Wall clock time and date at job start Tue Mar 31 2020 15:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99875 * 2 1 4 4 C 1.53004 * 109.47144 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46839 * 65.33500 * 4 3 2 6 6 C 1.36915 * 120.00204 * 94.31153 * 5 4 3 7 7 H 1.07997 * 119.99730 * 232.20864 * 6 5 4 8 8 C 1.39019 * 119.99998 * 52.20351 * 6 5 4 9 9 N 1.31384 * 119.99701 * 199.92880 * 8 6 5 10 10 Si 1.86796 * 119.99690 * 19.93195 * 8 6 5 11 11 H 1.48507 * 109.47140 * 95.07385 * 10 8 6 12 12 H 1.48502 * 109.47100 * 215.07199 * 10 8 6 13 13 H 1.48503 * 109.47610 * 335.07409 * 10 8 6 14 14 C 1.34781 * 119.99967 * 274.30673 * 5 4 3 15 15 O 1.21623 * 119.99798 * 357.53477 * 14 5 4 16 16 C 1.47431 * 119.99919 * 177.53115 * 14 5 4 17 17 C 1.39651 * 120.48080 * 39.42344 * 16 14 5 18 18 N 1.31658 * 120.53301 * 179.97438 * 17 16 14 19 19 C 1.32600 * 121.65355 * 0.02562 * 18 17 16 20 20 N 1.38534 * 119.53334 * 180.02562 * 19 18 17 21 21 C 1.46895 * 111.00167 * 304.00005 * 20 19 18 22 22 C 1.46893 * 111.00056 * 67.95989 * 20 19 18 23 23 C 1.39473 * 120.92822 * 359.97438 * 19 18 17 24 24 Cl 1.73601 * 120.31719 * 180.02562 * 23 19 18 25 25 C 1.36958 * 119.36337 * 359.74285 * 23 19 18 26 26 H 1.08993 * 109.47189 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47228 * 300.00015 * 1 2 3 28 28 H 1.08999 * 109.46914 * 59.99996 * 1 2 3 29 29 H 1.09000 * 109.47040 * 60.00050 * 3 2 1 30 30 H 1.08998 * 109.47407 * 300.00233 * 3 2 1 31 31 H 1.09004 * 109.46968 * 185.33516 * 4 3 2 32 32 H 1.08993 * 109.47294 * 305.33540 * 4 3 2 33 33 H 0.97005 * 119.99187 * 180.02562 * 9 8 6 34 34 H 1.08007 * 119.73139 * 359.97438 * 17 16 14 35 35 H 1.09004 * 109.47288 * 60.00365 * 21 20 19 36 36 H 1.08997 * 109.47763 * 180.02562 * 21 20 19 37 37 H 1.09004 * 109.47558 * 300.00778 * 21 20 19 38 38 H 1.09000 * 109.47467 * 64.51261 * 22 20 19 39 39 H 1.09002 * 109.47428 * 184.51538 * 22 20 19 40 40 H 1.09001 * 109.47216 * 304.51079 * 22 20 19 41 41 H 1.08004 * 120.75814 * 180.29862 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9772 0.5713 -1.2543 6 6 4.3534 1.3615 -2.3072 7 1 3.9137 1.2079 -3.2816 8 6 5.3014 2.3614 -2.1221 9 7 5.3854 3.3536 -2.9791 10 14 6.4555 2.2939 -0.6549 11 1 7.7322 1.6516 -1.0585 12 1 6.7256 3.6727 -0.1738 13 1 5.8265 1.5040 0.4340 14 6 4.0134 -0.7708 -1.3722 15 8 3.7223 -1.4728 -0.4226 16 6 4.4057 -1.3880 -2.6524 17 6 5.4390 -0.8402 -3.4156 18 7 5.7905 -1.3908 -4.5587 19 6 5.1842 -2.4739 -5.0249 20 7 5.5901 -3.0172 -6.2329 21 6 5.5242 -2.0184 -7.3080 22 6 6.9395 -3.5879 -6.1265 23 6 4.1442 -3.0745 -4.3158 24 17 3.3618 -4.4927 -4.9407 25 6 3.7499 -2.5381 -3.1188 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.9784 2.1761 0.0962 32 1 3.8504 0.5637 0.8392 33 1 6.0471 4.0511 -2.8501 34 1 5.9539 0.0423 -3.0653 35 1 6.1766 -1.1796 -7.0653 36 1 5.8477 -2.4713 -8.2452 37 1 4.4989 -1.6630 -7.4115 38 1 6.9255 -4.4263 -5.4300 39 1 7.2654 -3.9354 -7.1069 40 1 7.6289 -2.8256 -5.7636 41 1 2.9504 -2.9877 -2.5487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594374669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:37 Heat of formation + Delta-G solvation = -33.736357 kcal Electronic energy + Delta-G solvation = -26581.985193 eV Core-core repulsion = 22716.714699 eV Total energy + Delta-G solvation = -3865.270493 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.91887 -40.50518 -38.61253 -37.71623 -37.52038 -36.79072 -34.06892 -33.42702 -32.16488 -30.46845 -28.55822 -27.31120 -27.05235 -26.29092 -24.69988 -24.06404 -22.78426 -21.23809 -19.55527 -18.41518 -18.18300 -17.96735 -17.29095 -17.13348 -16.64543 -16.41890 -16.29002 -15.84083 -15.62105 -15.35308 -15.08796 -14.91239 -14.63873 -14.30773 -14.28728 -13.75158 -13.60101 -13.41237 -13.26978 -12.99150 -12.88585 -12.84740 -12.69005 -12.64570 -12.29160 -12.08941 -11.96218 -11.78283 -11.39619 -10.94176 -10.83971 -10.56905 -10.42301 -9.87674 -9.68990 -9.55030 -8.52936 -6.28099 -0.41338 0.01501 1.00629 1.25468 1.37086 1.45623 1.87258 2.19302 2.46192 2.53401 2.60675 2.93484 3.02331 3.41944 3.79017 3.84538 3.97980 4.19873 4.24949 4.29127 4.32295 4.42928 4.43849 4.53714 4.56662 4.58949 4.62499 4.65336 4.74305 4.83183 4.93468 4.94933 4.97332 5.03479 5.23450 5.48736 5.74913 6.03456 6.09269 6.19989 6.37401 6.66951 6.92862 7.31693 7.74811 8.59266 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.005239 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.398720 B = 5343.706332 C = 6977.936666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.054 3.946 4 C 0.110 3.890 5 N -0.463 5.463 6 C -0.345 4.345 7 H 0.066 0.934 8 C 0.050 3.950 9 N -0.883 5.883 10 Si 0.901 3.099 11 H -0.275 1.275 12 H -0.269 1.269 13 H -0.244 1.244 14 C 0.535 3.465 15 O -0.583 6.583 16 C -0.158 4.158 17 C 0.170 3.830 18 N -0.515 5.515 19 C 0.307 3.693 20 N -0.490 5.490 21 C 0.030 3.970 22 C 0.030 3.970 23 C -0.073 4.073 24 Cl -0.027 7.027 25 C -0.025 4.025 26 H 0.089 0.911 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.282 0.718 34 H 0.168 0.832 35 H 0.031 0.969 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.029 0.971 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 -8.215 -2.773 8.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.024 4.024 4 C -0.012 4.012 5 N -0.184 5.184 6 C -0.473 4.473 7 H 0.083 0.917 8 C -0.157 4.157 9 N -0.517 5.517 10 Si 0.724 3.276 11 H -0.201 1.201 12 H -0.194 1.194 13 H -0.167 1.167 14 C 0.324 3.676 15 O -0.466 6.466 16 C -0.163 4.163 17 C 0.011 3.989 18 N -0.227 5.227 19 C 0.077 3.923 20 N -0.214 5.214 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.103 4.103 24 Cl 0.002 6.998 25 C -0.052 4.052 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.185 0.815 35 H 0.050 0.950 36 H 0.125 0.875 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.048 0.952 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.685 -8.640 -3.030 9.310 hybrid contribution 0.117 1.037 1.036 1.471 sum -1.569 -7.603 -1.994 8.015 Atomic orbital electron populations 1.22850 0.80507 1.03133 1.00398 1.88081 1.20585 1.27864 1.95420 1.22917 0.93679 0.85002 1.00771 1.21858 0.93301 0.98395 0.87686 1.43433 1.58344 1.03528 1.13061 1.18569 1.23538 1.14724 0.90449 0.91677 1.25913 0.97028 0.93943 0.98840 1.69809 1.33902 1.09501 1.38527 0.86480 0.80445 0.78958 0.81739 1.20078 1.19403 1.16727 1.18255 0.79322 0.83056 0.86978 1.90666 1.52942 1.62595 1.40443 1.20913 1.00124 0.97302 0.97938 1.23313 0.92515 0.95626 0.87406 1.68025 1.29173 1.10788 1.14762 1.20044 0.90975 0.89196 0.92121 1.60171 1.27847 1.32650 1.00691 1.22440 1.01955 0.93529 0.93706 1.22494 0.85682 0.98967 1.04500 1.21136 0.98526 0.94552 0.96132 1.98338 1.78679 1.36063 1.86710 1.21298 0.98086 0.92565 0.93292 0.89279 0.92573 0.94341 0.90409 0.93705 0.89371 0.91226 0.90774 0.81478 0.94984 0.87529 0.92132 0.91140 0.87563 0.95182 0.82768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -15.38 9.11 -135.30 -1.23 -16.62 16 3 C 0.05 1.94 6.28 71.98 0.45 2.39 16 4 C 0.11 4.51 3.92 86.38 0.34 4.85 16 5 N -0.46 -21.25 1.86 -639.24 -1.19 -22.44 16 6 C -0.35 -16.93 6.38 84.09 0.54 -16.39 16 7 H 0.07 3.59 7.54 -2.91 -0.02 3.57 16 8 C 0.05 2.43 4.80 84.95 0.41 2.84 16 9 N -0.88 -45.74 13.96 21.68 0.30 -45.44 16 10 Si 0.90 37.82 26.55 68.60 1.82 39.64 16 11 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 12 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 13 H -0.24 -9.94 5.51 99.48 0.55 -9.39 16 14 C 0.54 24.86 6.88 86.66 0.60 25.46 16 15 O -0.58 -28.88 15.48 9.57 0.15 -28.73 16 16 C -0.16 -6.69 5.39 -19.99 -0.11 -6.79 16 17 C 0.17 7.20 9.30 85.06 0.79 7.99 16 18 N -0.51 -20.03 9.41 -192.14 -1.81 -21.83 16 19 C 0.31 10.46 5.34 133.25 0.71 11.17 16 20 N -0.49 -13.57 4.36 -751.76 -3.28 -16.85 16 21 C 0.03 0.76 9.39 127.69 1.20 1.96 16 22 C 0.03 0.68 9.55 127.69 1.22 1.90 16 23 C -0.07 -2.44 6.32 22.27 0.14 -2.30 16 24 Cl -0.03 -0.74 28.44 -2.72 -0.08 -0.82 16 25 C -0.03 -0.93 9.52 22.49 0.21 -0.72 16 26 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 3.44 5.39 -2.38 -0.01 3.43 16 32 H 0.07 2.91 7.42 -2.39 -0.02 2.89 16 33 H 0.28 13.64 8.31 -92.70 -0.77 12.87 16 34 H 0.17 7.69 5.85 -2.91 -0.02 7.68 16 35 H 0.03 0.90 7.75 -2.39 -0.02 0.88 16 36 H 0.11 1.91 8.07 -2.39 -0.02 1.89 16 37 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.11 1.75 8.04 -2.39 -0.02 1.73 16 40 H 0.03 0.77 7.88 -2.39 -0.02 0.75 16 41 H 0.15 5.42 8.06 -2.91 -0.02 5.40 16 Total: -1.00 -59.97 354.28 3.32 -56.65 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.89 Total: 22.07 kcal Atomic # 6 Polarization: 26.62 SS G_CDS: 7.75 Total: 34.37 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -5.97 Total: -106.55 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -1.08 Total: -45.35 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 1.82 Total: 39.64 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -59.97 3.32 -56.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594374669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.910 kcal (2) G-P(sol) polarization free energy of solvation -59.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds