Wall clock time and date at job start Tue Mar 31 2020 15:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47240 * 2 1 4 4 C 1.46501 * 119.99942 * 270.00090 * 3 2 1 5 5 C 1.50701 * 109.47057 * 269.99892 * 4 3 2 6 6 H 1.07993 * 120.00032 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99802 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99890 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00303 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47253 * 89.99622 * 9 7 5 11 11 H 1.48500 * 109.47366 * 210.00119 * 9 7 5 12 12 H 1.48510 * 109.46853 * 330.00308 * 9 7 5 13 13 C 1.34779 * 120.00014 * 89.99918 * 3 2 1 14 14 O 1.21276 * 120.00071 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99809 * 0.02562 * 13 3 2 16 16 C 1.50695 * 109.47156 * 179.97438 * 15 13 3 17 17 C 1.38255 * 119.93027 * 270.28521 * 16 15 13 18 18 C 1.38236 * 120.14013 * 180.31603 * 17 16 15 19 19 C 1.38550 * 120.03045 * 359.43186 * 18 17 16 20 20 C 1.39270 * 119.82844 * 0.25810 * 19 18 17 21 21 C 1.38241 * 119.92458 * 89.99522 * 16 15 13 22 22 O 1.36493 * 108.63816 * 180.02562 * 20 19 18 23 23 C 1.43989 * 105.48811 * 342.71681 * 22 20 19 24 24 F 1.39891 * 110.57460 * 268.55486 * 23 22 20 25 25 F 1.39901 * 110.69635 * 145.74191 * 23 22 20 26 26 O 1.36503 * 131.53076 * 180.29915 * 19 18 17 27 27 H 1.09001 * 109.47231 * 300.00191 * 1 2 3 28 28 H 1.09003 * 109.47329 * 59.99905 * 1 2 3 29 29 H 1.09004 * 109.47485 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46715 * 239.99912 * 2 1 3 31 31 H 1.08997 * 109.46925 * 120.00199 * 2 1 3 32 32 H 1.08994 * 109.47410 * 30.00106 * 4 3 2 33 33 H 1.08997 * 109.46771 * 150.00029 * 4 3 2 34 34 H 0.97003 * 120.00282 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.47039 * 59.99399 * 15 13 3 36 36 H 1.08998 * 109.46784 * 299.99623 * 15 13 3 37 37 H 1.07993 * 119.92847 * 0.02562 * 17 16 15 38 38 H 1.08002 * 119.98667 * 179.71714 * 18 17 16 39 39 H 1.08001 * 119.98709 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 5.3913 2.1834 -3.2574 9 14 3.0135 3.4371 -3.9280 10 1 3.1173 4.8570 -3.5057 11 1 3.4065 3.3150 -5.3549 12 1 1.6136 2.9714 -3.7585 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9923 1.3059 2.4723 16 6 2.3192 2.2289 3.6178 17 6 3.6000 2.2563 4.1377 18 6 3.9030 3.0967 5.1927 19 6 2.9257 3.9226 5.7241 20 6 1.6372 3.8997 5.1961 21 6 1.3393 3.0508 4.1424 22 8 0.8682 4.7938 5.8833 23 6 1.5891 5.0659 7.0997 24 9 1.1888 4.1906 8.1147 25 9 1.4046 6.3946 7.4971 26 8 2.9641 4.8313 6.7420 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6878 -2.0284 33 1 2.0956 3.1410 -1.1383 34 1 5.7176 2.5745 -4.0829 35 1 2.6228 0.4186 2.5298 36 1 0.9445 1.0114 2.5302 37 1 4.3641 1.6165 3.7218 38 1 4.9032 3.1127 5.5999 39 1 0.3409 3.0310 3.7310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593417194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:59 Heat of formation + Delta-G solvation = -192.031881 kcal Electronic energy + Delta-G solvation = -27612.407057 eV Core-core repulsion = 23156.182923 eV Total energy + Delta-G solvation = -4456.224134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.68986 -49.14483 -43.39810 -40.92673 -39.04641 -38.19002 -36.90016 -34.86426 -33.39989 -31.80004 -31.58720 -29.89149 -28.17913 -26.36133 -24.68967 -24.38859 -24.19827 -23.24546 -20.46771 -20.24374 -19.98972 -19.56446 -19.06943 -18.56432 -17.90908 -17.25111 -17.07351 -16.70231 -16.30536 -16.06241 -15.86019 -15.66700 -15.45186 -15.35335 -15.20229 -15.08676 -14.79157 -14.67596 -14.61695 -14.40409 -14.38418 -13.81129 -13.41018 -13.27078 -13.06387 -12.93146 -12.78198 -12.49105 -12.38622 -12.16365 -12.00929 -11.78461 -11.70832 -10.81074 -10.66598 -10.04627 -9.55665 -9.34904 -8.31927 -6.35628 -0.23013 0.02356 0.45389 1.03140 1.33124 1.37076 1.44615 1.87620 2.16400 2.31956 2.56801 2.65746 2.78838 3.03137 3.10068 3.53555 3.59281 3.78498 3.87255 4.08060 4.17327 4.24723 4.42701 4.51879 4.60504 4.71876 4.77203 4.83167 4.87601 4.90053 5.00548 5.06655 5.09102 5.10429 5.35638 5.46883 5.51934 5.68596 5.71513 6.27198 6.66329 6.78839 7.25479 7.49662 8.84705 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018209 B = 0.002895 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.300480 B = 9668.652742 C =10157.561084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.600 5.600 4 C 0.225 3.775 5 C -0.531 4.531 6 H 0.035 0.965 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.942 3.058 10 H -0.280 1.280 11 H -0.277 1.277 12 H -0.239 1.239 13 C 0.499 3.501 14 O -0.591 6.591 15 C -0.089 4.089 16 C -0.046 4.046 17 C -0.084 4.084 18 C -0.077 4.077 19 C 0.001 3.999 20 C 0.004 3.996 21 C -0.072 4.072 22 O -0.297 6.297 23 C 0.571 3.429 24 F -0.152 7.152 25 F -0.118 7.118 26 O -0.296 6.296 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.045 0.955 33 H 0.015 0.985 34 H 0.267 0.733 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.165 0.835 38 H 0.168 0.832 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.545 -4.800 19.109 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.026 4.026 3 N -0.331 5.331 4 C 0.103 3.897 5 C -0.569 4.569 6 H 0.053 0.947 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.765 3.235 10 H -0.205 1.205 11 H -0.202 1.202 12 H -0.162 1.162 13 C 0.289 3.711 14 O -0.471 6.471 15 C -0.128 4.128 16 C -0.046 4.046 17 C -0.102 4.102 18 C -0.095 4.095 19 C -0.042 4.042 20 C -0.039 4.039 21 C -0.090 4.090 22 O -0.217 6.217 23 C 0.462 3.538 24 F -0.134 7.134 25 F -0.099 7.099 26 O -0.216 6.216 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.182 0.818 38 H 0.185 0.815 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.286 -3.966 19.065 22.507 hybrid contribution 0.065 1.228 -0.457 1.312 sum -11.221 -2.738 18.608 21.901 Atomic orbital electron populations 1.22188 0.94214 1.03616 1.02134 1.21829 0.95432 0.80952 1.04378 1.48059 1.64147 1.15284 1.05626 1.19252 0.94690 0.92921 0.82882 1.21587 0.97113 1.31716 1.06508 0.94713 1.25791 0.96555 0.97253 0.99045 1.70038 1.17317 1.46680 1.24508 0.85804 0.80687 0.79068 0.77935 1.20546 1.20200 1.16167 1.21182 0.77101 0.86542 0.86317 1.90689 1.47626 1.20767 1.88038 1.20817 1.07495 0.98040 0.86444 1.19379 0.93111 0.96688 0.95472 1.21290 0.96593 0.98407 0.93947 1.20408 0.99163 0.93025 0.96936 1.19858 0.96226 0.95309 0.92784 1.19677 0.88852 0.95537 0.99817 1.20149 1.02237 0.92876 0.93739 1.87578 1.45043 1.59308 1.29776 1.21853 0.77655 0.75416 0.78865 1.93258 1.90025 1.69344 1.60796 1.93241 1.94287 1.32041 1.90299 1.87580 1.24318 1.58570 1.51099 0.91422 0.94051 0.88863 0.91287 0.87508 0.93707 0.96728 0.92401 0.84335 0.84156 0.81764 0.81488 0.82564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 10.24 71.98 0.74 -2.19 16 2 C 0.10 2.33 5.93 86.38 0.51 2.84 16 3 N -0.60 -21.60 2.46 -826.16 -2.03 -23.63 16 4 C 0.23 10.44 4.23 85.63 0.36 10.80 16 5 C -0.53 -30.07 9.94 25.60 0.25 -29.82 16 6 H 0.03 2.18 8.06 -2.91 -0.02 2.15 16 7 C 0.01 0.67 5.47 84.65 0.46 1.13 16 8 N -0.95 -58.75 13.96 21.45 0.30 -58.45 16 9 Si 0.94 43.91 27.47 68.60 1.88 45.79 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 13 C 0.50 17.43 7.67 87.66 0.67 18.10 16 14 O -0.59 -27.29 15.61 -3.02 -0.05 -27.33 16 15 C -0.09 -1.80 4.38 29.10 0.13 -1.68 16 16 C -0.05 -1.04 4.37 -19.86 -0.09 -1.13 16 17 C -0.08 -1.82 9.69 22.27 0.22 -1.60 16 18 C -0.08 -1.67 10.06 22.34 0.22 -1.45 16 19 C 0.00 0.04 7.15 22.59 0.16 0.20 16 20 C 0.00 0.12 7.15 22.59 0.16 0.28 16 21 C -0.07 -1.70 9.71 22.34 0.22 -1.48 16 22 O -0.30 -8.05 11.35 -75.97 -0.86 -8.92 16 23 C 0.57 14.15 3.69 113.37 0.42 14.57 16 24 F -0.15 -3.48 17.57 44.97 0.79 -2.69 16 25 F -0.12 -2.77 17.57 44.97 0.79 -1.98 16 26 O -0.30 -7.81 11.35 -76.09 -0.86 -8.67 16 27 H 0.07 1.02 7.22 -2.39 -0.02 1.00 16 28 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 1.14 8.14 -2.38 -0.02 1.13 16 30 H 0.07 1.90 8.07 -2.39 -0.02 1.88 16 31 H 0.11 1.78 6.44 -2.39 -0.02 1.77 16 32 H 0.05 1.93 7.13 -2.39 -0.02 1.92 16 33 H 0.01 0.74 6.85 -2.39 -0.02 0.73 16 34 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.14 1.99 7.35 -2.38 -0.02 1.97 16 36 H 0.14 1.82 7.13 -2.39 -0.02 1.80 16 37 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 39 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -77.80 344.77 5.44 -72.36 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 1.04 Total: 4.96 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 4.44 Total: 8.56 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -1.73 Total: -82.08 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -1.77 Total: -44.92 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 1.58 Total: -4.67 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Total: -77.80 5.44 -72.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593417194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.673 kcal (2) G-P(sol) polarization free energy of solvation -77.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds