Wall clock time and date at job start Tue Mar 31 2020 14:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 120.00302 * 2 1 4 4 N 1.46502 * 109.47317 * 125.00342 * 3 2 1 5 5 C 1.46503 * 120.00016 * 275.00655 * 4 3 2 6 6 C 1.50697 * 109.46910 * 274.99598 * 5 4 3 7 7 H 1.08002 * 120.00233 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00024 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00019 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00227 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46616 * 60.01028 * 10 8 6 12 12 H 1.48501 * 109.47132 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47457 * 300.01139 * 10 8 6 14 14 S 1.65593 * 119.99877 * 95.00138 * 4 3 2 15 15 O 1.42101 * 104.27879 * 153.92907 * 14 4 3 16 16 O 1.42098 * 104.27649 * 26.07504 * 14 4 3 17 17 C 1.81407 * 104.45166 * 270.00235 * 14 4 3 18 18 C 1.52998 * 109.47084 * 179.97438 * 17 14 4 19 19 C 1.50699 * 109.47204 * 179.97438 * 18 17 14 20 20 C 1.38250 * 119.97575 * 270.32991 * 19 18 17 21 21 C 1.38194 * 120.02377 * 180.27953 * 20 19 18 22 22 C 1.38460 * 119.97497 * 359.41202 * 21 20 19 23 23 F 1.35105 * 120.02800 * 180.30394 * 22 21 20 24 24 C 1.38467 * 119.94896 * 0.28520 * 22 21 20 25 25 C 1.38197 * 119.97188 * 359.97438 * 24 22 21 26 26 H 1.07995 * 120.00213 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.99811 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.00098 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46791 * 5.00493 * 3 2 1 30 30 H 1.08997 * 109.47465 * 245.00806 * 3 2 1 31 31 H 1.08998 * 109.47138 * 34.99596 * 5 4 3 32 32 H 1.09001 * 109.46894 * 154.99589 * 5 4 3 33 33 H 0.97003 * 120.00347 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.46773 * 59.99977 * 17 14 4 35 35 H 1.08995 * 109.46887 * 300.00200 * 17 14 4 36 36 H 1.09007 * 109.46864 * 60.00168 * 18 17 14 37 37 H 1.08994 * 109.47451 * 300.00512 * 18 17 14 38 38 H 1.07998 * 119.98560 * 359.97438 * 20 19 18 39 39 H 1.08002 * 120.01531 * 179.69754 * 21 20 19 40 40 H 1.07998 * 120.01314 * 180.02562 * 24 22 21 41 41 H 1.07994 * 119.98607 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5286 1.7619 2.4523 6 6 2.5993 3.2644 2.5451 7 1 2.9548 3.8413 1.7041 8 6 2.2092 3.9027 3.7033 9 7 1.7758 3.2003 4.7272 10 14 2.2975 5.7651 3.8186 11 1 1.4359 6.3673 2.7695 12 1 1.8258 6.2010 5.1575 13 1 3.7011 6.2074 3.6204 14 16 4.5713 0.8758 0.9171 15 8 5.2789 1.5736 1.9329 16 8 4.8253 1.1282 -0.4580 17 6 4.5760 -0.9077 1.2485 18 6 5.9952 -1.4539 1.0804 19 6 5.9992 -2.9354 1.3563 20 6 6.2145 -3.3982 2.6411 21 6 6.2241 -4.7568 2.8942 22 6 6.0060 -5.6542 1.8626 23 9 6.0091 -6.9824 2.1099 24 6 5.7842 -5.1893 0.5773 25 6 5.7804 -3.8305 0.3256 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0897 30 1 2.6212 1.4027 -0.9314 31 1 1.4985 1.4370 2.5983 32 1 3.1615 1.3202 3.2220 33 1 1.5017 3.6493 5.5422 34 1 3.9086 -1.4092 0.5476 35 1 4.2349 -1.0887 2.2678 36 1 6.6629 -0.9524 1.7811 37 1 6.3359 -1.2728 0.0610 38 1 6.3801 -2.6979 3.4464 39 1 6.3972 -5.1183 3.8971 40 1 5.6135 -5.8884 -0.2281 41 1 5.6070 -3.4677 -0.6767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594776049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:08 Heat of formation + Delta-G solvation = -94.968370 kcal Electronic energy + Delta-G solvation = -25351.933325 eV Core-core repulsion = 21466.131357 eV Total energy + Delta-G solvation = -3885.801968 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.90620 -40.21117 -38.13725 -37.86181 -36.86127 -35.22208 -34.96628 -33.48136 -32.10461 -30.31410 -29.29741 -26.55588 -25.35526 -24.09488 -24.03215 -22.20838 -20.83139 -19.71891 -18.77217 -18.62630 -18.28791 -17.60059 -17.38394 -17.26956 -16.59667 -16.45926 -16.37933 -15.92853 -15.36381 -15.10829 -14.99218 -14.59308 -14.44987 -14.27611 -14.18146 -14.06339 -13.68488 -13.32846 -13.10937 -13.05013 -13.04176 -12.88960 -12.83817 -12.46246 -12.42821 -12.33502 -12.24419 -11.92454 -11.87510 -11.65484 -11.49360 -10.56476 -10.25892 -10.08311 -9.77013 -9.53421 -8.17491 -6.27854 -0.64654 0.11000 0.26079 1.36688 1.39912 1.42966 1.50061 1.95441 2.42841 2.54356 3.02185 3.13453 3.27838 3.28427 3.66611 3.68690 3.73876 3.91544 3.97479 3.98901 4.20991 4.28263 4.31775 4.39230 4.50907 4.66484 4.84854 4.87221 4.98382 4.98885 5.03204 5.12140 5.15172 5.24457 5.24826 5.48377 5.52937 5.70680 5.75914 5.85626 5.90476 6.05397 6.16213 6.79720 7.40095 8.89596 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015468 B = 0.003176 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.732170 B = 8814.725978 C = 9224.109706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.185 4.185 3 C 0.139 3.861 4 N -0.989 5.989 5 C 0.274 3.726 6 C -0.544 4.544 7 H 0.048 0.952 8 C 0.013 3.987 9 N -0.924 5.924 10 Si 0.951 3.049 11 H -0.266 1.266 12 H -0.277 1.277 13 H -0.278 1.278 14 S 2.598 3.402 15 O -0.989 6.989 16 O -0.989 6.989 17 C -0.604 4.604 18 C -0.078 4.078 19 C -0.087 4.087 20 C -0.095 4.095 21 C -0.156 4.156 22 C 0.075 3.925 23 F -0.150 7.150 24 C -0.152 4.152 25 C -0.087 4.087 26 H 0.119 0.881 27 H 0.092 0.908 28 H 0.127 0.873 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.027 0.973 32 H 0.021 0.979 33 H 0.266 0.734 34 H 0.159 0.841 35 H 0.142 0.858 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.155 0.845 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 -17.373 -8.971 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.205 4.205 3 C 0.014 3.986 4 N -0.825 5.825 5 C 0.150 3.850 6 C -0.584 4.584 7 H 0.067 0.933 8 C -0.186 4.186 9 N -0.564 5.564 10 Si 0.776 3.224 11 H -0.191 1.191 12 H -0.202 1.202 13 H -0.204 1.204 14 S 2.696 3.304 15 O -0.980 6.980 16 O -0.979 6.979 17 C -0.736 4.736 18 C -0.117 4.117 19 C -0.089 4.089 20 C -0.113 4.113 21 C -0.174 4.174 22 C 0.055 3.945 23 F -0.128 7.128 24 C -0.170 4.170 25 C -0.105 4.105 26 H 0.137 0.863 27 H 0.111 0.889 28 H 0.145 0.855 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.045 0.955 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.177 0.823 35 H 0.160 0.840 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.172 0.828 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.368 -16.762 -9.018 19.776 hybrid contribution -0.419 0.311 0.818 0.971 sum 4.948 -16.451 -8.200 19.035 Atomic orbital electron populations 1.24020 0.95693 1.02681 0.98583 1.23453 0.97008 0.98367 1.01626 1.20476 0.92994 0.96661 0.88504 1.57283 1.28001 1.80237 1.17010 1.18564 0.95138 0.93395 0.77877 1.21800 1.43084 0.93878 0.99622 0.93323 1.25679 0.94830 1.02871 0.95251 1.69988 1.44638 1.37223 1.04535 0.85715 0.78493 0.80443 0.77707 1.19072 1.20165 1.20374 1.05105 0.73131 0.79024 0.73161 1.93573 1.72378 1.71467 1.60562 1.93481 1.84336 1.85446 1.34647 1.30593 1.06283 1.22803 1.13896 1.20436 0.92749 0.93210 1.05325 1.19740 1.00650 0.94508 0.93995 1.21215 0.97914 0.95036 0.97138 1.21335 1.03132 0.93207 0.99769 1.18019 1.03919 0.77221 0.95300 1.91478 1.94245 1.31952 1.95165 1.21384 1.02771 0.97260 0.95611 1.21239 0.97323 0.91564 1.00369 0.86299 0.88949 0.85543 0.90877 0.88562 0.95494 0.96134 0.92468 0.82294 0.83989 0.88999 0.87636 0.83765 0.83456 0.82773 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 14.32 67.79 0.97 -3.12 16 2 C -0.18 -4.79 9.84 25.65 0.25 -4.54 16 3 C 0.14 4.60 6.09 85.63 0.52 5.13 16 4 N -0.99 -38.92 2.68 -523.90 -1.41 -40.32 16 5 C 0.27 13.51 5.01 85.63 0.43 13.94 16 6 C -0.54 -30.75 9.38 25.60 0.24 -30.51 16 7 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 8 C 0.01 0.73 5.46 84.65 0.46 1.20 16 9 N -0.92 -53.82 13.29 21.45 0.28 -53.53 16 10 Si 0.95 44.75 29.54 68.60 2.03 46.77 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 14 S 2.60 92.35 5.37 -56.49 -0.30 92.05 16 15 O -0.99 -45.26 16.99 -127.65 -2.17 -47.43 16 16 O -0.99 -36.90 16.53 -127.65 -2.11 -39.01 16 17 C -0.60 -13.76 6.16 71.98 0.44 -13.32 16 18 C -0.08 -1.54 5.35 29.85 0.16 -1.38 16 19 C -0.09 -1.57 5.13 -19.86 -0.10 -1.68 16 20 C -0.09 -1.73 9.70 22.26 0.22 -1.51 16 21 C -0.16 -2.79 10.03 22.31 0.22 -2.57 16 22 C 0.07 1.40 7.30 22.38 0.16 1.57 16 23 F -0.15 -3.08 17.27 44.97 0.78 -2.31 16 24 C -0.15 -2.39 10.03 22.31 0.22 -2.17 16 25 C -0.09 -1.33 9.70 22.26 0.22 -1.11 16 26 H 0.12 2.22 8.06 -2.91 -0.02 2.20 16 27 H 0.09 2.32 7.84 -2.91 -0.02 2.30 16 28 H 0.13 2.57 7.24 -2.91 -0.02 2.55 16 29 H 0.07 2.62 7.76 -2.38 -0.02 2.60 16 30 H 0.10 2.99 6.82 -2.39 -0.02 2.97 16 31 H 0.03 1.36 8.11 -2.39 -0.02 1.34 16 32 H 0.02 1.08 7.61 -2.39 -0.02 1.06 16 33 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.16 2.69 7.32 -2.39 -0.02 2.67 16 35 H 0.14 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.09 1.81 8.09 -2.38 -0.02 1.79 16 37 H 0.11 1.73 8.09 -2.39 -0.02 1.71 16 38 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 39 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 41 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -73.04 369.90 2.54 -70.50 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.02 Total: 13.35 kcal Atomic # 6 Polarization: -44.49 SS G_CDS: 4.42 Total: -40.07 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -1.12 Total: -93.85 kcal Atomic # 8 Polarization: -82.16 SS G_CDS: -4.28 Total: -86.44 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 92.35 SS G_CDS: -0.30 Total: 92.05 kcal Total: -73.04 2.54 -70.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594776049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.472 kcal (2) G-P(sol) polarization free energy of solvation -73.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds