Wall clock time and date at job start Tue Mar 31 2020 15:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 116.99911 * 2 1 4 4 O 1.20823 * 120.00187 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00083 * 179.97438 * 3 2 1 6 6 H 1.09009 * 109.46956 * 299.99818 * 5 3 2 7 7 C 1.52997 * 109.47180 * 59.99709 * 5 3 2 8 8 C 1.53000 * 109.47134 * 185.00328 * 7 5 3 9 9 F 1.39906 * 109.46741 * 174.99957 * 8 7 5 10 10 F 1.39896 * 109.47222 * 294.99948 * 8 7 5 11 11 N 1.46494 * 109.47497 * 179.97438 * 5 3 2 12 12 C 1.34776 * 120.00009 * 154.99699 * 11 5 3 13 13 O 1.21609 * 120.00181 * 0.02562 * 12 11 5 14 14 C 1.47435 * 119.99851 * 180.02562 * 12 11 5 15 15 C 1.39228 * 120.28346 * 356.95366 * 14 12 11 16 16 C 1.38223 * 120.09446 * 180.28189 * 15 14 12 17 17 C 1.38830 * 120.67377 * 359.69652 * 16 15 14 18 18 C 1.37596 * 120.56835 * 0.02562 * 17 16 15 19 19 C 1.40701 * 119.88671 * 0.02562 * 18 17 16 20 20 C 1.40895 * 120.33329 * 179.97438 * 19 18 17 21 21 H 1.07996 * 120.00267 * 145.85164 * 20 19 18 22 22 C 1.40267 * 119.99452 * 325.84880 * 20 19 18 23 23 N 1.30627 * 120.00385 * 340.88870 * 22 20 19 24 24 Si 1.86804 * 119.99790 * 160.88935 * 22 20 19 25 25 H 1.48495 * 109.47084 * 179.97438 * 24 22 20 26 26 H 1.48496 * 109.47380 * 299.99975 * 24 22 20 27 27 H 1.48506 * 109.46840 * 60.00163 * 24 22 20 28 28 H 1.09001 * 109.46807 * 60.00308 * 1 2 3 29 29 H 1.09005 * 109.47173 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47391 * 300.00218 * 1 2 3 31 31 H 1.09003 * 109.47406 * 305.00170 * 7 5 3 32 32 H 1.08996 * 109.47312 * 64.99965 * 7 5 3 33 33 H 1.09002 * 109.47334 * 55.00456 * 8 7 5 34 34 H 0.96994 * 119.99831 * 334.99772 * 11 5 3 35 35 H 1.08005 * 119.95326 * 359.97438 * 15 14 12 36 36 H 1.07995 * 119.66309 * 179.71652 * 16 15 14 37 37 H 1.08000 * 119.71364 * 180.02562 * 17 16 15 38 38 H 1.08010 * 120.05680 * 180.02562 * 18 17 16 39 39 H 0.97001 * 119.99923 * 354.80539 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7809 0.8909 7 6 4.1139 0.5810 -1.2482 8 6 5.6423 0.5512 -1.1863 9 9 6.1387 -0.1822 -2.2695 10 9 6.1370 1.8586 -1.2424 11 7 3.9817 2.6797 -0.0002 12 6 5.1870 3.0262 0.4935 13 8 5.9299 2.1728 0.9390 14 6 5.6048 4.4402 0.4932 15 6 4.7864 5.4140 -0.0726 16 6 5.1846 6.7376 -0.0759 17 6 6.3964 7.1141 0.4873 18 6 7.2240 6.1752 1.0590 19 6 6.8426 4.8209 1.0745 20 6 7.6831 3.8516 1.6569 21 1 7.2546 3.0007 2.1654 22 6 9.0764 3.9919 1.5761 23 7 9.6026 4.7777 0.6751 24 14 10.1794 3.0549 2.7572 25 1 11.6002 3.3733 2.4657 26 1 9.8594 3.4499 4.1524 27 1 9.9555 1.5962 2.5919 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.7322 -0.4390 -1.2941 32 1 3.7968 1.1278 -2.1362 33 1 5.9592 0.0825 -0.2546 34 1 3.3893 3.3604 -0.3559 35 1 3.8412 5.1342 -0.5141 36 1 4.5464 7.4867 -0.5208 37 1 6.6920 8.1528 0.4765 38 1 8.1648 6.4773 1.4951 39 1 9.0361 5.2053 0.0140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601390362.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:40 Heat of formation + Delta-G solvation = -215.800938 kcal Electronic energy + Delta-G solvation = -28959.411530 eV Core-core repulsion = 24502.156693 eV Total energy + Delta-G solvation = -4457.254837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.85516 -47.88302 -41.94475 -40.65404 -38.89864 -37.73970 -36.39376 -35.73253 -33.24458 -31.55279 -31.01536 -29.37617 -27.55666 -26.81467 -24.37533 -23.58005 -22.84176 -21.94609 -21.35470 -20.01168 -19.08777 -18.63207 -18.32850 -18.16272 -17.63649 -17.41323 -16.93057 -16.64610 -16.38295 -16.07587 -15.68845 -15.49572 -15.31398 -14.91649 -14.60069 -14.52455 -14.40443 -14.11171 -13.94733 -13.74822 -13.57527 -13.35550 -12.97902 -12.85778 -12.84346 -12.62888 -12.46800 -12.10901 -11.99277 -11.93723 -11.88096 -11.55537 -11.43248 -10.92420 -10.34793 -10.18152 -9.60033 -9.46247 -9.05686 -6.40637 0.43268 0.86485 0.93426 1.27999 1.50003 1.65354 1.79219 2.22942 2.34544 2.35886 2.79362 2.85119 3.28337 3.45319 3.60498 3.64089 3.78390 3.95433 4.20163 4.23364 4.28785 4.29133 4.33930 4.44872 4.59887 4.66529 4.72133 4.80547 4.89444 5.12924 5.17016 5.38631 5.45297 5.68274 5.72693 5.90833 5.99153 6.22456 6.35636 6.45215 6.62054 6.86037 6.95355 7.58361 8.09171 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.004739 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.793002 B = 5907.543832 C = 7004.433088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.348 6.348 3 C 0.477 3.523 4 O -0.519 6.519 5 C 0.159 3.841 6 H 0.133 0.867 7 C -0.163 4.163 8 C 0.260 3.740 9 F -0.217 7.217 10 F -0.210 7.210 11 N -0.729 5.729 12 C 0.588 3.412 13 O -0.560 6.560 14 C -0.277 4.277 15 C -0.046 4.046 16 C -0.249 4.249 17 C -0.073 4.073 18 C -0.227 4.227 19 C 0.100 3.900 20 C -0.500 4.500 21 H 0.089 0.911 22 C -0.003 4.003 23 N -0.819 5.819 24 Si 1.115 2.885 25 H -0.270 1.270 26 H -0.260 1.260 27 H -0.267 1.267 28 H 0.067 0.933 29 H 0.138 0.862 30 H 0.062 0.938 31 H 0.149 0.851 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.407 0.593 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.760 -10.173 -2.548 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C 0.319 3.681 4 O -0.408 6.408 5 C 0.053 3.947 6 H 0.150 0.850 7 C -0.202 4.202 8 C 0.207 3.793 9 F -0.198 7.198 10 F -0.192 7.192 11 N -0.386 5.386 12 C 0.383 3.617 13 O -0.441 6.441 14 C -0.282 4.282 15 C -0.065 4.065 16 C -0.268 4.268 17 C -0.092 4.092 18 C -0.246 4.246 19 C 0.096 3.904 20 C -0.528 4.528 21 H 0.107 0.893 22 C -0.218 4.218 23 N -0.443 5.443 24 Si 0.932 3.068 25 H -0.194 1.194 26 H -0.184 1.184 27 H -0.192 1.192 28 H 0.086 0.914 29 H 0.156 0.844 30 H 0.081 0.919 31 H 0.167 0.833 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.245 0.755 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.108 0.892 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.866 -10.679 -1.859 16.823 hybrid contribution -1.799 1.115 -0.897 2.298 sum -14.664 -9.564 -2.756 17.723 Atomic orbital electron populations 1.23677 0.73812 1.06234 1.02852 1.86476 1.25556 1.31020 1.83265 1.23215 0.90849 0.82129 0.71904 1.90682 1.66929 1.37267 1.45878 1.20169 0.87579 0.85154 1.01841 0.84950 1.23018 0.92314 1.06140 0.98768 1.22052 0.92920 0.75629 0.88703 1.92938 1.89686 1.77430 1.59754 1.92998 1.89736 1.39599 1.96844 1.45725 1.19042 1.07414 1.66400 1.17920 0.79828 0.88712 0.75259 1.90605 1.52500 1.52078 1.48897 1.19699 1.01742 0.92227 1.14544 1.21132 0.97159 0.93172 0.95025 1.20744 0.98983 0.96001 1.11064 1.21118 0.94119 0.98490 0.95442 1.21223 1.01334 0.93322 1.08728 1.17845 0.91885 0.92701 0.88018 1.21097 0.93511 1.08263 1.29919 0.89273 1.28453 0.98944 0.95630 0.98777 1.70489 1.41479 1.21291 1.11046 0.83034 0.74022 0.75548 0.74156 1.19449 1.18407 1.19156 0.91432 0.84383 0.91919 0.83264 0.88445 0.86326 0.75505 0.85766 0.85145 0.85998 0.89216 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.35 -6.10 10.37 -51.35 -0.53 -6.63 16 3 C 0.48 11.05 7.32 71.24 0.52 11.57 16 4 O -0.52 -14.61 15.59 21.97 0.34 -14.27 16 5 C 0.16 4.12 2.77 44.25 0.12 4.24 16 6 H 0.13 3.41 7.58 -2.38 -0.02 3.39 16 7 C -0.16 -3.66 5.15 30.59 0.16 -3.51 16 8 C 0.26 8.10 4.47 71.98 0.32 8.42 16 9 F -0.22 -6.76 17.34 44.97 0.78 -5.98 16 10 F -0.21 -9.01 12.36 44.97 0.56 -8.46 16 11 N -0.73 -24.51 4.67 -449.36 -2.10 -26.60 16 12 C 0.59 25.85 5.23 86.67 0.45 26.30 16 13 O -0.56 -26.96 10.06 -4.06 -0.04 -27.00 16 14 C -0.28 -13.46 5.92 -19.70 -0.12 -13.58 16 15 C -0.05 -1.92 9.53 22.50 0.21 -1.71 16 16 C -0.25 -9.99 10.03 22.41 0.22 -9.77 16 17 C -0.07 -3.19 10.01 22.26 0.22 -2.97 16 18 C -0.23 -11.62 7.86 22.72 0.18 -11.44 16 19 C 0.10 5.41 5.17 -21.11 -0.11 5.30 16 20 C -0.50 -28.12 7.66 23.41 0.18 -27.94 16 21 H 0.09 5.16 5.91 -2.91 -0.02 5.14 16 22 C 0.00 -0.14 5.04 85.37 0.43 0.29 16 23 N -0.82 -45.96 12.57 21.88 0.27 -45.69 16 24 Si 1.11 46.28 29.98 68.60 2.06 48.33 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 26 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 27 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 28 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 29 H 0.14 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 31 H 0.15 2.20 8.00 -2.39 -0.02 2.18 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.12 3.59 7.56 -2.39 -0.02 3.57 16 34 H 0.41 12.94 5.83 -92.71 -0.54 12.40 16 35 H 0.12 4.25 6.41 -2.91 -0.02 4.23 16 36 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 37 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 38 H 0.09 4.80 6.93 -2.91 -0.02 4.78 16 39 H 0.28 16.43 6.54 -92.71 -0.61 15.83 16 Total: -1.00 -70.42 334.40 6.08 -64.34 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.74 Total: 35.23 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 4.00 Total: -13.27 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -1.82 Total: -72.29 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -0.23 Total: -47.91 kcal Atomic # 9 Polarization: -15.77 SS G_CDS: 1.34 Total: -14.43 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.06 Total: 48.33 kcal Total: -70.42 6.08 -64.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601390362.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.460 kcal (2) G-P(sol) polarization free energy of solvation -70.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds