Wall clock time and date at job start Tue Mar 31 2020 14:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 120.00302 * 2 1 4 4 N 1.46502 * 109.47317 * 125.00342 * 3 2 1 5 5 C 1.46503 * 120.00016 * 275.00655 * 4 3 2 6 6 C 1.50697 * 109.46910 * 274.99598 * 5 4 3 7 7 H 1.08002 * 120.00233 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00024 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00019 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00227 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46616 * 60.01028 * 10 8 6 12 12 H 1.48501 * 109.47132 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47457 * 300.01139 * 10 8 6 14 14 S 1.65593 * 119.99877 * 95.00138 * 4 3 2 15 15 O 1.42101 * 104.27879 * 153.92907 * 14 4 3 16 16 O 1.42098 * 104.27649 * 26.07504 * 14 4 3 17 17 C 1.81407 * 104.45166 * 270.00235 * 14 4 3 18 18 C 1.52998 * 109.47084 * 179.97438 * 17 14 4 19 19 C 1.50699 * 109.47204 * 179.97438 * 18 17 14 20 20 C 1.38250 * 119.97575 * 270.32991 * 19 18 17 21 21 C 1.38194 * 120.02377 * 180.27953 * 20 19 18 22 22 C 1.38460 * 119.97497 * 359.41202 * 21 20 19 23 23 F 1.35105 * 120.02800 * 180.30394 * 22 21 20 24 24 C 1.38467 * 119.94896 * 0.28520 * 22 21 20 25 25 C 1.38197 * 119.97188 * 359.97438 * 24 22 21 26 26 H 1.07995 * 120.00213 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.99811 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.00098 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46791 * 5.00493 * 3 2 1 30 30 H 1.08997 * 109.47465 * 245.00806 * 3 2 1 31 31 H 1.08998 * 109.47138 * 34.99596 * 5 4 3 32 32 H 1.09001 * 109.46894 * 154.99589 * 5 4 3 33 33 H 0.97003 * 120.00347 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.46773 * 59.99977 * 17 14 4 35 35 H 1.08995 * 109.46887 * 300.00200 * 17 14 4 36 36 H 1.09007 * 109.46864 * 60.00168 * 18 17 14 37 37 H 1.08994 * 109.47451 * 300.00512 * 18 17 14 38 38 H 1.07998 * 119.98560 * 359.97438 * 20 19 18 39 39 H 1.08002 * 120.01531 * 179.69754 * 21 20 19 40 40 H 1.07998 * 120.01314 * 180.02562 * 24 22 21 41 41 H 1.07994 * 119.98607 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5286 1.7619 2.4523 6 6 2.5993 3.2644 2.5451 7 1 2.9548 3.8413 1.7041 8 6 2.2092 3.9027 3.7033 9 7 1.7758 3.2003 4.7272 10 14 2.2975 5.7651 3.8186 11 1 1.4359 6.3673 2.7695 12 1 1.8258 6.2010 5.1575 13 1 3.7011 6.2074 3.6204 14 16 4.5713 0.8758 0.9171 15 8 5.2789 1.5736 1.9329 16 8 4.8253 1.1282 -0.4580 17 6 4.5760 -0.9077 1.2485 18 6 5.9952 -1.4539 1.0804 19 6 5.9992 -2.9354 1.3563 20 6 6.2145 -3.3982 2.6411 21 6 6.2241 -4.7568 2.8942 22 6 6.0060 -5.6542 1.8626 23 9 6.0091 -6.9824 2.1099 24 6 5.7842 -5.1893 0.5773 25 6 5.7804 -3.8305 0.3256 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0897 30 1 2.6212 1.4027 -0.9314 31 1 1.4985 1.4370 2.5983 32 1 3.1615 1.3202 3.2220 33 1 1.5017 3.6493 5.5422 34 1 3.9086 -1.4092 0.5476 35 1 4.2349 -1.0887 2.2678 36 1 6.6629 -0.9524 1.7811 37 1 6.3359 -1.2728 0.0610 38 1 6.3801 -2.6979 3.4464 39 1 6.3972 -5.1183 3.8971 40 1 5.6135 -5.8884 -0.2281 41 1 5.6070 -3.4677 -0.6767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594776049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:09 Heat of formation + Delta-G solvation = -74.888004 kcal Electronic energy + Delta-G solvation = -25351.062575 eV Core-core repulsion = 21466.131357 eV Total energy + Delta-G solvation = -3884.931218 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.11504 -39.47333 -36.66391 -36.35259 -35.33859 -34.31068 -33.21324 -31.89936 -31.40417 -29.43716 -27.48809 -25.05870 -24.33340 -23.32674 -22.30795 -21.39363 -19.72387 -18.26643 -17.91327 -17.12365 -16.73583 -16.49390 -16.06661 -15.86424 -15.80130 -15.44742 -14.90016 -14.46447 -14.33306 -14.20976 -13.77695 -13.64882 -13.31129 -13.30064 -13.00757 -12.44439 -12.23885 -12.10881 -12.00950 -11.75998 -11.57291 -11.49469 -11.31795 -11.15552 -11.10685 -10.93732 -10.69714 -10.55643 -10.32016 -10.00498 -9.77217 -9.38192 -9.15948 -8.80393 -8.43521 -8.09360 -6.05788 -4.09076 0.69546 0.91217 0.96152 2.47684 3.24688 3.34238 3.37819 3.38659 3.44100 4.01004 4.32234 4.38682 4.44678 4.49661 4.54957 4.64471 4.77783 4.88950 5.00852 5.11800 5.21335 5.29368 5.31382 5.39740 5.51432 5.59845 5.66919 5.77464 5.83879 5.85439 5.96613 6.07036 6.26879 6.27049 6.44140 6.62239 6.81983 6.94707 7.20954 7.37182 7.57439 7.91699 8.21058 8.92943 9.55686 11.02875 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015468 B = 0.003176 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.732170 B = 8814.725978 C = 9224.109706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.173 4.173 3 C 0.144 3.856 4 N -0.979 5.979 5 C 0.257 3.743 6 C -0.525 4.525 7 H 0.060 0.940 8 C 0.062 3.938 9 N -0.897 5.897 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.274 1.274 14 S 2.603 3.397 15 O -0.934 6.934 16 O -0.972 6.972 17 C -0.640 4.640 18 C -0.071 4.071 19 C -0.080 4.080 20 C -0.086 4.086 21 C -0.150 4.150 22 C 0.090 3.910 23 F -0.142 7.142 24 C -0.152 4.152 25 C -0.088 4.088 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.977 -15.781 -7.941 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.193 4.193 3 C 0.018 3.982 4 N -0.816 5.816 5 C 0.135 3.865 6 C -0.564 4.564 7 H 0.079 0.921 8 C -0.140 4.140 9 N -0.536 5.536 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.200 1.200 14 S 2.694 3.306 15 O -0.924 6.924 16 O -0.963 6.963 17 C -0.766 4.766 18 C -0.110 4.110 19 C -0.081 4.081 20 C -0.104 4.104 21 C -0.169 4.169 22 C 0.071 3.929 23 F -0.121 7.121 24 C -0.171 4.171 25 C -0.106 4.106 26 H 0.111 0.889 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.617 -15.236 -7.952 18.081 hybrid contribution -0.526 -0.069 0.551 0.765 sum 5.091 -15.305 -7.401 17.746 Atomic orbital electron populations 1.23801 0.95845 1.01733 1.00366 1.23502 0.96716 0.98993 1.00122 1.20363 0.93301 0.95260 0.89255 1.57438 1.27279 1.78836 1.18091 1.19072 0.96110 0.95353 0.75945 1.21431 1.43370 0.91773 0.99859 0.92129 1.24917 0.95030 0.98634 0.95430 1.69905 1.43912 1.35685 1.04142 0.86586 0.78697 0.85273 0.77067 1.20217 1.21237 1.19983 1.05235 0.74332 0.76810 0.74250 1.93641 1.71360 1.68060 1.59340 1.93511 1.84516 1.83893 1.34349 1.30964 1.03864 1.29305 1.12453 1.20300 0.94148 0.92525 1.04027 1.19784 0.99646 0.95159 0.93518 1.21041 0.97840 0.94737 0.96748 1.21167 1.03332 0.93265 0.99110 1.17751 1.03266 0.77407 0.94484 1.91496 1.94116 1.31443 1.95059 1.21133 1.03615 0.96769 0.95544 1.20972 0.98251 0.91803 0.99602 0.88940 0.88153 0.88151 0.89024 0.89270 0.94529 0.94475 0.92678 0.85501 0.84833 0.89068 0.89317 0.84450 0.84591 0.84706 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 14.32 29.02 0.42 -1.91 16 2 C -0.17 -2.42 9.84 -36.02 -0.35 -2.77 16 3 C 0.14 2.41 6.09 -5.19 -0.03 2.37 16 4 N -0.98 -19.11 2.68 -116.94 -0.31 -19.42 16 5 C 0.26 6.18 5.01 -5.19 -0.03 6.15 16 6 C -0.52 -14.43 9.38 -34.44 -0.32 -14.75 16 7 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 10 Si 0.90 21.63 29.54 -169.99 -5.02 16.60 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 S 2.60 46.54 5.37 -107.50 -0.58 45.97 16 15 O -0.93 -20.76 16.99 -57.54 -0.98 -21.74 16 16 O -0.97 -18.40 16.53 -57.54 -0.95 -19.35 16 17 C -0.64 -8.09 6.16 37.16 0.23 -7.86 16 18 C -0.07 -0.79 5.35 -27.88 -0.15 -0.94 16 19 C -0.08 -0.83 5.13 -104.62 -0.54 -1.37 16 20 C -0.09 -0.86 9.70 -39.59 -0.38 -1.25 16 21 C -0.15 -1.47 10.03 -39.52 -0.40 -1.87 16 22 C 0.09 0.94 7.30 -39.42 -0.29 0.65 16 23 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 24 C -0.15 -1.42 10.03 -39.51 -0.40 -1.82 16 25 C -0.09 -0.83 9.70 -39.59 -0.38 -1.21 16 26 H 0.09 1.02 8.06 -52.49 -0.42 0.60 16 27 H 0.10 1.30 7.84 -52.49 -0.41 0.89 16 28 H 0.10 1.21 7.24 -52.49 -0.38 0.83 16 29 H 0.09 1.59 7.76 -51.93 -0.40 1.19 16 30 H 0.09 1.40 6.82 -51.93 -0.35 1.04 16 31 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 32 H 0.04 0.94 7.61 -51.93 -0.40 0.54 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.13 1.34 7.32 -51.92 -0.38 0.96 16 35 H 0.13 1.65 8.14 -51.93 -0.42 1.22 16 36 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 37 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 38 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -33.26 369.90 -9.88 -43.14 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.67 Total: 0.74 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -2.72 Total: -24.93 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.42 Total: -44.47 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -1.93 Total: -41.09 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 46.54 SS G_CDS: -0.58 Total: 45.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.26 -9.88 -43.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594776049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.746 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds