Wall clock time and date at job start Tue Mar 31 2020 14:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.43760 * 2 1 4 4 C 1.50822 * 109.40327 * 240.10285 * 2 1 3 5 5 C 1.38861 * 117.76823 * 70.87981 * 4 2 1 6 6 C 1.37917 * 120.54335 * 180.65647 * 5 4 2 7 7 C 1.38487 * 119.68796 * 359.96879 * 6 5 4 8 8 F 1.35103 * 120.11147 * 179.79743 * 7 6 5 9 9 C 1.38127 * 119.77311 * 359.59248 * 7 6 5 10 10 C 1.37687 * 122.34338 * 251.12699 * 4 2 1 11 11 C 1.50606 * 122.87414 * 359.11356 * 10 4 2 12 12 C 1.52788 * 110.85868 * 19.79066 * 11 10 4 13 13 N 1.46691 * 109.43691 * 119.92050 * 2 1 3 14 14 S 1.65601 * 121.34160 * 255.69641 * 13 2 1 15 15 O 1.42102 * 104.27889 * 26.04596 * 14 13 2 16 16 O 1.42095 * 104.27500 * 153.90660 * 14 13 2 17 17 C 1.81409 * 104.44770 * 269.97638 * 14 13 2 18 18 C 1.53001 * 109.47065 * 180.02562 * 17 14 13 19 19 C 1.50700 * 109.47256 * 180.02562 * 18 17 14 20 20 H 1.08000 * 119.99394 * 359.97438 * 19 18 17 21 21 C 1.37868 * 120.00022 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00307 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99962 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46982 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46830 * 120.00217 * 23 21 19 26 26 H 1.48496 * 109.47244 * 240.00327 * 23 21 19 27 27 H 1.09004 * 109.46464 * 300.08090 * 1 2 3 28 28 H 1.08992 * 109.47024 * 60.07765 * 1 2 3 29 29 H 1.09000 * 109.47162 * 180.08493 * 1 2 3 30 30 H 1.07996 * 119.72609 * 0.62395 * 5 4 2 31 31 H 1.07998 * 120.15372 * 179.97438 * 6 5 4 32 32 H 1.08006 * 119.71480 * 180.25846 * 9 7 6 33 33 H 1.09000 * 109.19876 * 140.14657 * 11 10 4 34 34 H 1.08998 * 109.19839 * 259.47943 * 11 10 4 35 35 H 1.08999 * 109.77492 * 72.16546 * 12 11 10 36 36 H 1.08996 * 109.77375 * 192.96780 * 12 11 10 37 37 H 1.09006 * 109.46835 * 300.00281 * 17 14 13 38 38 H 1.08998 * 109.46933 * 59.99932 * 17 14 13 39 39 H 1.09005 * 109.46704 * 299.99974 * 18 17 14 40 40 H 1.09000 * 109.47304 * 59.99606 * 18 17 14 41 41 H 0.96997 * 119.99847 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0310 -0.7091 -1.2332 5 6 1.8664 -0.0734 -2.4568 6 6 2.2912 -0.6759 -3.6224 7 6 2.8874 -1.9248 -3.5711 8 9 3.3031 -2.5247 -4.7081 9 6 3.0595 -2.5532 -2.3531 10 6 2.6307 -1.9473 -1.1785 11 6 2.8556 -2.6904 0.1120 12 6 1.9376 -2.1600 1.2122 13 7 2.0181 -0.6900 1.1989 14 16 2.6343 0.1507 2.4858 15 8 2.0104 1.4248 2.4031 16 8 2.4128 -0.7026 3.6002 17 6 4.4080 0.2862 2.1304 18 6 5.0976 1.0522 3.2611 19 6 6.5711 1.1654 2.9656 20 1 6.9752 0.7337 2.0619 21 6 7.4030 1.8200 3.8489 22 7 6.9109 2.3452 4.9496 23 14 9.2295 1.9596 3.4830 24 1 9.5282 1.2900 2.1916 25 1 9.6088 3.3928 3.3963 26 1 10.0034 1.3076 4.5698 27 1 -0.3632 0.5151 0.8893 28 1 -0.3633 0.5126 -0.8906 29 1 -0.3633 -1.0277 0.0015 30 1 1.4013 0.9005 -2.4960 31 1 2.1596 -0.1761 -4.5706 32 1 3.5284 -3.5254 -2.3138 33 1 2.6528 -3.7499 -0.0444 34 1 3.8934 -2.5660 0.4210 35 1 0.9119 -2.4749 1.0203 36 1 2.2655 -2.5387 2.1803 37 1 4.8400 -0.7114 2.0516 38 1 4.5505 0.8192 1.1903 39 1 4.6656 2.0499 3.3403 40 1 4.9551 0.5190 4.2010 41 1 7.4963 2.8054 5.5712 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610006596.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:16 Heat of formation + Delta-G solvation = -102.864294 kcal Electronic energy + Delta-G solvation = -26134.543958 eV Core-core repulsion = 22248.399597 eV Total energy + Delta-G solvation = -3886.144361 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.07831 -40.31663 -36.82753 -36.74455 -35.48847 -33.92744 -33.73374 -31.26246 -31.18223 -29.92430 -27.99559 -25.61993 -24.07749 -23.76429 -22.40665 -21.68632 -20.22890 -18.43503 -17.81491 -17.36616 -16.75557 -16.50950 -16.26571 -15.81230 -15.47490 -15.34407 -14.90710 -14.60012 -14.50834 -14.10847 -13.68989 -13.54130 -13.43721 -13.26815 -12.94628 -12.61780 -12.49492 -12.20945 -12.04676 -11.78620 -11.67665 -11.64858 -11.62025 -11.44664 -11.11070 -11.00958 -10.98004 -10.79673 -10.41657 -10.41298 -9.80625 -9.39967 -9.13510 -8.89111 -8.68700 -8.52552 -6.14424 -4.19954 0.67595 0.90940 0.97131 2.90508 3.24022 3.29150 3.31535 3.34950 3.99417 4.20641 4.31501 4.33803 4.38202 4.52828 4.61757 4.78417 4.86426 4.89811 5.05198 5.15080 5.20924 5.21712 5.24629 5.33232 5.49935 5.60857 5.62686 5.69021 5.70770 5.76951 5.84722 5.88953 5.99533 6.02809 6.11601 6.37790 6.46137 6.58103 6.66234 7.27230 7.32934 7.78925 8.15434 8.83721 9.45139 10.96634 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.003941 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.112530 B = 7103.972259 C = 8436.046473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.194 3.806 3 H 0.107 0.893 4 C -0.094 4.094 5 C -0.082 4.082 6 C -0.156 4.156 7 C 0.097 3.903 8 F -0.142 7.142 9 C -0.156 4.156 10 C -0.032 4.032 11 C -0.105 4.105 12 C 0.120 3.880 13 N -1.004 6.004 14 S 2.591 3.409 15 O -0.961 6.961 16 O -0.961 6.961 17 C -0.588 4.588 18 C 0.028 3.972 19 C -0.519 4.519 20 H 0.062 0.938 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.202 -9.466 -15.415 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.087 3.913 3 H 0.125 0.875 4 C -0.096 4.096 5 C -0.101 4.101 6 C -0.175 4.175 7 C 0.078 3.922 8 F -0.121 7.121 9 C -0.175 4.175 10 C -0.033 4.033 11 C -0.143 4.143 12 C -0.005 4.005 13 N -0.839 5.839 14 S 2.690 3.310 15 O -0.951 6.951 16 O -0.952 6.952 17 C -0.721 4.721 18 C -0.011 4.011 19 C -0.559 4.559 20 H 0.080 0.920 21 C -0.144 4.144 22 N -0.528 5.528 23 Si 0.726 3.274 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.698 -9.085 -14.532 21.329 hybrid contribution 1.734 -0.158 -0.963 1.990 sum -10.964 -9.243 -15.495 21.112 Atomic orbital electron populations 1.22148 0.93786 1.02620 1.02952 1.19648 0.94779 0.95569 0.81303 0.87521 1.19900 0.99801 0.94847 0.95064 1.20954 0.98409 0.99950 0.90758 1.21046 1.01900 0.94568 0.99965 1.17601 0.99786 0.92820 0.82041 1.91496 1.88240 1.83366 1.48997 1.21157 1.03776 1.01718 0.90837 1.19302 0.95982 0.93572 0.94417 1.20970 1.01794 0.99486 0.92071 1.21382 1.00314 0.79134 0.99688 1.58224 1.77615 1.15261 1.32760 1.05758 0.78627 0.73531 0.73062 1.93539 1.74473 1.41429 1.85691 1.93534 1.85580 1.67095 1.48945 1.30499 1.20511 1.10169 1.10970 1.18972 0.96883 0.94902 0.90345 1.21028 0.91444 1.36487 1.06898 0.92021 1.25058 0.99247 0.95181 0.94939 1.69961 1.35734 1.36381 1.10763 0.86427 0.84622 0.77945 0.78386 1.19656 1.20771 1.20766 0.91157 0.91386 0.92082 0.84647 0.84690 0.84784 0.89226 0.89232 0.90504 0.87867 0.86296 0.86296 0.94872 0.94865 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.25 37.16 0.34 -1.19 16 2 C 0.19 2.21 2.63 -68.92 -0.18 2.03 16 3 H 0.11 1.25 7.40 -51.93 -0.38 0.87 16 4 C -0.09 -0.99 5.17 -104.53 -0.54 -1.53 16 5 C -0.08 -0.75 9.24 -39.47 -0.36 -1.12 16 6 C -0.16 -1.45 10.04 -39.61 -0.40 -1.85 16 7 C 0.10 1.01 7.30 -39.53 -0.29 0.72 16 8 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 9 C -0.16 -1.55 9.57 -39.36 -0.38 -1.93 16 10 C -0.03 -0.33 5.76 -104.61 -0.60 -0.93 16 11 C -0.10 -0.95 5.86 -28.04 -0.16 -1.12 16 12 C 0.12 1.26 6.28 -3.75 -0.02 1.23 16 13 N -1.00 -13.01 2.83 -107.91 -0.31 -13.32 16 14 S 2.59 45.21 5.44 -107.50 -0.59 44.63 16 15 O -0.96 -19.11 16.93 -57.54 -0.97 -20.09 16 16 O -0.96 -19.09 16.69 -57.54 -0.96 -20.05 16 17 C -0.59 -11.08 6.12 37.16 0.23 -10.85 16 18 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 19 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 23 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.53 7.90 -51.93 -0.41 0.12 16 29 H 0.06 0.55 7.36 -51.93 -0.38 0.17 16 30 H 0.14 0.95 8.05 -52.49 -0.42 0.53 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.13 1.12 8.05 -52.48 -0.42 0.69 16 33 H 0.09 0.60 8.11 -51.93 -0.42 0.18 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.68 7.35 -51.93 -0.38 0.30 16 36 H 0.10 1.10 6.99 -51.93 -0.36 0.74 16 37 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 38 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 354.24 15.07 5.34 5.34 Total: -1.00 -34.00 354.24 -10.34 -44.34 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.69 Total: -0.86 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: -2.92 Total: -28.97 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.43 Total: -38.86 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -1.93 Total: -40.14 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 45.21 SS G_CDS: -0.59 Total: 44.63 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.00 -10.34 -44.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610006596.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.526 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds