 6 2.0321 1.1870 2.4928 12 8 0.9594 1.4015 3.0239 13 7 2.9183 0.3553 3.0753 14 6 4.2453 0.0094 2.5453 15 6 4.9084 -0.9470 3.5587 16 6 4.1473 -0.6402 4.8756 17 8 4.6909 0.5109 5.5250 18 6 4.1592 -1.8326 5.7969 19 1 4.7012 -2.7245 5.5188 20 6 3.4785 -1.7851 6.9949 21 7 2.8183 -0.6992 7.3333 22 14 3.4927 -3.2635 8.1366 23 1 4.8911 -3.5711 8.5306 24 1 2.6916 -2.9600 9.3495 25 1 2.9064 -4.4348 7.4370 26 6 2.7175 -0.3579 4.3510 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.2337 3.5407 -2.1367 31 1 3.8064 4.6438 -0.0152 32 1 4.8480 0.9113 2.4376 33 1 4.1438 -0.4859 1.5797 34 1 5.9695 -0.7212 3.6650 35 1 4.7619 -1.9855 3.2617 36 1 4.2171 0.7705 6.3269 37 1 2.3396 -0.6656 8.1764 38 1 2.1837 -1.2933 4.1828 39 1 2.1719 0.2698 5.0556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847419.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:06 Heat of formation + Delta-G solvation = -194.784288 kcal Electronic energy + Delta-G solvation = -29001.361698 eV Core-core repulsion = 24545.018211 eV Total energy + Delta-G solvation = -4456.343487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.21739 -50.07559 -41.68554 -40.33862 -38.91517 -38.39269 -36.15327 -34.22558 -32.77253 -31.58570 -31.06564 -29.67440 -28.20252 -27.30740 -25.41598 -23.92321 -23.77493 -21.56618 -21.02137 -19.54588 -19.23000 -18.97994 -18.76426 -17.94530 -17.42606 -17.29378 -17.12655 -16.67978 -16.57124 -16.47771 -16.15050 -16.07921 -15.71950 -15.50439 -14.94749 -14.77656 -14.73176 -14.20501 -13.90775 -13.82009 -13.53498 -13.36812 -13.33068 -12.98511 -12.84262 -12.62804 -12.58264 -12.36438 -12.30166 -12.16460 -11.49920 -11.30627 -11.20183 -10.67916 -10.40957 -10.28157 -9.79140 -9.64733 -8.27517 -6.45203 -0.52273 -0.40051 1.24207 1.43415 1.43522 1.52215 1.75802 1.95990 2.34462 2.37502 2.87656 2.95799 2.98429 3.22638 3.58910 3.70630 3.73830 3.94782 4.04462 4.13178 4.20399 4.24518 4.27849 4.49111 4.55830 4.58782 4.62474 4.65972 4.73390 4.84800 4.93433 5.00477 5.16860 5.30569 5.35541 5.39954 5.72149 6.01034 6.05255 6.41709 6.62809 6.85880 7.25474 7.32853 8.78193 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019788 B = 0.003865 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.692072 B = 7243.213863 C = 7706.054088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.343 6.343 3 C 0.109 3.891 4 C 0.073 3.927 5 F -0.123 7.123 6 C -0.070 4.070 7 C -0.105 4.105 8 C 0.117 3.883 9 F -0.137 7.137 10 C -0.168 4.168 11 C 0.571 3.429 12 O -0.583 6.583 13 N -0.597 5.597 14 C 0.108 3.892 15 C -0.110 4.110 16 C 0.235 3.765 17 O -0.588 6.588 18 C -0.558 4.558 19 H 0.072 0.928 20 C 0.027 3.973 21 N -0.918 5.918 22 Si 0.967 3.033 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.269 1.269 26 C 0.107 3.893 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.206 0.794 31 H 0.198 0.802 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.375 0.625 37 H 0.271 0.729 38 H 0.049 0.951 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.128 6.878 -19.877 21.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.259 6.259 3 C 0.063 3.937 4 C 0.052 3.948 5 F -0.102 7.102 6 C -0.088 4.088 7 C -0.124 4.124 8 C 0.097 3.903 9 F -0.116 7.116 10 C -0.173 4.173 11 C 0.359 3.641 12 O -0.465 6.465 13 N -0.327 5.327 14 C -0.014 4.014 15 C -0.147 4.147 16 C 0.195 3.805 17 O -0.396 6.396 18 C -0.596 4.596 19 H 0.090 0.910 20 C -0.174 4.174 21 N -0.557 5.557 22 Si 0.792 3.208 23 H -0.193 1.193 24 H -0.211 1.211 25 H -0.194 1.194 26 C -0.015 4.015 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.136 0.864 30 H 0.222 0.778 31 H 0.215 0.785 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.225 0.775 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.917 6.874 -19.990 21.159 hybrid contribution -1.108 -0.701 1.918 2.323 sum -0.191 6.173 -18.072 19.098 Atomic orbital electron populations 1.23294 0.76245 1.05348 1.01279 1.85965 1.22201 1.23667 1.94106 1.18453 0.98493 0.86949 0.89773 1.17919 1.03408 0.93697 0.79731 1.91540 1.91105 1.83374 1.44158 1.21519 0.94792 0.91284 1.01217 1.21404 1.00592 1.02764 0.87608 1.17893 0.98706 0.90283 0.83401 1.91562 1.90390 1.81958 1.47652 1.20100 1.07060 0.96727 0.93414 1.17861 0.83286 0.78554 0.84421 1.90750 1.25073 1.64528 1.66143 1.48752 1.17320 1.43182 1.23412 1.22141 0.82163 0.99272 0.97809 1.22632 1.00291 0.99271 0.92545 1.19828 0.86655 0.84176 0.89846 1.86081 1.59922 1.49180 1.44441 1.21776 1.33014 1.00692 1.04095 0.90977 1.25851 0.93347 0.98971 0.99243 1.69778 1.32830 1.29113 1.24024 0.85468 0.78398 0.79223 0.77726 1.19285 1.21113 1.19430 1.22969 1.01855 0.93992 0.82688 0.94729 0.90850 0.86357 0.77754 0.78500 0.91229 0.89692 0.89220 0.88935 0.77505 0.92017 0.93273 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.13 113.37 1.26 2.07 16 2 O -0.34 -10.56 9.73 -90.34 -0.88 -11.44 16 3 C 0.11 3.11 5.74 22.87 0.13 3.24 16 4 C 0.07 1.48 7.30 22.42 0.16 1.65 16 5 F -0.12 -2.50 17.11 44.97 0.77 -1.74 16 6 C -0.07 -0.88 10.00 22.33 0.22 -0.66 16 7 C -0.11 -1.62 10.00 22.28 0.22 -1.39 16 8 C 0.12 3.22 7.28 22.66 0.17 3.39 16 9 F -0.14 -4.54 16.83 44.97 0.76 -3.78 16 10 C -0.17 -5.60 4.82 -19.98 -0.10 -5.70 16 11 C 0.57 25.02 6.46 86.65 0.56 25.58 16 12 O -0.58 -29.93 17.12 -4.05 -0.07 -30.00 16 13 N -0.60 -26.47 3.33 -815.45 -2.71 -29.19 16 14 C 0.11 3.96 6.47 86.73 0.56 4.53 16 15 C -0.11 -4.34 6.13 31.78 0.19 -4.14 16 16 C 0.24 11.69 0.88 -10.15 -0.01 11.68 16 17 O -0.59 -31.16 13.17 -148.98 -1.96 -33.12 16 18 C -0.56 -29.29 8.26 25.60 0.21 -29.08 16 19 H 0.07 3.63 7.78 -2.91 -0.02 3.60 16 20 C 0.03 1.41 5.29 84.65 0.45 1.85 16 21 N -0.92 -50.77 10.69 21.45 0.23 -50.54 16 22 Si 0.97 41.93 29.54 68.60 2.03 43.95 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 26 C 0.11 5.50 5.51 86.83 0.48 5.97 16 27 H 0.03 1.06 7.90 -2.39 -0.02 1.04 16 28 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.21 0.65 8.06 -2.91 -0.02 0.63 16 31 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 35 H 0.09 3.39 8.03 -2.39 -0.02 3.37 16 36 H 0.38 20.90 7.25 -74.06 -0.54 20.37 16 37 H 0.27 14.36 8.31 -92.70 -0.77 13.59 16 38 H 0.05 2.59 8.03 -2.38 -0.02 2.57 16 39 H 0.05 2.73 7.47 -2.39 -0.02 2.71 16 Total: -1.00 -71.40 345.70 3.24 -68.16 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.57 Total: 28.71 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: 4.52 Total: 18.98 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -2.49 Total: -79.73 kcal Atomic # 8 Polarization: -71.65 SS G_CDS: -2.91 Total: -74.56 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 1.53 Total: -5.52 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -71.40 3.24 -68.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847419.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.627 kcal (2) G-P(sol) polarization free energy of solvation -71.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds