Wall clock time and date at job start Tue Mar 31 2020 15:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 116.99773 * 2 1 4 4 O 1.20817 * 120.00464 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99377 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.46987 * 60.00062 * 5 3 2 7 7 C 1.53001 * 109.47253 * 299.99944 * 5 3 2 8 8 C 1.53005 * 109.46887 * 175.00231 * 7 5 3 9 9 F 1.39901 * 109.47113 * 294.99621 * 8 7 5 10 10 F 1.39899 * 109.46872 * 174.99689 * 8 7 5 11 11 N 1.46497 * 109.47013 * 179.97438 * 5 3 2 12 12 C 1.34776 * 120.00262 * 205.00152 * 11 5 3 13 13 O 1.21611 * 119.99988 * 359.97438 * 12 11 5 14 14 C 1.47440 * 120.00037 * 180.02562 * 12 11 5 15 15 C 1.39226 * 120.28022 * 355.37704 * 14 12 11 16 16 C 1.38217 * 120.08927 * 179.97438 * 15 14 12 17 17 C 1.38834 * 120.67882 * 0.02562 * 16 15 14 18 18 C 1.37594 * 120.56566 * 359.97438 * 17 16 15 19 19 C 1.40703 * 119.88552 * 359.74382 * 18 17 16 20 20 C 1.40894 * 120.33228 * 180.25825 * 19 18 17 21 21 H 1.07995 * 119.99633 * 215.80914 * 20 19 18 22 22 C 1.40268 * 119.99931 * 35.79838 * 20 19 18 23 23 N 1.30631 * 120.00310 * 8.99751 * 22 20 19 24 24 Si 1.86801 * 120.00049 * 188.99468 * 22 20 19 25 25 H 1.48501 * 109.46849 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46932 * 119.99936 * 24 22 20 27 27 H 1.48493 * 109.47367 * 240.00370 * 24 22 20 28 28 H 1.09009 * 109.46805 * 60.00419 * 1 2 3 29 29 H 1.09000 * 109.47275 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47506 * 300.00683 * 1 2 3 31 31 H 1.08999 * 109.46927 * 55.00229 * 7 5 3 32 32 H 1.09000 * 109.46898 * 294.99628 * 7 5 3 33 33 H 1.08999 * 109.47201 * 55.00274 * 8 7 5 34 34 H 0.97003 * 120.00028 * 25.00411 * 11 5 3 35 35 H 1.08003 * 119.95515 * 0.02562 * 15 14 12 36 36 H 1.08003 * 119.66496 * 179.97438 * 16 15 14 37 37 H 1.08002 * 119.71330 * 179.97438 * 17 16 15 38 38 H 1.08005 * 120.05871 * 179.97438 * 18 17 16 39 39 H 0.97001 * 120.00181 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9564 0.7804 -0.8892 7 6 4.1129 0.5814 1.2502 8 6 5.6414 0.5516 1.1895 9 9 6.0500 -0.2460 0.1151 10 9 6.1452 0.0213 2.3820 11 7 3.9818 2.6796 -0.0002 12 6 5.1875 3.0256 -0.4932 13 8 5.9308 2.1715 -0.9370 14 6 5.6058 4.4394 -0.4934 15 6 4.7241 5.4324 -0.0752 16 6 5.1205 6.7565 -0.0765 17 6 6.3959 7.1137 -0.4928 18 6 7.2894 6.1548 -0.9115 19 6 6.9128 4.7991 -0.9143 20 6 7.8221 3.8089 -1.3360 21 1 7.4669 2.9462 -1.8800 22 6 9.1886 3.9438 -1.0496 23 7 9.5973 4.8888 -0.2457 24 14 10.4240 2.7718 -1.8176 25 1 9.7110 1.7992 -2.6841 26 1 11.3955 3.5425 -2.6346 27 1 11.1475 2.0427 -0.7453 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.7311 -0.4385 1.2961 32 1 3.7952 1.1288 2.1376 33 1 6.0196 1.5649 1.0542 34 1 3.3891 3.3608 0.3542 35 1 3.7292 5.1676 0.2514 36 1 4.4308 7.5213 0.2489 37 1 6.6891 8.1531 -0.4878 38 1 8.2794 6.4418 -1.2341 39 1 10.5423 4.9818 -0.0473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601390367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:44 Heat of formation + Delta-G solvation = -201.054371 kcal Electronic energy + Delta-G solvation = -28658.888741 eV Core-core repulsion = 24202.273363 eV Total energy + Delta-G solvation = -4456.615378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.48409 -46.46238 -40.89119 -39.21466 -37.19647 -36.64191 -34.98334 -33.76037 -31.77673 -29.95723 -29.39545 -28.51401 -26.43166 -25.34343 -22.65589 -22.33275 -21.20325 -20.52392 -19.82019 -18.06135 -17.60856 -17.36800 -17.17303 -16.80310 -16.50570 -15.90018 -15.69922 -15.37763 -15.12212 -14.27669 -14.14763 -13.97285 -13.66298 -13.52063 -13.26810 -13.13316 -12.85388 -12.82482 -12.73318 -12.36895 -12.21685 -12.16874 -11.77175 -11.59546 -11.17639 -11.12857 -11.06337 -10.88172 -10.69337 -10.58471 -10.29504 -10.16078 -9.73301 -9.33484 -8.83027 -8.57026 -7.67605 -7.41974 -6.86819 -4.47717 1.90681 2.18284 2.32675 2.75980 3.10033 3.18388 3.20629 3.57069 3.91114 3.95408 4.04181 4.45799 4.56861 4.64037 4.77558 4.85072 4.88743 4.93757 5.18161 5.26751 5.43931 5.54749 5.72051 5.77616 5.94831 6.00792 6.06113 6.23870 6.51662 6.68933 6.87952 7.05024 7.14509 7.38529 7.45588 7.54374 7.79310 7.89538 8.09533 8.15271 8.59608 8.75293 8.81521 9.12786 10.08628 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012174 B = 0.004900 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.454527 B = 5712.356654 C = 7268.187186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.465 3.535 4 O -0.495 6.495 5 C 0.162 3.838 6 H 0.134 0.866 7 C -0.177 4.177 8 C 0.264 3.736 9 F -0.192 7.192 10 F -0.215 7.215 11 N -0.738 5.738 12 C 0.563 3.437 13 O -0.526 6.526 14 C -0.265 4.265 15 C -0.055 4.055 16 C -0.242 4.242 17 C -0.094 4.094 18 C -0.145 4.145 19 C 0.149 3.851 20 C -0.421 4.421 21 H 0.114 0.886 22 C 0.070 3.930 23 N -0.789 5.789 24 Si 0.914 3.086 25 H -0.255 1.255 26 H -0.273 1.273 27 H -0.273 1.273 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.405 0.595 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.433 -6.929 2.523 13.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.307 3.693 4 O -0.382 6.382 5 C 0.054 3.946 6 H 0.151 0.849 7 C -0.217 4.217 8 C 0.210 3.790 9 F -0.173 7.173 10 F -0.196 7.196 11 N -0.397 5.397 12 C 0.359 3.641 13 O -0.404 6.404 14 C -0.270 4.270 15 C -0.073 4.073 16 C -0.261 4.261 17 C -0.113 4.113 18 C -0.164 4.164 19 C 0.145 3.855 20 C -0.449 4.449 21 H 0.131 0.869 22 C -0.149 4.149 23 N -0.414 5.414 24 Si 0.738 3.262 25 H -0.178 1.178 26 H -0.199 1.199 27 H -0.198 1.198 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.143 0.857 34 H 0.243 0.757 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.134 0.866 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.890 -7.195 2.302 13.254 hybrid contribution 0.018 -0.043 0.095 0.106 sum -10.872 -7.239 2.397 13.280 Atomic orbital electron populations 1.23318 0.75922 1.03877 1.02750 1.86508 1.23680 1.32799 1.83949 1.23620 0.91605 0.81719 0.72388 1.90677 1.66624 1.36244 1.44625 1.20060 0.86330 0.86893 1.01335 0.84850 1.23049 0.95258 1.03941 0.99421 1.21962 0.91938 0.94046 0.71022 1.92979 1.91848 1.76513 1.55995 1.92940 1.89131 1.89203 1.48330 1.46081 1.20395 1.05743 1.67491 1.18577 0.79205 0.89993 0.76324 1.90760 1.51583 1.51704 1.46397 1.19274 0.99115 0.89564 1.19087 1.20691 0.96453 0.93314 0.96880 1.20307 0.97298 0.95021 1.13481 1.20826 0.93999 0.97726 0.98747 1.21348 0.98987 0.92340 1.03709 1.17463 0.89595 0.92448 0.85993 1.20389 0.90228 1.06321 1.27934 0.86868 1.26155 0.99801 0.95563 0.93380 1.69717 1.17758 1.28341 1.25611 0.86140 0.79501 0.80636 0.79944 1.17789 1.19873 1.19824 0.91686 0.87867 0.91731 0.87817 0.88230 0.85700 0.75686 0.89038 0.88979 0.88991 0.86591 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.34 16 2 O -0.35 -3.92 10.37 -39.25 -0.41 -4.32 16 3 C 0.47 6.13 7.32 36.01 0.26 6.39 16 4 O -0.50 -7.47 15.59 -18.74 -0.29 -7.76 16 5 C 0.16 2.31 2.73 -69.08 -0.19 2.12 16 6 H 0.13 2.02 7.25 -51.93 -0.38 1.65 16 7 C -0.18 -2.31 5.08 -26.73 -0.14 -2.45 16 8 C 0.26 4.45 4.40 37.16 0.16 4.62 16 9 F -0.19 -3.60 15.93 2.25 0.04 -3.57 16 10 F -0.21 -3.65 17.34 2.25 0.04 -3.62 16 11 N -0.74 -12.32 4.85 -56.00 -0.27 -12.59 16 12 C 0.56 11.79 6.28 -12.51 -0.08 11.71 16 13 O -0.53 -12.13 10.01 5.27 0.05 -12.08 16 14 C -0.27 -6.10 5.92 -104.36 -0.62 -6.72 16 15 C -0.05 -1.12 9.52 -39.22 -0.37 -1.50 16 16 C -0.24 -4.98 10.03 -39.37 -0.39 -5.38 16 17 C -0.09 -2.05 10.01 -39.60 -0.40 -2.44 16 18 C -0.14 -3.53 8.62 -38.89 -0.34 -3.86 16 19 C 0.15 3.80 5.48 -106.54 -0.58 3.21 16 20 C -0.42 -10.96 7.78 -37.81 -0.29 -11.26 16 21 H 0.11 3.05 5.73 -52.49 -0.30 2.75 16 22 C 0.07 1.73 5.25 -17.30 -0.09 1.64 16 23 N -0.79 -19.75 11.25 55.56 0.63 -19.12 16 24 Si 0.91 19.19 29.57 -169.99 -5.03 14.16 16 25 H -0.25 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 27 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 28 H 0.06 0.51 8.13 -51.92 -0.42 0.09 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 31 H 0.10 1.15 7.99 -51.93 -0.42 0.73 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.13 2.43 5.19 -51.93 -0.27 2.16 16 34 H 0.41 6.39 5.84 -40.82 -0.24 6.15 16 35 H 0.09 1.61 6.42 -52.48 -0.34 1.27 16 36 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.12 2.90 6.72 -52.48 -0.35 2.55 16 39 H 0.28 6.44 8.29 -40.82 -0.34 6.11 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -28.85 337.33 -6.12 -34.96 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -3.96 Total: 11.42 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.00 Total: -2.58 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.35 Total: -31.71 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.65 Total: -24.16 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 0.07 Total: -7.18 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.85 -6.12 -34.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601390367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.090 kcal (2) G-P(sol) polarization free energy of solvation -28.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds