Wall clock time and date at job start Tue Mar 31 2020 15:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 116.99773 * 2 1 4 4 O 1.20817 * 120.00464 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99377 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.46987 * 60.00062 * 5 3 2 7 7 C 1.53001 * 109.47253 * 299.99944 * 5 3 2 8 8 C 1.53005 * 109.46887 * 175.00231 * 7 5 3 9 9 F 1.39901 * 109.47113 * 294.99621 * 8 7 5 10 10 F 1.39899 * 109.46872 * 174.99689 * 8 7 5 11 11 N 1.46497 * 109.47013 * 179.97438 * 5 3 2 12 12 C 1.34776 * 120.00262 * 205.00152 * 11 5 3 13 13 O 1.21611 * 119.99988 * 359.97438 * 12 11 5 14 14 C 1.47440 * 120.00037 * 180.02562 * 12 11 5 15 15 C 1.39226 * 120.28022 * 355.37704 * 14 12 11 16 16 C 1.38217 * 120.08927 * 179.97438 * 15 14 12 17 17 C 1.38834 * 120.67882 * 0.02562 * 16 15 14 18 18 C 1.37594 * 120.56566 * 359.97438 * 17 16 15 19 19 C 1.40703 * 119.88552 * 359.74382 * 18 17 16 20 20 C 1.40894 * 120.33228 * 180.25825 * 19 18 17 21 21 H 1.07995 * 119.99633 * 215.80914 * 20 19 18 22 22 C 1.40268 * 119.99931 * 35.79838 * 20 19 18 23 23 N 1.30631 * 120.00310 * 8.99751 * 22 20 19 24 24 Si 1.86801 * 120.00049 * 188.99468 * 22 20 19 25 25 H 1.48501 * 109.46849 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46932 * 119.99936 * 24 22 20 27 27 H 1.48493 * 109.47367 * 240.00370 * 24 22 20 28 28 H 1.09009 * 109.46805 * 60.00419 * 1 2 3 29 29 H 1.09000 * 109.47275 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47506 * 300.00683 * 1 2 3 31 31 H 1.08999 * 109.46927 * 55.00229 * 7 5 3 32 32 H 1.09000 * 109.46898 * 294.99628 * 7 5 3 33 33 H 1.08999 * 109.47201 * 55.00274 * 8 7 5 34 34 H 0.97003 * 120.00028 * 25.00411 * 11 5 3 35 35 H 1.08003 * 119.95515 * 0.02562 * 15 14 12 36 36 H 1.08003 * 119.66496 * 179.97438 * 16 15 14 37 37 H 1.08002 * 119.71330 * 179.97438 * 17 16 15 38 38 H 1.08005 * 120.05871 * 179.97438 * 18 17 16 39 39 H 0.97001 * 120.00181 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9564 0.7804 -0.8892 7 6 4.1129 0.5814 1.2502 8 6 5.6414 0.5516 1.1895 9 9 6.0500 -0.2460 0.1151 10 9 6.1452 0.0213 2.3820 11 7 3.9818 2.6796 -0.0002 12 6 5.1875 3.0256 -0.4932 13 8 5.9308 2.1715 -0.9370 14 6 5.6058 4.4394 -0.4934 15 6 4.7241 5.4324 -0.0752 16 6 5.1205 6.7565 -0.0765 17 6 6.3959 7.1137 -0.4928 18 6 7.2894 6.1548 -0.9115 19 6 6.9128 4.7991 -0.9143 20 6 7.8221 3.8089 -1.3360 21 1 7.4669 2.9462 -1.8800 22 6 9.1886 3.9438 -1.0496 23 7 9.5973 4.8888 -0.2457 24 14 10.4240 2.7718 -1.8176 25 1 9.7110 1.7992 -2.6841 26 1 11.3955 3.5425 -2.6346 27 1 11.1475 2.0427 -0.7453 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.7311 -0.4385 1.2961 32 1 3.7952 1.1288 2.1376 33 1 6.0196 1.5649 1.0542 34 1 3.3891 3.3608 0.3542 35 1 3.7292 5.1676 0.2514 36 1 4.4308 7.5213 0.2489 37 1 6.6891 8.1531 -0.4878 38 1 8.2794 6.4418 -1.2341 39 1 10.5423 4.9818 -0.0473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601390367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:43 Heat of formation + Delta-G solvation = -217.442864 kcal Electronic energy + Delta-G solvation = -28659.599399 eV Core-core repulsion = 24202.273363 eV Total energy + Delta-G solvation = -4457.326037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -49.87590 -47.87037 -41.98044 -40.73416 -38.78467 -37.74008 -36.38731 -35.53139 -33.22237 -31.72431 -31.03852 -29.41649 -27.66980 -26.98617 -24.22199 -23.56204 -22.83333 -21.82787 -21.33943 -19.56129 -18.99326 -18.73551 -18.41088 -18.11566 -17.68685 -17.36473 -17.07983 -16.86819 -16.49158 -15.92308 -15.61096 -15.49172 -15.02185 -14.83598 -14.54352 -14.48423 -14.39837 -14.23538 -14.13490 -13.76851 -13.53319 -13.42131 -13.10421 -12.92351 -12.86684 -12.71733 -12.44387 -12.32602 -12.07091 -11.91819 -11.86168 -11.54360 -11.45528 -11.13628 -10.33262 -10.25126 -9.41910 -9.21549 -8.67537 -6.36523 0.47558 0.86777 1.01833 1.28039 1.36316 1.48651 1.51292 2.20764 2.22823 2.28006 2.79325 2.83757 3.27653 3.41130 3.60446 3.70630 3.73723 3.96248 4.19627 4.29761 4.34704 4.35743 4.36422 4.54651 4.59904 4.67002 4.73107 4.88870 5.09207 5.13673 5.22049 5.32884 5.38168 5.62039 5.81947 6.04563 6.11894 6.34243 6.45108 6.57159 6.75779 6.91202 6.98480 7.50086 8.30349 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012174 B = 0.004900 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.454527 B = 5712.356654 C = 7268.187186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.478 3.522 4 O -0.514 6.514 5 C 0.159 3.841 6 H 0.124 0.876 7 C -0.163 4.163 8 C 0.261 3.739 9 F -0.206 7.206 10 F -0.216 7.216 11 N -0.723 5.723 12 C 0.565 3.435 13 O -0.551 6.551 14 C -0.279 4.279 15 C -0.054 4.054 16 C -0.236 4.236 17 C -0.091 4.091 18 C -0.174 4.174 19 C 0.122 3.878 20 C -0.457 4.457 21 H 0.093 0.907 22 C 0.036 3.964 23 N -0.820 5.820 24 Si 0.971 3.029 25 H -0.267 1.267 26 H -0.258 1.258 27 H -0.269 1.269 28 H 0.063 0.937 29 H 0.136 0.864 30 H 0.070 0.930 31 H 0.132 0.868 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.412 0.588 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.980 -7.261 3.485 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.321 3.679 4 O -0.403 6.403 5 C 0.052 3.948 6 H 0.142 0.858 7 C -0.202 4.202 8 C 0.207 3.793 9 F -0.187 7.187 10 F -0.197 7.197 11 N -0.381 5.381 12 C 0.360 3.640 13 O -0.431 6.431 14 C -0.284 4.284 15 C -0.072 4.072 16 C -0.255 4.255 17 C -0.109 4.109 18 C -0.194 4.194 19 C 0.118 3.882 20 C -0.486 4.486 21 H 0.111 0.889 22 C -0.179 4.179 23 N -0.446 5.446 24 Si 0.793 3.207 25 H -0.191 1.191 26 H -0.182 1.182 27 H -0.194 1.194 28 H 0.082 0.918 29 H 0.154 0.846 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.139 0.861 33 H 0.113 0.887 34 H 0.251 0.749 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.476 -7.531 3.277 15.782 hybrid contribution 0.562 0.078 -0.148 0.586 sum -12.914 -7.453 3.130 15.235 Atomic orbital electron populations 1.23687 0.73699 1.06194 1.03005 1.86493 1.25682 1.31206 1.83253 1.23112 0.90681 0.82136 0.72013 1.90675 1.66810 1.37009 1.45777 1.20118 0.87812 0.85131 1.01730 0.85834 1.22982 0.91854 1.05856 0.99474 1.21970 0.94375 0.92377 0.70547 1.92950 1.92296 1.76675 1.56793 1.92933 1.89485 1.89069 1.48223 1.45768 1.18952 1.07310 1.66103 1.18361 0.80167 0.89170 0.76298 1.90752 1.52738 1.52134 1.47450 1.19678 0.98809 0.91521 1.18392 1.21066 0.97527 0.92928 0.95720 1.20781 0.97163 0.95941 1.11571 1.21174 0.94070 0.98547 0.97148 1.21293 0.99209 0.92791 1.06074 1.17800 0.90871 0.92929 0.86582 1.20308 0.91519 1.06493 1.30277 0.88898 1.26730 1.00772 0.96900 0.93528 1.69741 1.18322 1.29776 1.26809 0.85313 0.77612 0.78715 0.79096 1.19113 1.18184 1.19432 0.91818 0.84593 0.91145 0.84968 0.86114 0.88700 0.74852 0.85494 0.85267 0.86356 0.88370 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.35 -6.68 10.37 -51.39 -0.53 -7.21 16 3 C 0.48 11.38 7.32 71.24 0.52 11.90 16 4 O -0.51 -14.16 15.59 21.99 0.34 -13.82 16 5 C 0.16 4.30 2.73 44.25 0.12 4.42 16 6 H 0.12 3.68 7.25 -2.38 -0.02 3.66 16 7 C -0.16 -3.91 5.08 30.60 0.16 -3.75 16 8 C 0.26 8.75 4.40 71.98 0.32 9.07 16 9 F -0.21 -7.81 15.93 44.97 0.72 -7.09 16 10 F -0.22 -7.22 17.34 44.97 0.78 -6.44 16 11 N -0.72 -23.28 4.85 -449.35 -2.18 -25.46 16 12 C 0.57 23.94 6.28 86.67 0.54 24.48 16 13 O -0.55 -26.36 10.01 -4.07 -0.04 -26.40 16 14 C -0.28 -12.91 5.92 -19.70 -0.12 -13.03 16 15 C -0.05 -2.11 9.52 22.50 0.21 -1.89 16 16 C -0.24 -9.04 10.03 22.41 0.22 -8.82 16 17 C -0.09 -3.85 10.01 22.26 0.22 -3.63 16 18 C -0.17 -8.73 8.62 22.72 0.20 -8.54 16 19 C 0.12 6.43 5.48 -21.11 -0.12 6.32 16 20 C -0.46 -25.16 7.78 23.41 0.18 -24.97 16 21 H 0.09 5.35 5.73 -2.91 -0.02 5.34 16 22 C 0.04 1.87 5.25 85.37 0.45 2.32 16 23 N -0.82 -42.79 11.25 21.88 0.25 -42.54 16 24 Si 0.97 41.08 29.57 68.60 2.03 43.10 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H 0.06 0.83 8.13 -2.38 -0.02 0.81 16 29 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 31 H 0.13 2.49 7.99 -2.39 -0.02 2.47 16 32 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.10 3.79 5.19 -2.39 -0.01 3.78 16 34 H 0.41 12.06 5.84 -92.71 -0.54 11.52 16 35 H 0.13 4.00 6.42 -2.91 -0.02 3.98 16 36 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 37 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 38 H 0.10 5.16 6.72 -2.91 -0.02 5.14 16 39 H 0.29 13.65 8.29 -92.71 -0.77 12.88 16 Total: -1.00 -65.40 337.33 6.05 -59.35 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.58 Total: 31.11 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 4.11 Total: -4.59 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -1.93 Total: -68.00 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -0.23 Total: -47.43 kcal Atomic # 9 Polarization: -15.03 SS G_CDS: 1.50 Total: -13.53 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Total: -65.40 6.05 -59.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601390367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.098 kcal (2) G-P(sol) polarization free energy of solvation -65.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds