Wall clock time and date at job start Tue Mar 31 2020 15:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47312 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46948 * 119.99892 * 8 6 4 11 11 H 1.48500 * 109.46809 * 239.99811 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.46499 * 120.00271 * 300.00476 * 12 2 1 14 14 C 1.34783 * 119.99826 * 120.00322 * 12 2 1 15 15 O 1.21278 * 120.00109 * 359.97438 * 14 12 2 16 16 C 1.50703 * 120.00065 * 180.02562 * 14 12 2 17 17 C 1.50697 * 109.47239 * 179.97438 * 16 14 12 18 18 C 1.38247 * 119.92972 * 89.99726 * 17 16 14 19 19 C 1.38238 * 120.14723 * 179.97438 * 18 17 16 20 20 C 1.38548 * 120.02531 * 359.97438 * 19 18 17 21 21 C 1.39270 * 119.83046 * 0.03116 * 20 19 18 22 22 C 1.38239 * 119.92648 * 269.72764 * 17 16 14 23 23 O 1.36492 * 108.64193 * 179.97438 * 21 20 19 24 24 C 1.43983 * 105.48704 * 342.71659 * 23 21 20 25 25 F 1.39899 * 110.57257 * 268.55807 * 24 23 21 26 26 F 1.39898 * 110.70402 * 145.74333 * 24 23 21 27 27 O 1.36502 * 131.53313 * 180.02562 * 20 19 18 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47057 * 89.99771 * 13 12 2 33 33 H 1.09006 * 109.46711 * 209.99932 * 13 12 2 34 34 H 1.08998 * 109.46853 * 329.99725 * 13 12 2 35 35 H 1.08999 * 109.46819 * 299.99778 * 16 14 12 36 36 H 1.08998 * 109.47107 * 59.99963 * 16 14 12 37 37 H 1.08005 * 119.92728 * 0.02562 * 18 17 16 38 38 H 1.07997 * 119.99234 * 180.02562 * 19 18 17 39 39 H 1.07998 * 119.98526 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1454 -2.2877 3.6038 10 1 3.1467 -0.1874 4.8165 11 1 1.1660 -1.5866 4.8160 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0834 15 8 3.0859 1.1255 -1.8917 16 6 3.2950 -0.7460 -3.3141 17 6 4.1318 0.2013 -4.1347 18 6 5.4934 0.2890 -3.9117 19 6 6.2654 1.1560 -4.6621 20 6 5.6755 1.9394 -5.6409 21 6 4.3039 1.8512 -5.8655 22 6 3.5372 0.9766 -5.1126 23 8 3.9698 2.7139 -6.8691 24 6 5.0787 3.6259 -6.9772 25 9 4.8737 4.7474 -6.1665 26 9 5.2737 4.0118 -8.3077 27 8 6.2008 2.8572 -6.5041 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.7090 1.1614 3.4844 32 1 0.7374 -2.1443 -1.9993 33 1 2.4628 -2.5819 -1.9864 34 1 1.5294 -2.5969 -0.4708 35 1 3.9004 -1.6026 -3.0178 36 1 2.4470 -1.0881 -3.9073 37 1 5.9551 -0.3219 -3.1500 38 1 7.3289 1.2223 -4.4861 39 1 2.4742 0.9025 -5.2880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593453787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:33 Heat of formation + Delta-G solvation = -169.984787 kcal Electronic energy + Delta-G solvation = -27629.185421 eV Core-core repulsion = 23173.917321 eV Total energy + Delta-G solvation = -4455.268100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.68028 -48.13379 -42.40722 -39.52362 -37.95539 -37.16915 -35.35913 -33.05200 -32.20392 -30.70443 -29.55950 -27.29120 -26.10316 -25.34485 -25.24044 -23.46942 -22.97840 -21.10889 -19.43282 -19.02909 -18.99393 -18.34151 -17.53232 -16.69859 -16.29875 -16.04757 -15.84177 -15.36476 -15.06520 -14.86169 -14.72309 -14.48640 -14.37678 -14.27199 -14.11851 -14.07768 -13.74726 -13.37707 -13.00276 -12.68671 -12.50619 -12.34305 -11.90156 -11.79623 -11.58437 -11.51153 -11.35066 -11.08777 -10.86373 -10.72575 -10.28331 -10.21564 -9.27368 -9.16896 -9.01550 -8.54306 -8.45965 -7.65457 -6.11454 -4.19802 0.75773 0.93814 1.46787 2.00766 3.22664 3.25838 3.27965 3.31701 3.34165 3.65833 3.80059 3.95193 4.02454 4.35909 4.52775 4.57686 4.66978 4.96293 5.09738 5.15193 5.20769 5.34141 5.47280 5.62614 5.70810 5.77335 5.87692 5.96849 5.97193 6.28625 6.31443 6.61523 6.71527 6.79110 7.02177 7.36029 7.49004 7.67301 7.97072 8.15379 8.46294 8.78252 8.98170 9.46956 10.93876 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.022500 B = 0.002653 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.139832 B =10553.221850 C =10659.846434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.592 5.592 13 C 0.081 3.919 14 C 0.503 3.497 15 O -0.544 6.544 16 C -0.104 4.104 17 C -0.033 4.033 18 C -0.084 4.084 19 C -0.078 4.078 20 C 0.016 3.984 21 C 0.026 3.974 22 C -0.068 4.068 23 O -0.288 6.288 24 C 0.569 3.431 25 F -0.153 7.153 26 F -0.121 7.121 27 O -0.289 6.289 28 H 0.029 0.971 29 H 0.093 0.907 30 H 0.010 0.990 31 H 0.263 0.737 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.903 -3.217 -17.379 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.324 5.324 13 C -0.063 4.063 14 C 0.289 3.711 15 O -0.423 6.423 16 C -0.144 4.144 17 C -0.033 4.033 18 C -0.102 4.102 19 C -0.096 4.096 20 C -0.027 4.027 21 C -0.018 4.018 22 C -0.086 4.086 23 O -0.208 6.208 24 C 0.461 3.539 25 F -0.135 7.135 26 F -0.102 7.102 27 O -0.209 6.209 28 H 0.049 0.951 29 H 0.111 0.889 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.978 -2.370 -17.342 18.843 hybrid contribution 0.212 -0.049 0.601 0.639 sum 7.190 -2.418 -16.741 18.380 Atomic orbital electron populations 1.22084 0.98196 0.99393 1.00817 1.18950 0.90864 0.94548 0.79875 0.91885 1.21344 1.31871 1.13031 0.90277 0.92160 1.24904 0.94931 0.94965 0.99013 1.69894 1.36311 1.22564 1.23703 0.86443 0.78604 0.79569 0.82781 1.19803 1.20902 1.20946 1.48255 1.48902 1.11672 1.23538 1.21638 0.98840 0.83260 1.02544 1.20153 0.79666 0.87227 0.84027 1.90697 1.58077 1.16906 1.76603 1.20793 1.00342 0.97846 0.95448 1.19215 0.93733 0.96243 0.94149 1.20931 0.92933 0.97946 0.98425 1.20059 1.01331 0.95867 0.92382 1.19536 0.90872 0.96675 0.95644 1.19431 0.92799 0.97433 0.92106 1.19917 0.99985 0.95019 0.93728 1.87595 1.40368 1.41416 1.51407 1.21888 0.77396 0.79190 0.75458 1.93284 1.93914 1.53213 1.73121 1.93230 1.94093 1.90841 1.32027 1.87590 1.29844 1.45397 1.58102 0.95147 0.88856 0.97041 0.92699 0.93782 0.92701 0.90000 0.87544 0.87939 0.83620 0.83875 0.84002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.97 37.16 0.33 -3.06 16 2 C 0.26 6.31 2.64 -69.08 -0.18 6.13 16 3 H 0.06 1.82 6.90 -51.93 -0.36 1.46 16 4 C -0.53 -13.68 7.99 -34.44 -0.28 -13.95 16 5 H 0.06 1.53 7.33 -52.49 -0.38 1.14 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.59 -11.60 2.75 -175.26 -0.48 -12.08 16 13 C 0.08 1.20 9.24 59.85 0.55 1.75 16 14 C 0.50 9.32 7.67 -10.98 -0.08 9.24 16 15 O -0.54 -12.56 15.36 5.56 0.09 -12.47 16 16 C -0.10 -1.26 4.38 -29.04 -0.13 -1.39 16 17 C -0.03 -0.41 4.37 -104.62 -0.46 -0.87 16 18 C -0.08 -0.96 9.69 -39.58 -0.38 -1.34 16 19 C -0.08 -0.88 10.06 -39.47 -0.40 -1.28 16 20 C 0.02 0.21 7.15 -39.08 -0.28 -0.07 16 21 C 0.03 0.35 7.15 -39.08 -0.28 0.07 16 22 C -0.07 -0.88 9.71 -39.47 -0.38 -1.26 16 23 O -0.29 -3.99 11.35 -45.66 -0.52 -4.51 16 24 C 0.57 7.46 3.69 101.05 0.37 7.83 16 25 F -0.15 -2.10 17.57 2.25 0.04 -2.06 16 26 F -0.12 -1.42 17.57 2.25 0.04 -1.38 16 27 O -0.29 -3.85 11.35 -45.70 -0.52 -4.37 16 28 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 29 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.61 6.44 -51.93 -0.33 0.27 16 34 H 0.08 1.33 7.02 -51.93 -0.36 0.96 16 35 H 0.11 1.01 7.34 -51.93 -0.38 0.63 16 36 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 37 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 341.72 15.07 5.15 5.15 Total: -1.00 -31.32 341.72 -6.49 -37.81 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -4.20 Total: -0.93 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.68 Total: 3.42 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.15 Total: -36.08 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.95 Total: -21.36 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.08 Total: -3.45 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.32 -6.49 -37.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593453787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.177 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds