Wall clock time and date at job start Tue Mar 31 2020 14:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.43760 * 2 1 4 4 C 1.50822 * 109.40327 * 240.10285 * 2 1 3 5 5 C 1.38861 * 117.76823 * 70.87981 * 4 2 1 6 6 C 1.37917 * 120.54335 * 180.65647 * 5 4 2 7 7 C 1.38487 * 119.68796 * 359.96879 * 6 5 4 8 8 F 1.35103 * 120.11147 * 179.79743 * 7 6 5 9 9 C 1.38127 * 119.77311 * 359.59248 * 7 6 5 10 10 C 1.37687 * 122.34338 * 251.12699 * 4 2 1 11 11 C 1.50606 * 122.87414 * 359.11356 * 10 4 2 12 12 C 1.52788 * 110.85868 * 19.79066 * 11 10 4 13 13 N 1.46691 * 109.43691 * 119.92050 * 2 1 3 14 14 S 1.65601 * 121.34160 * 255.69641 * 13 2 1 15 15 O 1.42102 * 104.27889 * 26.04596 * 14 13 2 16 16 O 1.42095 * 104.27500 * 153.90660 * 14 13 2 17 17 C 1.81409 * 104.44770 * 269.97638 * 14 13 2 18 18 C 1.53001 * 109.47065 * 180.02562 * 17 14 13 19 19 C 1.50700 * 109.47256 * 180.02562 * 18 17 14 20 20 H 1.08000 * 119.99394 * 359.97438 * 19 18 17 21 21 C 1.37868 * 120.00022 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00307 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99962 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46982 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46830 * 120.00217 * 23 21 19 26 26 H 1.48496 * 109.47244 * 240.00327 * 23 21 19 27 27 H 1.09004 * 109.46464 * 300.08090 * 1 2 3 28 28 H 1.08992 * 109.47024 * 60.07765 * 1 2 3 29 29 H 1.09000 * 109.47162 * 180.08493 * 1 2 3 30 30 H 1.07996 * 119.72609 * 0.62395 * 5 4 2 31 31 H 1.07998 * 120.15372 * 179.97438 * 6 5 4 32 32 H 1.08006 * 119.71480 * 180.25846 * 9 7 6 33 33 H 1.09000 * 109.19876 * 140.14657 * 11 10 4 34 34 H 1.08998 * 109.19839 * 259.47943 * 11 10 4 35 35 H 1.08999 * 109.77492 * 72.16546 * 12 11 10 36 36 H 1.08996 * 109.77375 * 192.96780 * 12 11 10 37 37 H 1.09006 * 109.46835 * 300.00281 * 17 14 13 38 38 H 1.08998 * 109.46933 * 59.99932 * 17 14 13 39 39 H 1.09005 * 109.46704 * 299.99974 * 18 17 14 40 40 H 1.09000 * 109.47304 * 59.99606 * 18 17 14 41 41 H 0.96997 * 119.99847 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0310 -0.7091 -1.2332 5 6 1.8664 -0.0734 -2.4568 6 6 2.2912 -0.6759 -3.6224 7 6 2.8874 -1.9248 -3.5711 8 9 3.3031 -2.5247 -4.7081 9 6 3.0595 -2.5532 -2.3531 10 6 2.6307 -1.9473 -1.1785 11 6 2.8556 -2.6904 0.1120 12 6 1.9376 -2.1600 1.2122 13 7 2.0181 -0.6900 1.1989 14 16 2.6343 0.1507 2.4858 15 8 2.0104 1.4248 2.4031 16 8 2.4128 -0.7026 3.6002 17 6 4.4080 0.2862 2.1304 18 6 5.0976 1.0522 3.2611 19 6 6.5711 1.1654 2.9656 20 1 6.9752 0.7337 2.0619 21 6 7.4030 1.8200 3.8489 22 7 6.9109 2.3452 4.9496 23 14 9.2295 1.9596 3.4830 24 1 9.5282 1.2900 2.1916 25 1 9.6088 3.3928 3.3963 26 1 10.0034 1.3076 4.5698 27 1 -0.3632 0.5151 0.8893 28 1 -0.3633 0.5126 -0.8906 29 1 -0.3633 -1.0277 0.0015 30 1 1.4013 0.9005 -2.4960 31 1 2.1596 -0.1761 -4.5706 32 1 3.5284 -3.5254 -2.3138 33 1 2.6528 -3.7499 -0.0444 34 1 3.8934 -2.5660 0.4210 35 1 0.9119 -2.4749 1.0203 36 1 2.2655 -2.5387 2.1803 37 1 4.8400 -0.7114 2.0516 38 1 4.5505 0.8192 1.1903 39 1 4.6656 2.0499 3.3403 40 1 4.9551 0.5190 4.2010 41 1 7.4963 2.8054 5.5712 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610006596.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:15 Heat of formation + Delta-G solvation = -124.217972 kcal Electronic energy + Delta-G solvation = -26135.469923 eV Core-core repulsion = 22248.399597 eV Total energy + Delta-G solvation = -3887.070326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.87376 -41.09908 -38.25554 -37.70136 -37.00375 -35.90477 -34.51751 -33.13102 -32.11815 -30.67682 -28.81967 -27.58555 -24.88047 -24.61700 -23.55327 -23.12166 -21.24600 -19.64258 -19.11459 -18.47837 -18.16199 -17.62382 -17.17475 -16.97462 -16.61062 -16.53495 -16.50657 -15.87449 -15.38372 -15.15752 -14.92777 -14.49891 -14.45207 -14.34362 -14.06319 -13.74494 -13.73480 -13.43874 -13.23838 -13.20162 -12.96623 -12.94562 -12.81036 -12.77918 -12.60312 -12.27711 -12.26537 -12.12438 -11.87417 -11.75140 -11.59407 -11.13545 -10.66255 -10.09928 -9.79326 -9.46383 -8.26921 -6.40792 -0.74789 0.14948 0.26839 1.40254 1.40467 1.53763 1.67767 2.37108 2.55893 2.82524 3.06529 3.11832 3.26137 3.47464 3.70123 3.84065 3.88763 4.06002 4.06782 4.12177 4.17908 4.26120 4.35174 4.50474 4.52313 4.62458 4.73905 4.77019 4.91685 4.95181 5.01928 5.12343 5.14896 5.20308 5.25537 5.26635 5.28631 5.35182 5.55562 5.67640 5.69009 5.94084 6.05711 6.72727 7.29558 8.85500 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.003941 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.112530 B = 7103.972259 C = 8436.046473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.187 3.813 3 H 0.101 0.899 4 C -0.103 4.103 5 C -0.082 4.082 6 C -0.156 4.156 7 C 0.080 3.920 8 F -0.150 7.150 9 C -0.159 4.159 10 C -0.040 4.040 11 C -0.103 4.103 12 C 0.112 3.888 13 N -0.995 5.995 14 S 2.617 3.383 15 O -0.988 6.988 16 O -0.987 6.987 17 C -0.589 4.589 18 C 0.022 3.978 19 C -0.537 4.537 20 H 0.073 0.927 21 C -0.002 4.002 22 N -0.933 5.933 23 Si 0.972 3.028 24 H -0.258 1.258 25 H -0.278 1.278 26 H -0.277 1.277 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.006 0.994 40 H 0.007 0.993 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.088 -10.572 -17.620 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.081 3.919 3 H 0.118 0.882 4 C -0.105 4.105 5 C -0.100 4.100 6 C -0.175 4.175 7 C 0.061 3.939 8 F -0.129 7.129 9 C -0.177 4.177 10 C -0.041 4.041 11 C -0.141 4.141 12 C -0.012 4.012 13 N -0.832 5.832 14 S 2.715 3.285 15 O -0.979 6.979 16 O -0.978 6.978 17 C -0.721 4.721 18 C -0.017 4.017 19 C -0.576 4.576 20 H 0.091 0.909 21 C -0.200 4.200 22 N -0.573 5.573 23 Si 0.796 3.204 24 H -0.181 1.181 25 H -0.203 1.203 26 H -0.202 1.202 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.174 0.826 31 H 0.171 0.829 32 H 0.166 0.834 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.158 0.842 38 H 0.153 0.847 39 H 0.024 0.976 40 H 0.026 0.974 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.572 -10.195 -16.743 23.287 hybrid contribution 1.607 0.150 -0.335 1.648 sum -10.965 -10.045 -17.078 22.644 Atomic orbital electron populations 1.22157 0.92446 1.03412 1.03324 1.19854 0.95878 0.95294 0.80864 0.88156 1.19891 1.00545 0.95157 0.94905 1.21182 0.98009 1.00668 0.90134 1.21279 1.01173 0.94194 1.00848 1.17863 1.00465 0.93496 0.82057 1.91477 1.88426 1.83568 1.49386 1.21301 1.03617 1.02306 0.90515 1.19432 0.96111 0.93661 0.94884 1.21003 1.01218 1.00953 0.90942 1.21679 1.02091 0.77165 1.00267 1.57835 1.76641 1.16432 1.32293 1.04669 0.77619 0.72874 0.73327 1.93496 1.74609 1.43351 1.86407 1.93493 1.85621 1.67628 1.51033 1.30420 1.22084 1.10496 1.09070 1.18815 0.97038 0.94120 0.91754 1.21512 0.92678 1.36216 1.07230 0.90897 1.26075 1.04536 0.94741 0.94655 1.70099 1.37714 1.37456 1.12011 0.85296 0.78282 0.78101 0.78766 1.18142 1.20321 1.20243 0.92734 0.89085 0.91080 0.82568 0.82925 0.83445 0.86426 0.89451 0.88386 0.88244 0.84245 0.84699 0.97569 0.97437 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.25 71.98 0.67 -2.06 16 2 C 0.19 3.95 2.63 44.25 0.12 4.07 16 3 H 0.10 2.24 7.40 -2.39 -0.02 2.22 16 4 C -0.10 -1.92 5.17 -19.81 -0.10 -2.02 16 5 C -0.08 -1.28 9.24 22.34 0.21 -1.07 16 6 C -0.16 -2.52 10.04 22.25 0.22 -2.29 16 7 C 0.08 1.51 7.30 22.30 0.16 1.68 16 8 F -0.15 -3.11 17.27 44.97 0.78 -2.33 16 9 C -0.16 -2.78 9.57 22.41 0.21 -2.56 16 10 C -0.04 -0.73 5.76 -19.85 -0.11 -0.84 16 11 C -0.10 -1.60 5.86 29.75 0.17 -1.43 16 12 C 0.11 2.12 6.28 86.17 0.54 2.66 16 13 N -0.99 -24.53 2.83 -495.32 -1.40 -25.93 16 14 S 2.62 91.90 5.44 -56.49 -0.31 91.60 16 15 O -0.99 -40.02 16.93 -127.65 -2.16 -42.18 16 16 O -0.99 -39.74 16.69 -127.65 -2.13 -41.87 16 17 C -0.59 -22.24 6.12 71.98 0.44 -21.80 16 18 C 0.02 1.13 4.98 29.85 0.15 1.28 16 19 C -0.54 -29.76 9.11 25.60 0.23 -29.52 16 20 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 21 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 22 N -0.93 -56.53 13.29 21.44 0.28 -56.25 16 23 Si 0.97 43.22 29.54 68.60 2.03 45.24 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.09 1.17 7.90 -2.39 -0.02 1.16 16 29 H 0.07 1.10 7.36 -2.39 -0.02 1.08 16 30 H 0.16 1.71 8.05 -2.91 -0.02 1.69 16 31 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.15 2.07 8.05 -2.91 -0.02 2.05 16 33 H 0.12 1.18 8.11 -2.39 -0.02 1.16 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.10 1.47 7.35 -2.39 -0.02 1.46 16 36 H 0.10 1.99 6.99 -2.39 -0.02 1.97 16 37 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 38 H 0.13 4.59 8.14 -2.39 -0.02 4.57 16 39 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 40 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -74.43 354.24 1.49 -72.94 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.03 Total: 12.33 kcal Atomic # 6 Polarization: -56.92 SS G_CDS: 3.37 Total: -53.55 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -1.12 Total: -82.18 kcal Atomic # 8 Polarization: -79.76 SS G_CDS: -4.29 Total: -84.05 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 91.90 SS G_CDS: -0.31 Total: 91.60 kcal Total: -74.43 1.49 -72.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610006596.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.278 kcal (2) G-P(sol) polarization free energy of solvation -74.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds