Wall clock time and date at job start Tue Mar 31 2020 15:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47312 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46948 * 119.99892 * 8 6 4 11 11 H 1.48500 * 109.46809 * 239.99811 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.46499 * 120.00271 * 300.00476 * 12 2 1 14 14 C 1.34783 * 119.99826 * 120.00322 * 12 2 1 15 15 O 1.21278 * 120.00109 * 359.97438 * 14 12 2 16 16 C 1.50703 * 120.00065 * 180.02562 * 14 12 2 17 17 C 1.50697 * 109.47239 * 179.97438 * 16 14 12 18 18 C 1.38247 * 119.92972 * 89.99726 * 17 16 14 19 19 C 1.38238 * 120.14723 * 179.97438 * 18 17 16 20 20 C 1.38548 * 120.02531 * 359.97438 * 19 18 17 21 21 C 1.39270 * 119.83046 * 0.03116 * 20 19 18 22 22 C 1.38239 * 119.92648 * 269.72764 * 17 16 14 23 23 O 1.36492 * 108.64193 * 179.97438 * 21 20 19 24 24 C 1.43983 * 105.48704 * 342.71659 * 23 21 20 25 25 F 1.39899 * 110.57257 * 268.55807 * 24 23 21 26 26 F 1.39898 * 110.70402 * 145.74333 * 24 23 21 27 27 O 1.36502 * 131.53313 * 180.02562 * 20 19 18 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47057 * 89.99771 * 13 12 2 33 33 H 1.09006 * 109.46711 * 209.99932 * 13 12 2 34 34 H 1.08998 * 109.46853 * 329.99725 * 13 12 2 35 35 H 1.08999 * 109.46819 * 299.99778 * 16 14 12 36 36 H 1.08998 * 109.47107 * 59.99963 * 16 14 12 37 37 H 1.08005 * 119.92728 * 0.02562 * 18 17 16 38 38 H 1.07997 * 119.99234 * 180.02562 * 19 18 17 39 39 H 1.07998 * 119.98526 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1454 -2.2877 3.6038 10 1 3.1467 -0.1874 4.8165 11 1 1.1660 -1.5866 4.8160 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0834 15 8 3.0859 1.1255 -1.8917 16 6 3.2950 -0.7460 -3.3141 17 6 4.1318 0.2013 -4.1347 18 6 5.4934 0.2890 -3.9117 19 6 6.2654 1.1560 -4.6621 20 6 5.6755 1.9394 -5.6409 21 6 4.3039 1.8512 -5.8655 22 6 3.5372 0.9766 -5.1126 23 8 3.9698 2.7139 -6.8691 24 6 5.0787 3.6259 -6.9772 25 9 4.8737 4.7474 -6.1665 26 9 5.2737 4.0118 -8.3077 27 8 6.2008 2.8572 -6.5041 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.7090 1.1614 3.4844 32 1 0.7374 -2.1443 -1.9993 33 1 2.4628 -2.5819 -1.9864 34 1 1.5294 -2.5969 -0.4708 35 1 3.9004 -1.6026 -3.0178 36 1 2.4470 -1.0881 -3.9073 37 1 5.9551 -0.3219 -3.1500 38 1 7.3289 1.2223 -4.4861 39 1 2.4742 0.9025 -5.2880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593453787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:32 Heat of formation + Delta-G solvation = -189.157217 kcal Electronic energy + Delta-G solvation = -27630.016800 eV Core-core repulsion = 23173.917321 eV Total energy + Delta-G solvation = -4456.099479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.70076 -49.15907 -43.39152 -40.86471 -39.05197 -38.18201 -37.01127 -34.79753 -33.37137 -31.70253 -31.21037 -28.38868 -27.41139 -27.25399 -26.35410 -24.43665 -24.09499 -22.67375 -20.46234 -20.22656 -20.00692 -19.58394 -18.57803 -18.43643 -17.80320 -17.11222 -17.03445 -16.81055 -16.25349 -16.00615 -15.87948 -15.86862 -15.43389 -15.30470 -15.19450 -15.10242 -14.81939 -14.63316 -14.40969 -14.17113 -13.87892 -13.55586 -13.25440 -12.99565 -12.95434 -12.81683 -12.71026 -12.57255 -12.53399 -12.23829 -12.15340 -12.06343 -11.13001 -10.66521 -10.45334 -10.03224 -9.54096 -9.23878 -8.11461 -6.27669 -0.21472 0.01277 0.47046 1.02138 1.43236 1.45269 1.56001 1.91033 2.23928 2.42811 2.64054 2.69877 2.79481 3.08231 3.17178 3.53894 3.59866 3.79407 3.97034 4.10090 4.19520 4.46272 4.57711 4.65491 4.78790 4.80923 4.86142 4.87619 4.93675 4.95461 5.07531 5.12275 5.17521 5.37345 5.52983 5.64735 5.70438 5.73070 6.08895 6.21153 6.82232 6.93206 7.37916 7.57018 8.92904 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.022500 B = 0.002653 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.139832 B =10553.221850 C =10659.846434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.006 0.994 4 C -0.533 4.533 5 H 0.066 0.934 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.963 3.037 9 H -0.260 1.260 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.602 5.602 13 C 0.075 3.925 14 C 0.494 3.506 15 O -0.601 6.601 16 C -0.088 4.088 17 C -0.045 4.045 18 C -0.083 4.083 19 C -0.075 4.075 20 C 0.000 4.000 21 C 0.002 3.998 22 C -0.075 4.075 23 O -0.297 6.297 24 C 0.569 3.431 25 F -0.160 7.160 26 F -0.114 7.114 27 O -0.293 6.293 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.018 0.982 31 H 0.262 0.738 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.171 0.829 38 H 0.170 0.830 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.863 -6.017 -17.949 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.159 3.841 3 H 0.024 0.976 4 C -0.572 4.572 5 H 0.084 0.916 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.789 3.211 9 H -0.184 1.184 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.332 5.332 13 C -0.067 4.067 14 C 0.284 3.716 15 O -0.484 6.484 16 C -0.127 4.127 17 C -0.045 4.045 18 C -0.100 4.100 19 C -0.094 4.094 20 C -0.043 4.043 21 C -0.041 4.041 22 C -0.094 4.094 23 O -0.217 6.217 24 C 0.460 3.540 25 F -0.142 7.142 26 F -0.095 7.095 27 O -0.212 6.212 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.162 0.838 36 H 0.154 0.846 37 H 0.188 0.812 38 H 0.188 0.812 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.935 -5.223 -17.945 20.304 hybrid contribution -0.078 0.848 0.746 1.132 sum 7.857 -4.374 -17.199 19.408 Atomic orbital electron populations 1.21873 0.97531 1.00055 0.99700 1.18471 0.91335 0.92224 0.82046 0.97553 1.21652 1.31527 1.12971 0.91005 0.91566 1.25757 0.95192 0.95644 1.02152 1.70049 1.37629 1.24100 1.24209 0.85424 0.78125 0.78585 0.78978 1.18389 1.21474 1.20393 1.48237 1.49118 1.13564 1.22292 1.21930 1.01720 0.80311 1.02721 1.21255 0.78393 0.86780 0.85217 1.90675 1.59892 1.19706 1.78089 1.20792 1.01891 0.97756 0.92215 1.19403 0.94425 0.96571 0.94132 1.21317 0.92705 0.97675 0.98340 1.20444 1.02768 0.94869 0.91273 1.19890 0.90973 0.97144 0.96334 1.19694 0.93470 0.98162 0.92746 1.20159 1.00581 0.94850 0.93782 1.87562 1.40735 1.41659 1.51740 1.21898 0.77403 0.78994 0.75659 1.93266 1.93992 1.53563 1.73421 1.93240 1.94044 1.90775 1.31416 1.87568 1.29845 1.45506 1.58328 0.93373 0.91826 0.96292 0.92844 0.91652 0.88049 0.91655 0.83809 0.84610 0.81163 0.81205 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.23 8.97 71.98 0.65 -5.58 16 2 C 0.26 13.01 2.64 44.25 0.12 13.12 16 3 H 0.01 0.39 6.90 -2.39 -0.02 0.38 16 4 C -0.53 -27.69 7.99 25.60 0.20 -27.48 16 5 H 0.07 3.28 7.33 -2.91 -0.02 3.25 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -52.53 11.32 21.45 0.24 -52.28 16 8 Si 0.96 41.81 29.54 68.60 2.03 43.84 16 9 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 10 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 N -0.60 -22.66 2.75 -826.79 -2.28 -24.93 16 13 C 0.08 1.94 9.24 127.77 1.18 3.12 16 14 C 0.49 17.56 7.67 87.66 0.67 18.24 16 15 O -0.60 -28.15 15.36 -3.02 -0.05 -28.20 16 16 C -0.09 -1.78 4.38 29.10 0.13 -1.65 16 17 C -0.04 -1.01 4.37 -19.86 -0.09 -1.09 16 18 C -0.08 -1.66 9.69 22.27 0.22 -1.44 16 19 C -0.08 -1.54 10.06 22.34 0.22 -1.32 16 20 C 0.00 -0.01 7.15 22.59 0.16 0.16 16 21 C 0.00 0.06 7.15 22.59 0.16 0.23 16 22 C -0.08 -1.85 9.71 22.34 0.22 -1.63 16 23 O -0.30 -8.27 11.35 -75.96 -0.86 -9.13 16 24 C 0.57 14.95 3.69 113.37 0.42 15.37 16 25 F -0.16 -4.47 17.57 44.97 0.79 -3.68 16 26 F -0.11 -2.66 17.57 44.97 0.79 -1.87 16 27 O -0.29 -7.67 11.35 -76.07 -0.86 -8.53 16 28 H 0.05 2.02 7.67 -2.39 -0.02 2.00 16 29 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.10 1.67 6.44 -2.38 -0.02 1.65 16 34 H 0.06 1.93 7.02 -2.39 -0.02 1.91 16 35 H 0.14 1.89 7.34 -2.39 -0.02 1.87 16 36 H 0.14 1.91 8.05 -2.39 -0.02 1.89 16 37 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 38 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -72.14 341.72 5.61 -66.53 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.10 Total: 7.15 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 4.71 Total: 11.11 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -2.03 Total: -77.22 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -1.77 Total: -45.86 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 1.58 Total: -5.54 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -72.14 5.61 -66.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593453787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.627 kcal (2) G-P(sol) polarization free energy of solvation -72.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds