Wall clock time and date at job start Tue Mar 31 2020 14:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.43302 * 2 1 4 4 C 1.50816 * 109.43608 * 119.91233 * 2 1 3 5 5 C 1.38859 * 117.78642 * 288.60897 * 4 2 1 6 6 C 1.37917 * 120.53939 * 178.81535 * 5 4 2 7 7 C 1.38491 * 119.69243 * 0.02562 * 6 5 4 8 8 F 1.35099 * 120.11037 * 180.53720 * 7 6 5 9 9 C 1.38135 * 119.77084 * 0.26286 * 7 6 5 10 10 C 1.37688 * 122.32764 * 107.96542 * 4 2 1 11 11 C 1.50601 * 122.83975 * 2.16764 * 10 4 2 12 12 C 1.52777 * 110.86449 * 339.39944 * 11 10 4 13 13 N 1.46678 * 109.40178 * 240.10359 * 2 1 3 14 14 S 1.65605 * 121.31693 * 104.45138 * 13 2 1 15 15 O 1.42103 * 104.27572 * 206.06810 * 14 13 2 16 16 O 1.42098 * 104.28005 * 333.92447 * 14 13 2 17 17 C 1.81398 * 104.44920 * 89.99997 * 14 13 2 18 18 C 1.53002 * 109.47140 * 179.97438 * 17 14 13 19 19 C 1.50701 * 109.47054 * 180.02562 * 18 17 14 20 20 H 1.07997 * 120.00374 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00026 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00115 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99879 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47082 * 90.00259 * 23 21 19 25 25 H 1.48503 * 109.47072 * 210.00269 * 23 21 19 26 26 H 1.48502 * 109.46969 * 330.00437 * 23 21 19 27 27 H 1.09001 * 109.47622 * 300.08617 * 1 2 3 28 28 H 1.09002 * 109.47035 * 60.09055 * 1 2 3 29 29 H 1.09001 * 109.47087 * 180.08468 * 1 2 3 30 30 H 1.07996 * 119.72564 * 358.86551 * 5 4 2 31 31 H 1.07997 * 120.15195 * 180.02562 * 6 5 4 32 32 H 1.08003 * 119.71432 * 180.02562 * 9 7 6 33 33 H 1.09000 * 109.20305 * 99.75798 * 11 10 4 34 34 H 1.09004 * 109.20006 * 219.04387 * 11 10 4 35 35 H 1.08998 * 109.76753 * 287.90258 * 12 11 10 36 36 H 1.09003 * 109.76839 * 167.12175 * 12 11 10 37 37 H 1.09001 * 109.47281 * 299.99931 * 17 14 13 38 38 H 1.09005 * 109.47542 * 59.99512 * 17 14 13 39 39 H 1.09001 * 109.46849 * 299.99763 * 18 17 14 40 40 H 1.08996 * 109.47365 * 60.00033 * 18 17 14 41 41 H 0.96998 * 119.99607 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0278 0.0000 4 6 2.0318 -0.7092 1.2328 5 6 1.8776 -0.0695 2.4555 6 6 2.2940 -0.6769 3.6217 7 6 2.8711 -1.9348 3.5717 8 9 3.2721 -2.5422 4.7099 9 6 3.0300 -2.5687 2.3547 10 6 2.6153 -1.9552 1.1792 11 6 2.8454 -2.6944 -0.1126 12 6 1.9338 -2.1593 -1.2156 13 7 2.0172 -0.6896 -1.1994 14 16 2.6362 0.1519 -2.4844 15 8 2.4141 -0.6993 -3.6004 16 8 2.0146 1.4270 -2.4005 17 6 4.4098 0.2835 -2.1273 18 6 5.1019 1.0499 -3.2562 19 6 6.5754 1.1587 -2.9598 20 1 6.9780 0.7250 -2.0564 21 6 7.4096 1.8128 -3.8415 22 7 8.6954 1.9082 -3.5826 23 14 6.7132 2.5636 -5.4038 24 1 6.3027 3.9659 -5.1388 25 1 7.7496 2.5437 -6.4672 26 1 5.5336 1.7780 -5.8474 27 1 -0.3634 0.5152 0.8892 28 1 -0.3633 0.5124 -0.8908 29 1 -0.3633 -1.0277 0.0015 30 1 1.4271 0.9113 2.4937 31 1 2.1706 -0.1738 4.5693 32 1 3.4798 -3.5499 2.3169 33 1 3.8851 -2.5714 -0.4157 34 1 2.6402 -3.7541 0.0393 35 1 0.9065 -2.4723 -1.0290 36 1 2.2650 -2.5367 -2.1831 37 1 4.5525 0.8148 -1.1862 38 1 4.8399 -0.7151 -2.0495 39 1 4.9592 0.5182 -4.1970 40 1 4.6720 2.0485 -3.3344 41 1 9.2821 2.3687 -4.2027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610006597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:18 Heat of formation + Delta-G solvation = -98.473818 kcal Electronic energy + Delta-G solvation = -26184.232481 eV Core-core repulsion = 22298.278505 eV Total energy + Delta-G solvation = -3885.953975 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.07808 -40.34277 -36.88325 -36.86935 -35.63074 -33.98792 -33.76185 -31.50662 -31.30437 -29.94890 -28.04289 -25.99159 -24.10853 -23.78986 -22.43180 -21.37396 -20.23021 -18.53289 -17.92954 -17.40021 -17.06465 -16.64296 -16.30490 -15.81769 -15.60004 -15.42282 -14.97982 -14.57644 -14.35831 -14.12877 -13.72703 -13.65963 -13.57001 -13.31062 -12.98052 -12.83481 -12.59110 -12.25878 -12.09025 -11.93355 -11.78997 -11.76988 -11.68177 -11.50056 -11.28163 -11.23260 -11.04378 -10.85295 -10.46936 -10.18364 -9.78882 -9.47030 -9.17235 -8.98006 -8.70604 -8.68244 -6.18345 -4.19827 0.54465 0.89827 0.96381 2.77688 3.24762 3.28016 3.32284 3.35958 3.98429 4.09930 4.26363 4.29566 4.33913 4.46984 4.58480 4.73655 4.84527 4.86301 5.01059 5.10002 5.13318 5.19136 5.21237 5.29390 5.43212 5.51980 5.54559 5.59478 5.66909 5.72848 5.81921 5.87258 5.96231 6.00068 6.07186 6.25008 6.33867 6.51225 6.65288 6.78428 6.90691 7.52445 8.34678 8.82865 9.41168 10.94055 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014722 B = 0.003851 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.485368 B = 7268.658227 C = 8245.800859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.194 3.806 3 H 0.107 0.893 4 C -0.096 4.096 5 C -0.082 4.082 6 C -0.156 4.156 7 C 0.098 3.902 8 F -0.142 7.142 9 C -0.156 4.156 10 C -0.032 4.032 11 C -0.105 4.105 12 C 0.120 3.880 13 N -1.003 6.003 14 S 2.588 3.412 15 O -0.961 6.961 16 O -0.961 6.961 17 C -0.582 4.582 18 C -0.006 4.006 19 C -0.519 4.519 20 H 0.078 0.922 21 C 0.072 3.928 22 N -0.895 5.895 23 Si 0.869 3.131 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.262 1.262 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.032 0.968 40 H 0.028 0.972 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.476 -8.651 12.520 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.087 3.913 3 H 0.125 0.875 4 C -0.097 4.097 5 C -0.100 4.100 6 C -0.174 4.174 7 C 0.079 3.921 8 F -0.120 7.120 9 C -0.174 4.174 10 C -0.033 4.033 11 C -0.143 4.143 12 C -0.005 4.005 13 N -0.837 5.837 14 S 2.688 3.312 15 O -0.951 6.951 16 O -0.951 6.951 17 C -0.715 4.715 18 C -0.046 4.046 19 C -0.558 4.558 20 H 0.096 0.904 21 C -0.131 4.131 22 N -0.533 5.533 23 Si 0.695 3.305 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.186 1.186 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.050 0.950 40 H 0.046 0.954 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.836 -8.295 11.726 22.130 hybrid contribution 0.569 0.147 0.067 0.591 sum -16.267 -8.149 11.793 21.681 Atomic orbital electron populations 1.22147 0.93725 1.02658 1.02953 1.19656 0.94799 0.95571 0.81254 0.87512 1.19875 1.00048 0.94782 0.95029 1.20946 0.98385 0.99960 0.90753 1.21050 1.01951 0.94468 0.99975 1.17606 0.99894 0.92604 0.82035 1.91498 1.88631 1.83051 1.48866 1.21159 1.03787 1.01652 0.90844 1.19288 0.96090 0.93495 0.94407 1.20968 1.01807 0.99571 0.92002 1.21393 1.00458 0.78939 0.99718 1.58138 1.77434 1.15392 1.32760 1.05781 0.78619 0.73636 0.73208 1.93543 1.85514 1.67142 1.48896 1.93546 1.74459 1.41352 1.85741 1.30350 1.20327 1.10399 1.10411 1.19411 0.98623 0.94782 0.91767 1.20837 0.89008 1.37166 1.08822 0.90429 1.24982 0.94729 0.95375 0.97964 1.69881 1.03521 1.42687 1.37217 0.86937 0.79572 0.80527 0.83488 1.19644 1.20716 1.18623 0.91323 0.91208 0.92046 0.84654 0.84660 0.84742 0.89145 0.89180 0.90422 0.87869 0.85700 0.85676 0.94974 0.95427 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.25 37.16 0.34 -1.11 16 2 C 0.19 2.12 2.63 -68.93 -0.18 1.94 16 3 H 0.11 1.19 7.39 -51.93 -0.38 0.80 16 4 C -0.10 -0.98 5.17 -104.54 -0.54 -1.52 16 5 C -0.08 -0.74 9.27 -39.47 -0.37 -1.10 16 6 C -0.16 -1.44 10.04 -39.61 -0.40 -1.84 16 7 C 0.10 1.02 7.30 -39.53 -0.29 0.74 16 8 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 9 C -0.16 -1.54 9.57 -39.36 -0.38 -1.91 16 10 C -0.03 -0.33 5.76 -104.61 -0.60 -0.93 16 11 C -0.11 -0.93 5.86 -28.05 -0.16 -1.09 16 12 C 0.12 1.20 6.27 -3.77 -0.02 1.17 16 13 N -1.00 -12.38 2.83 -107.94 -0.31 -12.68 16 14 S 2.59 42.62 5.44 -107.50 -0.59 42.04 16 15 O -0.96 -17.95 16.69 -57.54 -0.96 -18.91 16 16 O -0.96 -17.92 16.93 -57.54 -0.97 -18.90 16 17 C -0.58 -10.46 6.12 37.16 0.23 -10.23 16 18 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16 19 C -0.52 -14.38 9.66 -34.44 -0.33 -14.71 16 20 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 21 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 22 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 23 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 27 H 0.07 0.51 7.92 -51.93 -0.41 0.10 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.53 7.36 -51.93 -0.38 0.15 16 30 H 0.14 0.92 8.05 -52.49 -0.42 0.50 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.13 1.11 8.05 -52.48 -0.42 0.69 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 35 H 0.08 0.65 7.35 -51.93 -0.38 0.27 16 36 H 0.10 1.04 6.99 -51.93 -0.36 0.68 16 37 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 38 H 0.12 2.04 8.14 -51.92 -0.42 1.61 16 39 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 40 H 0.03 0.64 7.57 -51.93 -0.39 0.24 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 350.67 15.07 5.28 5.28 Total: -1.00 -33.95 350.67 -9.96 -43.92 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.65 Total: -0.76 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: -2.91 Total: -28.90 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.47 Total: -38.84 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.93 Total: -37.81 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: 42.62 SS G_CDS: -0.59 Total: 42.04 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.95 -9.96 -43.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610006597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.558 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds