Wall clock time and date at job start Tue Mar 31 2020 15:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47240 * 2 1 4 4 C 1.46501 * 119.99942 * 270.00090 * 3 2 1 5 5 C 1.50701 * 109.47057 * 269.99892 * 4 3 2 6 6 H 1.07993 * 120.00032 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99802 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99890 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00303 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47253 * 89.99622 * 9 7 5 11 11 H 1.48500 * 109.47366 * 210.00119 * 9 7 5 12 12 H 1.48510 * 109.46853 * 330.00308 * 9 7 5 13 13 C 1.34779 * 120.00014 * 89.99918 * 3 2 1 14 14 O 1.21276 * 120.00071 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99809 * 0.02562 * 13 3 2 16 16 C 1.50695 * 109.47156 * 179.97438 * 15 13 3 17 17 C 1.38255 * 119.93027 * 270.28521 * 16 15 13 18 18 C 1.38236 * 120.14013 * 180.31603 * 17 16 15 19 19 C 1.38550 * 120.03045 * 359.43186 * 18 17 16 20 20 C 1.39270 * 119.82844 * 0.25810 * 19 18 17 21 21 C 1.38241 * 119.92458 * 89.99522 * 16 15 13 22 22 O 1.36493 * 108.63816 * 180.02562 * 20 19 18 23 23 C 1.43989 * 105.48811 * 342.71681 * 22 20 19 24 24 F 1.39891 * 110.57460 * 268.55486 * 23 22 20 25 25 F 1.39901 * 110.69635 * 145.74191 * 23 22 20 26 26 O 1.36503 * 131.53076 * 180.29915 * 19 18 17 27 27 H 1.09001 * 109.47231 * 300.00191 * 1 2 3 28 28 H 1.09003 * 109.47329 * 59.99905 * 1 2 3 29 29 H 1.09004 * 109.47485 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46715 * 239.99912 * 2 1 3 31 31 H 1.08997 * 109.46925 * 120.00199 * 2 1 3 32 32 H 1.08994 * 109.47410 * 30.00106 * 4 3 2 33 33 H 1.08997 * 109.46771 * 150.00029 * 4 3 2 34 34 H 0.97003 * 120.00282 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.47039 * 59.99399 * 15 13 3 36 36 H 1.08998 * 109.46784 * 299.99623 * 15 13 3 37 37 H 1.07993 * 119.92847 * 0.02562 * 17 16 15 38 38 H 1.08002 * 119.98667 * 179.71714 * 18 17 16 39 39 H 1.08001 * 119.98709 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 5.3913 2.1834 -3.2574 9 14 3.0135 3.4371 -3.9280 10 1 3.1173 4.8570 -3.5057 11 1 3.4065 3.3150 -5.3549 12 1 1.6136 2.9714 -3.7585 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9923 1.3059 2.4723 16 6 2.3192 2.2289 3.6178 17 6 3.6000 2.2563 4.1377 18 6 3.9030 3.0967 5.1927 19 6 2.9257 3.9226 5.7241 20 6 1.6372 3.8997 5.1961 21 6 1.3393 3.0508 4.1424 22 8 0.8682 4.7938 5.8833 23 6 1.5891 5.0659 7.0997 24 9 1.1888 4.1906 8.1147 25 9 1.4046 6.3946 7.4971 26 8 2.9641 4.8313 6.7420 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6878 -2.0284 33 1 2.0956 3.1410 -1.1383 34 1 5.7176 2.5745 -4.0829 35 1 2.6228 0.4186 2.5298 36 1 0.9445 1.0114 2.5302 37 1 4.3641 1.6165 3.7218 38 1 4.9032 3.1127 5.5999 39 1 0.3409 3.0310 3.7310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593417194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:59 Heat of formation + Delta-G solvation = -170.061921 kcal Electronic energy + Delta-G solvation = -27611.454368 eV Core-core repulsion = 23156.182923 eV Total energy + Delta-G solvation = -4455.271445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.72587 -48.18566 -42.42415 -39.61864 -37.98295 -37.18705 -35.44999 -32.93048 -32.21439 -30.70740 -30.38075 -28.47341 -26.84190 -25.35704 -23.48951 -23.20814 -23.02209 -21.91192 -19.48797 -19.10745 -19.01377 -18.37427 -17.56253 -16.97765 -16.59130 -16.12765 -15.98163 -15.40667 -15.15726 -14.89678 -14.71903 -14.45519 -14.34750 -14.29596 -14.11934 -14.08486 -13.64426 -13.55172 -13.39650 -13.32863 -12.62076 -12.49662 -12.18658 -12.08990 -11.77992 -11.75154 -11.52245 -11.26637 -11.01500 -10.76139 -10.53137 -10.19322 -9.58747 -9.25370 -9.06429 -8.62215 -8.55034 -7.79804 -6.12324 -4.11250 0.74715 0.94692 1.42813 2.00009 3.18949 3.24317 3.27000 3.32661 3.35087 3.62278 3.76041 3.81693 4.03588 4.36556 4.50192 4.56098 4.67087 4.95535 4.97904 5.07848 5.19570 5.22571 5.29557 5.46332 5.49200 5.62952 5.68079 5.74195 5.84637 5.92871 5.98088 6.09194 6.28049 6.33524 6.59927 6.67114 6.90416 7.27362 7.57268 8.16800 8.42477 8.86052 8.92114 9.48057 11.00971 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018209 B = 0.002895 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.300480 B = 9668.652742 C =10157.561084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 N -0.592 5.592 4 C 0.217 3.783 5 C -0.529 4.529 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.508 3.492 14 O -0.531 6.531 15 C -0.104 4.104 16 C -0.035 4.035 17 C -0.081 4.081 18 C -0.078 4.078 19 C 0.018 3.982 20 C 0.025 3.975 21 C -0.068 4.068 22 O -0.287 6.287 23 C 0.569 3.431 24 F -0.157 7.157 25 F -0.120 7.120 26 O -0.288 6.288 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.036 0.964 34 H 0.265 0.735 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.635 -3.470 18.494 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.324 5.324 4 C 0.096 3.904 5 C -0.568 4.568 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.408 6.408 15 C -0.144 4.144 16 C -0.036 4.036 17 C -0.099 4.099 18 C -0.096 4.096 19 C -0.026 4.026 20 C -0.019 4.019 21 C -0.087 4.087 22 O -0.207 6.207 23 C 0.460 3.540 24 F -0.139 7.139 25 F -0.101 7.101 26 O -0.208 6.208 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.165 0.835 38 H 0.162 0.838 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.338 -2.577 18.428 20.819 hybrid contribution -0.606 0.869 -0.330 1.110 sum -9.944 -1.708 18.098 20.720 Atomic orbital electron populations 1.22246 0.96742 1.01674 1.02266 1.21475 0.93413 0.83783 1.03273 1.47944 1.64076 1.13421 1.06940 1.19652 0.97342 0.93382 0.80018 1.21311 0.95320 1.32958 1.07165 0.90732 1.24852 0.94982 0.95780 0.97363 1.69890 1.15126 1.44923 1.23602 0.86866 0.81450 0.81660 0.79801 1.19909 1.21061 1.19078 1.20097 0.78785 0.87000 0.84696 1.90718 1.45082 1.17970 1.87037 1.20805 1.04454 0.98240 0.90913 1.19202 0.92812 0.96349 0.95225 1.20961 0.96316 0.98438 0.94230 1.20082 0.98416 0.93838 0.97274 1.19546 0.95709 0.94802 0.92514 1.19422 0.88541 0.94866 0.99058 1.19895 1.01283 0.93307 0.94180 1.87611 1.44687 1.59017 1.29359 1.21899 0.77862 0.75290 0.78948 1.93254 1.90100 1.69484 1.61089 1.93239 1.94314 1.32171 1.90350 1.87608 1.23938 1.58303 1.50913 0.92948 0.92214 0.91893 0.89636 0.91230 0.95246 0.94612 0.92535 0.87424 0.87921 0.83486 0.83796 0.84083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 10.24 37.16 0.38 -1.49 16 2 C 0.10 1.42 5.93 -4.04 -0.02 1.39 16 3 N -0.59 -11.06 2.46 -175.06 -0.43 -11.49 16 4 C 0.22 5.05 4.23 -5.19 -0.02 5.03 16 5 C -0.53 -14.67 9.94 -34.44 -0.34 -15.01 16 6 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 9 Si 0.88 21.20 27.47 -169.99 -4.67 16.54 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 13 C 0.51 9.24 7.67 -10.98 -0.08 9.16 16 14 O -0.53 -12.23 15.61 5.56 0.09 -12.14 16 15 C -0.10 -1.24 4.38 -29.03 -0.13 -1.37 16 16 C -0.04 -0.44 4.37 -104.62 -0.46 -0.90 16 17 C -0.08 -0.95 9.69 -39.58 -0.38 -1.34 16 18 C -0.08 -0.90 10.06 -39.47 -0.40 -1.29 16 19 C 0.02 0.23 7.15 -39.08 -0.28 -0.04 16 20 C 0.02 0.34 7.15 -39.08 -0.28 0.06 16 21 C -0.07 -0.86 9.71 -39.47 -0.38 -1.25 16 22 O -0.29 -3.94 11.35 -45.67 -0.52 -4.46 16 23 C 0.57 7.16 3.69 101.05 0.37 7.53 16 24 F -0.16 -1.85 17.57 2.25 0.04 -1.81 16 25 F -0.12 -1.43 17.57 2.25 0.04 -1.39 16 26 O -0.29 -3.86 11.35 -45.70 -0.52 -4.38 16 27 H 0.05 0.52 7.22 -51.93 -0.38 0.14 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.25 8.07 -51.93 -0.42 0.83 16 31 H 0.07 0.74 6.44 -51.93 -0.33 0.40 16 32 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 33 H 0.04 0.90 6.85 -51.93 -0.36 0.55 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.11 1.03 7.35 -51.93 -0.38 0.65 16 36 H 0.10 0.93 7.13 -51.93 -0.37 0.56 16 37 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -33.91 344.77 -6.43 -40.35 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -4.31 Total: -2.50 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.12 Total: 2.46 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.34 Total: -37.87 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.95 Total: -20.97 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.08 Total: -3.20 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.91 -6.43 -40.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593417194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.715 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds