Wall clock time and date at job start Tue Mar 31 2020 15:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 116.99911 * 2 1 4 4 O 1.20823 * 120.00187 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00083 * 179.97438 * 3 2 1 6 6 H 1.09009 * 109.46956 * 299.99818 * 5 3 2 7 7 C 1.52997 * 109.47180 * 59.99709 * 5 3 2 8 8 C 1.53000 * 109.47134 * 185.00328 * 7 5 3 9 9 F 1.39906 * 109.46741 * 174.99957 * 8 7 5 10 10 F 1.39896 * 109.47222 * 294.99948 * 8 7 5 11 11 N 1.46494 * 109.47497 * 179.97438 * 5 3 2 12 12 C 1.34776 * 120.00009 * 154.99699 * 11 5 3 13 13 O 1.21609 * 120.00181 * 0.02562 * 12 11 5 14 14 C 1.47435 * 119.99851 * 180.02562 * 12 11 5 15 15 C 1.39228 * 120.28346 * 356.95366 * 14 12 11 16 16 C 1.38223 * 120.09446 * 180.28189 * 15 14 12 17 17 C 1.38830 * 120.67377 * 359.69652 * 16 15 14 18 18 C 1.37596 * 120.56835 * 0.02562 * 17 16 15 19 19 C 1.40701 * 119.88671 * 0.02562 * 18 17 16 20 20 C 1.40895 * 120.33329 * 179.97438 * 19 18 17 21 21 H 1.07996 * 120.00267 * 145.85164 * 20 19 18 22 22 C 1.40267 * 119.99452 * 325.84880 * 20 19 18 23 23 N 1.30627 * 120.00385 * 340.88870 * 22 20 19 24 24 Si 1.86804 * 119.99790 * 160.88935 * 22 20 19 25 25 H 1.48495 * 109.47084 * 179.97438 * 24 22 20 26 26 H 1.48496 * 109.47380 * 299.99975 * 24 22 20 27 27 H 1.48506 * 109.46840 * 60.00163 * 24 22 20 28 28 H 1.09001 * 109.46807 * 60.00308 * 1 2 3 29 29 H 1.09005 * 109.47173 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47391 * 300.00218 * 1 2 3 31 31 H 1.09003 * 109.47406 * 305.00170 * 7 5 3 32 32 H 1.08996 * 109.47312 * 64.99965 * 7 5 3 33 33 H 1.09002 * 109.47334 * 55.00456 * 8 7 5 34 34 H 0.96994 * 119.99831 * 334.99772 * 11 5 3 35 35 H 1.08005 * 119.95326 * 359.97438 * 15 14 12 36 36 H 1.07995 * 119.66309 * 179.71652 * 16 15 14 37 37 H 1.08000 * 119.71364 * 180.02562 * 17 16 15 38 38 H 1.08010 * 120.05680 * 180.02562 * 18 17 16 39 39 H 0.97001 * 119.99923 * 354.80539 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7809 0.8909 7 6 4.1139 0.5810 -1.2482 8 6 5.6423 0.5512 -1.1863 9 9 6.1387 -0.1822 -2.2695 10 9 6.1370 1.8586 -1.2424 11 7 3.9817 2.6797 -0.0002 12 6 5.1870 3.0262 0.4935 13 8 5.9299 2.1728 0.9390 14 6 5.6048 4.4402 0.4932 15 6 4.7864 5.4140 -0.0726 16 6 5.1846 6.7376 -0.0759 17 6 6.3964 7.1141 0.4873 18 6 7.2240 6.1752 1.0590 19 6 6.8426 4.8209 1.0745 20 6 7.6831 3.8516 1.6569 21 1 7.2546 3.0007 2.1654 22 6 9.0764 3.9919 1.5761 23 7 9.6026 4.7777 0.6751 24 14 10.1794 3.0549 2.7572 25 1 11.6002 3.3733 2.4657 26 1 9.8594 3.4499 4.1524 27 1 9.9555 1.5962 2.5919 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.7322 -0.4390 -1.2941 32 1 3.7968 1.1278 -2.1362 33 1 5.9592 0.0825 -0.2546 34 1 3.3893 3.3604 -0.3559 35 1 3.8412 5.1342 -0.5141 36 1 4.5464 7.4867 -0.5208 37 1 6.6920 8.1528 0.4765 38 1 8.1648 6.4773 1.4951 39 1 9.0361 5.2053 0.0140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601390362.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:41 Heat of formation + Delta-G solvation = -197.369571 kcal Electronic energy + Delta-G solvation = -28958.612286 eV Core-core repulsion = 24502.156693 eV Total energy + Delta-G solvation = -4456.455593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.50092 -46.48323 -40.89373 -39.06104 -37.27884 -36.65543 -34.98872 -33.92116 -31.78231 -29.78649 -29.25896 -28.52156 -26.34779 -25.09658 -22.81002 -22.35238 -21.15758 -20.62663 -19.83191 -18.31029 -17.74858 -17.39160 -17.11215 -16.93486 -16.47596 -15.91842 -15.75073 -15.29341 -14.68005 -14.44743 -14.13202 -13.95193 -13.72760 -13.61656 -13.42641 -13.38844 -12.88919 -12.62983 -12.45263 -12.28788 -12.25476 -12.03643 -11.90474 -11.46241 -11.12806 -11.09453 -10.94347 -10.88123 -10.73863 -10.41859 -10.36751 -10.13392 -9.62031 -9.06838 -8.73706 -8.55063 -7.77493 -7.58300 -7.12821 -4.44168 1.87756 2.20318 2.29958 2.76685 3.20633 3.31508 3.40717 3.61860 3.97440 4.00156 4.05494 4.42301 4.56199 4.63006 4.72821 4.81840 4.88834 4.90537 5.09769 5.23490 5.35001 5.50605 5.67784 5.70861 5.90725 6.01794 6.04530 6.18921 6.48986 6.73167 6.79206 7.01751 7.29314 7.42750 7.51723 7.60787 7.74525 7.89396 8.06858 8.20890 8.27975 8.74303 8.87233 9.24980 10.06399 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.004739 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.793002 B = 5907.543832 C = 7004.433088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.464 3.536 4 O -0.494 6.494 5 C 0.164 3.836 6 H 0.130 0.870 7 C -0.180 4.180 8 C 0.271 3.729 9 F -0.215 7.215 10 F -0.177 7.177 11 N -0.739 5.739 12 C 0.586 3.414 13 O -0.540 6.540 14 C -0.260 4.260 15 C -0.042 4.042 16 C -0.259 4.259 17 C -0.075 4.075 18 C -0.202 4.202 19 C 0.124 3.876 20 C -0.462 4.462 21 H 0.106 0.894 22 C 0.031 3.969 23 N -0.792 5.792 24 Si 1.070 2.930 25 H -0.275 1.275 26 H -0.275 1.275 27 H -0.273 1.273 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.403 0.597 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.195 -9.305 -2.010 15.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.305 3.695 4 O -0.380 6.380 5 C 0.056 3.944 6 H 0.147 0.853 7 C -0.219 4.219 8 C 0.217 3.783 9 F -0.197 7.197 10 F -0.158 7.158 11 N -0.398 5.398 12 C 0.383 3.617 13 O -0.419 6.419 14 C -0.265 4.265 15 C -0.061 4.061 16 C -0.278 4.278 17 C -0.094 4.094 18 C -0.221 4.221 19 C 0.119 3.881 20 C -0.489 4.489 21 H 0.123 0.877 22 C -0.191 4.191 23 N -0.415 5.415 24 Si 0.893 3.107 25 H -0.200 1.200 26 H -0.200 1.200 27 H -0.198 1.198 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.134 0.866 34 H 0.240 0.760 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.246 -9.794 -1.306 14.234 hybrid contribution -2.295 0.845 -0.958 2.627 sum -12.541 -8.948 -2.264 15.572 Atomic orbital electron populations 1.23315 0.75899 1.03872 1.02771 1.86491 1.23715 1.32837 1.84027 1.23654 0.91649 0.81724 0.72444 1.90683 1.66607 1.36285 1.44456 1.20002 0.86225 0.87347 1.00799 0.85254 1.23094 0.95359 1.03927 0.99545 1.21676 0.90722 0.77276 0.88641 1.92948 1.89387 1.77636 1.59710 1.93066 1.88978 1.37051 1.96711 1.46022 1.20538 1.05426 1.67776 1.18176 0.78760 0.89604 0.75156 1.90624 1.51433 1.51797 1.48035 1.19200 1.02053 0.90015 1.15223 1.20749 0.96229 0.93370 0.95738 1.20236 0.99382 0.95232 1.12993 1.20743 0.94288 0.97488 0.96849 1.21248 1.01010 0.92955 1.06847 1.17459 0.90774 0.92082 0.87799 1.21146 0.92644 1.07840 1.27267 0.87663 1.27233 0.97765 0.95677 0.98387 1.70374 1.42208 1.18870 1.10063 0.83570 0.75469 0.76425 0.75241 1.19990 1.20026 1.19844 0.91748 0.87844 0.91686 0.87206 0.89002 0.86556 0.75967 0.89116 0.88922 0.88913 0.87536 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.35 -3.71 10.37 -39.24 -0.41 -4.12 16 3 C 0.46 5.98 7.32 36.01 0.26 6.24 16 4 O -0.49 -7.52 15.59 -18.75 -0.29 -7.82 16 5 C 0.16 2.28 2.77 -69.09 -0.19 2.08 16 6 H 0.13 1.76 7.58 -51.92 -0.39 1.37 16 7 C -0.18 -2.23 5.15 -26.73 -0.14 -2.37 16 8 C 0.27 4.30 4.47 37.16 0.17 4.47 16 9 F -0.22 -3.46 17.34 2.25 0.04 -3.42 16 10 F -0.18 -3.73 12.36 2.25 0.03 -3.71 16 11 N -0.74 -12.86 4.67 -56.01 -0.26 -13.12 16 12 C 0.59 12.81 5.23 -12.52 -0.07 12.74 16 13 O -0.54 -12.66 10.06 5.27 0.05 -12.61 16 14 C -0.26 -6.26 5.92 -104.36 -0.62 -6.88 16 15 C -0.04 -0.91 9.53 -39.22 -0.37 -1.28 16 16 C -0.26 -5.54 10.03 -39.37 -0.39 -5.93 16 17 C -0.07 -1.67 10.01 -39.60 -0.40 -2.06 16 18 C -0.20 -5.01 7.86 -38.89 -0.31 -5.32 16 19 C 0.12 3.24 5.17 -106.54 -0.55 2.69 16 20 C -0.46 -12.36 7.66 -37.81 -0.29 -12.65 16 21 H 0.11 2.88 5.91 -52.49 -0.31 2.57 16 22 C 0.03 0.80 5.04 -17.30 -0.09 0.72 16 23 N -0.79 -21.13 12.57 55.56 0.70 -20.44 16 24 Si 1.07 22.19 29.98 -169.99 -5.10 17.09 16 25 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 27 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 31 H 0.11 1.02 8.00 -51.93 -0.42 0.61 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.12 1.77 7.56 -51.93 -0.39 1.38 16 34 H 0.40 6.78 5.83 -40.82 -0.24 6.54 16 35 H 0.09 1.69 6.41 -52.48 -0.34 1.35 16 36 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.11 2.70 6.93 -52.48 -0.36 2.33 16 39 H 0.30 8.22 6.54 -40.82 -0.27 7.95 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -30.83 334.40 -6.16 -36.99 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -4.05 Total: 12.33 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -1.92 Total: -6.22 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.44 Total: -33.55 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.65 Total: -24.55 kcal Atomic # 9 Polarization: -7.19 SS G_CDS: 0.07 Total: -7.12 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.10 Total: 17.09 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.83 -6.16 -36.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601390362.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.378 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds