Wall clock time and date at job start Tue Mar 31 2020 15:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99875 * 2 1 4 4 C 1.53004 * 109.47144 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46839 * 65.33500 * 4 3 2 6 6 C 1.36915 * 120.00204 * 94.31153 * 5 4 3 7 7 H 1.07997 * 119.99730 * 232.20864 * 6 5 4 8 8 C 1.39019 * 119.99998 * 52.20351 * 6 5 4 9 9 N 1.31384 * 119.99701 * 199.92880 * 8 6 5 10 10 Si 1.86796 * 119.99690 * 19.93195 * 8 6 5 11 11 H 1.48507 * 109.47140 * 95.07385 * 10 8 6 12 12 H 1.48502 * 109.47100 * 215.07199 * 10 8 6 13 13 H 1.48503 * 109.47610 * 335.07409 * 10 8 6 14 14 C 1.34781 * 119.99967 * 274.30673 * 5 4 3 15 15 O 1.21623 * 119.99798 * 357.53477 * 14 5 4 16 16 C 1.47431 * 119.99919 * 177.53115 * 14 5 4 17 17 C 1.39651 * 120.48080 * 39.42344 * 16 14 5 18 18 N 1.31658 * 120.53301 * 179.97438 * 17 16 14 19 19 C 1.32600 * 121.65355 * 0.02562 * 18 17 16 20 20 N 1.38534 * 119.53334 * 180.02562 * 19 18 17 21 21 C 1.46895 * 111.00167 * 304.00005 * 20 19 18 22 22 C 1.46893 * 111.00056 * 67.95989 * 20 19 18 23 23 C 1.39473 * 120.92822 * 359.97438 * 19 18 17 24 24 Cl 1.73601 * 120.31719 * 180.02562 * 23 19 18 25 25 C 1.36958 * 119.36337 * 359.74285 * 23 19 18 26 26 H 1.08993 * 109.47189 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47228 * 300.00015 * 1 2 3 28 28 H 1.08999 * 109.46914 * 59.99996 * 1 2 3 29 29 H 1.09000 * 109.47040 * 60.00050 * 3 2 1 30 30 H 1.08998 * 109.47407 * 300.00233 * 3 2 1 31 31 H 1.09004 * 109.46968 * 185.33516 * 4 3 2 32 32 H 1.08993 * 109.47294 * 305.33540 * 4 3 2 33 33 H 0.97005 * 119.99187 * 180.02562 * 9 8 6 34 34 H 1.08007 * 119.73139 * 359.97438 * 17 16 14 35 35 H 1.09004 * 109.47288 * 60.00365 * 21 20 19 36 36 H 1.08997 * 109.47763 * 180.02562 * 21 20 19 37 37 H 1.09004 * 109.47558 * 300.00778 * 21 20 19 38 38 H 1.09000 * 109.47467 * 64.51261 * 22 20 19 39 39 H 1.09002 * 109.47428 * 184.51538 * 22 20 19 40 40 H 1.09001 * 109.47216 * 304.51079 * 22 20 19 41 41 H 1.08004 * 120.75814 * 180.29862 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9772 0.5713 -1.2543 6 6 4.3534 1.3615 -2.3072 7 1 3.9137 1.2079 -3.2816 8 6 5.3014 2.3614 -2.1221 9 7 5.3854 3.3536 -2.9791 10 14 6.4555 2.2939 -0.6549 11 1 7.7322 1.6516 -1.0585 12 1 6.7256 3.6727 -0.1738 13 1 5.8265 1.5040 0.4340 14 6 4.0134 -0.7708 -1.3722 15 8 3.7223 -1.4728 -0.4226 16 6 4.4057 -1.3880 -2.6524 17 6 5.4390 -0.8402 -3.4156 18 7 5.7905 -1.3908 -4.5587 19 6 5.1842 -2.4739 -5.0249 20 7 5.5901 -3.0172 -6.2329 21 6 5.5242 -2.0184 -7.3080 22 6 6.9395 -3.5879 -6.1265 23 6 4.1442 -3.0745 -4.3158 24 17 3.3618 -4.4927 -4.9407 25 6 3.7499 -2.5381 -3.1188 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.9784 2.1761 0.0962 32 1 3.8504 0.5637 0.8392 33 1 6.0471 4.0511 -2.8501 34 1 5.9539 0.0423 -3.0653 35 1 6.1766 -1.1796 -7.0653 36 1 5.8477 -2.4713 -8.2452 37 1 4.4989 -1.6630 -7.4115 38 1 6.9255 -4.4263 -5.4300 39 1 7.2654 -3.9354 -7.1069 40 1 7.6289 -2.8256 -5.7636 41 1 2.9504 -2.9877 -2.5487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594374669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:38 Heat of formation + Delta-G solvation = -17.365607 kcal Electronic energy + Delta-G solvation = -26581.275304 eV Core-core repulsion = 22716.714699 eV Total energy + Delta-G solvation = -3864.560604 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.41263 -38.86987 -37.19585 -36.40391 -36.16453 -35.00439 -32.22322 -31.91990 -30.65342 -28.97542 -27.50703 -26.02736 -25.38803 -24.78091 -23.15669 -22.60393 -21.38756 -19.49089 -17.84936 -16.86988 -16.82614 -16.29144 -15.85682 -15.63700 -15.23458 -14.91894 -14.77409 -14.37629 -14.07912 -13.93175 -13.68988 -13.44378 -13.14666 -12.72455 -12.60999 -12.23183 -12.16750 -12.10982 -11.91621 -11.79180 -11.64871 -11.50435 -11.25139 -11.13782 -10.78040 -10.56172 -10.52392 -10.07861 -9.74978 -9.37176 -9.21202 -9.15927 -8.75039 -8.52408 -8.29561 -7.73211 -6.64729 -4.37900 1.09225 1.51766 2.38715 2.98731 3.11978 3.18798 3.54494 3.77314 3.97824 4.10773 4.24449 4.39523 4.71602 4.89544 5.18386 5.32302 5.38202 5.48868 5.51927 5.57582 5.59788 5.62910 5.79271 5.80975 5.82413 5.87034 5.91136 5.92644 5.93891 6.04626 6.16487 6.23792 6.51635 6.57524 6.78663 6.86015 7.27419 7.36448 7.68225 7.95937 8.11386 8.19113 8.79607 9.14691 9.55905 10.43742 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.005239 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.398720 B = 5343.706332 C = 6977.936666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.118 3.882 5 N -0.458 5.458 6 C -0.358 4.358 7 H 0.098 0.902 8 C 0.076 3.924 9 N -0.847 5.847 10 Si 0.854 3.146 11 H -0.271 1.271 12 H -0.278 1.278 13 H -0.250 1.250 14 C 0.537 3.463 15 O -0.562 6.562 16 C -0.135 4.135 17 C 0.175 3.825 18 N -0.505 5.505 19 C 0.300 3.700 20 N -0.490 5.490 21 C 0.030 3.970 22 C 0.030 3.970 23 C -0.073 4.073 24 Cl -0.055 7.055 25 C -0.030 4.030 26 H 0.078 0.922 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.278 0.722 34 H 0.188 0.812 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.794 -7.009 -2.516 7.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C -0.030 4.030 4 C -0.006 4.006 5 N -0.179 5.179 6 C -0.485 4.485 7 H 0.115 0.885 8 C -0.134 4.134 9 N -0.479 5.479 10 Si 0.678 3.322 11 H -0.196 1.196 12 H -0.204 1.204 13 H -0.173 1.173 14 C 0.325 3.675 15 O -0.444 6.444 16 C -0.140 4.140 17 C 0.016 3.984 18 N -0.218 5.218 19 C 0.070 3.930 20 N -0.212 5.212 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.104 4.104 24 Cl -0.027 7.027 25 C -0.057 4.057 26 H 0.097 0.903 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.205 0.795 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.444 -7.441 -2.776 8.072 hybrid contribution 0.111 0.805 1.092 1.361 sum -1.333 -6.636 -1.685 6.975 Atomic orbital electron populations 1.22647 0.82857 1.01915 0.99061 1.88136 1.17911 1.27335 1.95148 1.23009 0.95316 0.84941 0.99690 1.21723 0.91355 0.98515 0.88968 1.43351 1.58277 1.03532 1.12762 1.18958 1.23635 1.14846 0.91096 0.88489 1.25539 0.96412 0.94485 0.96962 1.69758 1.32864 1.08574 1.36734 0.87219 0.82354 0.78641 0.84000 1.19607 1.20359 1.17336 1.17988 0.79915 0.83061 0.86528 1.90700 1.51843 1.62267 1.39568 1.21020 0.98945 0.95970 0.98087 1.23674 0.92253 0.95757 0.86677 1.68026 1.28555 1.09852 1.15322 1.19687 0.91640 0.90184 0.91485 1.60004 1.26520 1.32871 1.01852 1.22373 1.02573 0.93962 0.92844 1.22387 0.87322 0.99487 1.02468 1.21100 0.98734 0.93829 0.96700 1.98329 1.79288 1.37885 1.87165 1.21232 0.98302 0.93386 0.92814 0.90337 0.94961 0.94730 0.93829 0.92633 0.89897 0.90701 0.91178 0.79544 0.93417 0.91001 0.91422 0.91401 0.90811 0.93914 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.19 9.11 -49.53 -0.45 -7.64 16 3 C 0.05 0.89 6.28 37.16 0.23 1.12 16 4 C 0.12 2.42 3.92 -4.04 -0.02 2.41 16 5 N -0.46 -10.34 1.86 -116.03 -0.22 -10.56 16 6 C -0.36 -8.53 6.38 -14.99 -0.10 -8.62 16 7 H 0.10 2.55 7.54 -52.49 -0.40 2.15 16 8 C 0.08 1.82 4.80 -17.45 -0.08 1.74 16 9 N -0.85 -21.51 13.96 55.50 0.77 -20.74 16 10 Si 0.85 18.28 26.55 -169.99 -4.51 13.77 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.25 -5.24 5.51 56.52 0.31 -4.93 16 14 C 0.54 12.26 6.88 -12.52 -0.09 12.17 16 15 O -0.56 -13.80 15.48 -9.04 -0.14 -13.94 16 16 C -0.13 -2.81 5.39 -104.82 -0.57 -3.37 16 17 C 0.17 3.60 9.30 -17.10 -0.16 3.44 16 18 N -0.51 -9.73 9.41 -12.08 -0.11 -9.85 16 19 C 0.30 5.23 5.34 -155.18 -0.83 4.40 16 20 N -0.49 -7.26 4.36 -188.96 -0.82 -8.08 16 21 C 0.03 0.40 9.39 60.06 0.56 0.96 16 22 C 0.03 0.38 9.55 60.06 0.57 0.96 16 23 C -0.07 -1.26 6.32 -39.59 -0.25 -1.51 16 24 Cl -0.06 -0.82 28.44 -51.86 -1.47 -2.30 16 25 C -0.03 -0.56 9.52 -39.24 -0.37 -0.93 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.64 5.39 -51.93 -0.28 1.36 16 32 H 0.07 1.58 7.42 -51.93 -0.39 1.19 16 33 H 0.28 6.62 8.31 -40.82 -0.34 6.29 16 34 H 0.19 4.10 5.85 -52.48 -0.31 3.79 16 35 H 0.05 0.69 7.75 -51.93 -0.40 0.29 16 36 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 40 H 0.04 0.58 7.88 -51.93 -0.41 0.17 16 41 H 0.15 2.62 8.06 -52.48 -0.42 2.19 16 LS Contribution 354.28 15.07 5.34 5.34 Total: -1.00 -27.74 354.28 -7.22 -34.96 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.62 Total: 4.69 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 0.03 Total: 14.34 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.38 Total: -49.22 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.59 Total: -21.58 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -4.51 Total: 13.77 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.47 Total: -2.30 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.74 -7.22 -34.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594374669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.593 kcal (2) G-P(sol) polarization free energy of solvation -27.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds