Wall clock time and date at job start Tue Mar 31 2020 14:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.43302 * 2 1 4 4 C 1.50816 * 109.43608 * 119.91233 * 2 1 3 5 5 C 1.38859 * 117.78642 * 288.60897 * 4 2 1 6 6 C 1.37917 * 120.53939 * 178.81535 * 5 4 2 7 7 C 1.38491 * 119.69243 * 0.02562 * 6 5 4 8 8 F 1.35099 * 120.11037 * 180.53720 * 7 6 5 9 9 C 1.38135 * 119.77084 * 0.26286 * 7 6 5 10 10 C 1.37688 * 122.32764 * 107.96542 * 4 2 1 11 11 C 1.50601 * 122.83975 * 2.16764 * 10 4 2 12 12 C 1.52777 * 110.86449 * 339.39944 * 11 10 4 13 13 N 1.46678 * 109.40178 * 240.10359 * 2 1 3 14 14 S 1.65605 * 121.31693 * 104.45138 * 13 2 1 15 15 O 1.42103 * 104.27572 * 206.06810 * 14 13 2 16 16 O 1.42098 * 104.28005 * 333.92447 * 14 13 2 17 17 C 1.81398 * 104.44920 * 89.99997 * 14 13 2 18 18 C 1.53002 * 109.47140 * 179.97438 * 17 14 13 19 19 C 1.50701 * 109.47054 * 180.02562 * 18 17 14 20 20 H 1.07997 * 120.00374 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00026 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00115 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99879 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47082 * 90.00259 * 23 21 19 25 25 H 1.48503 * 109.47072 * 210.00269 * 23 21 19 26 26 H 1.48502 * 109.46969 * 330.00437 * 23 21 19 27 27 H 1.09001 * 109.47622 * 300.08617 * 1 2 3 28 28 H 1.09002 * 109.47035 * 60.09055 * 1 2 3 29 29 H 1.09001 * 109.47087 * 180.08468 * 1 2 3 30 30 H 1.07996 * 119.72564 * 358.86551 * 5 4 2 31 31 H 1.07997 * 120.15195 * 180.02562 * 6 5 4 32 32 H 1.08003 * 119.71432 * 180.02562 * 9 7 6 33 33 H 1.09000 * 109.20305 * 99.75798 * 11 10 4 34 34 H 1.09004 * 109.20006 * 219.04387 * 11 10 4 35 35 H 1.08998 * 109.76753 * 287.90258 * 12 11 10 36 36 H 1.09003 * 109.76839 * 167.12175 * 12 11 10 37 37 H 1.09001 * 109.47281 * 299.99931 * 17 14 13 38 38 H 1.09005 * 109.47542 * 59.99512 * 17 14 13 39 39 H 1.09001 * 109.46849 * 299.99763 * 18 17 14 40 40 H 1.08996 * 109.47365 * 60.00033 * 18 17 14 41 41 H 0.96998 * 119.99607 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0278 0.0000 4 6 2.0318 -0.7092 1.2328 5 6 1.8776 -0.0695 2.4555 6 6 2.2940 -0.6769 3.6217 7 6 2.8711 -1.9348 3.5717 8 9 3.2721 -2.5422 4.7099 9 6 3.0300 -2.5687 2.3547 10 6 2.6153 -1.9552 1.1792 11 6 2.8454 -2.6944 -0.1126 12 6 1.9338 -2.1593 -1.2156 13 7 2.0172 -0.6896 -1.1994 14 16 2.6362 0.1519 -2.4844 15 8 2.4141 -0.6993 -3.6004 16 8 2.0146 1.4270 -2.4005 17 6 4.4098 0.2835 -2.1273 18 6 5.1019 1.0499 -3.2562 19 6 6.5754 1.1587 -2.9598 20 1 6.9780 0.7250 -2.0564 21 6 7.4096 1.8128 -3.8415 22 7 8.6954 1.9082 -3.5826 23 14 6.7132 2.5636 -5.4038 24 1 6.3027 3.9659 -5.1388 25 1 7.7496 2.5437 -6.4672 26 1 5.5336 1.7780 -5.8474 27 1 -0.3634 0.5152 0.8892 28 1 -0.3633 0.5124 -0.8908 29 1 -0.3633 -1.0277 0.0015 30 1 1.4271 0.9113 2.4937 31 1 2.1706 -0.1738 4.5693 32 1 3.4798 -3.5499 2.3169 33 1 3.8851 -2.5714 -0.4157 34 1 2.6402 -3.7541 0.0393 35 1 0.9065 -2.4723 -1.0290 36 1 2.2650 -2.5367 -2.1831 37 1 4.5525 0.8148 -1.1862 38 1 4.8399 -0.7151 -2.0495 39 1 4.9592 0.5182 -4.1970 40 1 4.6720 2.0485 -3.3344 41 1 9.2821 2.3687 -4.2027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610006597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:18 Heat of formation + Delta-G solvation = -120.166310 kcal Electronic energy + Delta-G solvation = -26185.173138 eV Core-core repulsion = 22298.278505 eV Total energy + Delta-G solvation = -3886.894633 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.88504 -41.10618 -38.27701 -37.71288 -37.03362 -35.90283 -34.52037 -33.47881 -32.13331 -30.68813 -28.83370 -27.86847 -24.88147 -24.60902 -23.24249 -23.07026 -21.24567 -19.74667 -19.28201 -18.70333 -18.18029 -17.64480 -17.16741 -17.01685 -16.61799 -16.54724 -16.37647 -15.88892 -15.42368 -15.23692 -14.93431 -14.83648 -14.45976 -14.35203 -14.07665 -13.80906 -13.75273 -13.45854 -13.25650 -13.22842 -13.08163 -12.97779 -12.95119 -12.78499 -12.60826 -12.27346 -12.25181 -11.98547 -11.83656 -11.73155 -11.61715 -11.25931 -10.84946 -10.11714 -9.80250 -9.47165 -8.36993 -6.43062 -0.78171 0.14067 0.25967 1.32036 1.33722 1.43839 1.62235 2.29269 2.54991 2.77127 2.97007 3.09391 3.25328 3.46297 3.68983 3.80549 3.86929 4.00090 4.02422 4.10818 4.16680 4.25810 4.34696 4.49502 4.51334 4.55153 4.61969 4.77063 4.91285 4.94794 5.01204 5.04825 5.08324 5.12747 5.15785 5.20248 5.27283 5.35624 5.46625 5.53963 5.67554 5.93333 6.16178 6.63018 7.21510 8.78721 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014722 B = 0.003851 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.485368 B = 7268.658227 C = 8245.800859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.187 3.813 3 H 0.103 0.897 4 C -0.104 4.104 5 C -0.082 4.082 6 C -0.157 4.157 7 C 0.079 3.921 8 F -0.150 7.150 9 C -0.160 4.160 10 C -0.041 4.041 11 C -0.104 4.104 12 C 0.113 3.887 13 N -0.995 5.995 14 S 2.619 3.381 15 O -0.981 6.981 16 O -0.982 6.982 17 C -0.591 4.591 18 C -0.016 4.016 19 C -0.527 4.527 20 H 0.047 0.953 21 C 0.014 3.986 22 N -0.941 5.941 23 Si 0.925 3.075 24 H -0.260 1.260 25 H -0.274 1.274 26 H -0.248 1.248 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.158 0.842 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.601 -9.004 12.760 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.081 3.919 3 H 0.121 0.879 4 C -0.106 4.106 5 C -0.100 4.100 6 C -0.176 4.176 7 C 0.060 3.940 8 F -0.129 7.129 9 C -0.179 4.179 10 C -0.042 4.042 11 C -0.142 4.142 12 C -0.011 4.011 13 N -0.832 5.832 14 S 2.716 3.284 15 O -0.972 6.972 16 O -0.972 6.972 17 C -0.722 4.722 18 C -0.055 4.055 19 C -0.566 4.566 20 H 0.065 0.935 21 C -0.184 4.184 22 N -0.580 5.580 23 Si 0.747 3.253 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.171 1.171 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.176 0.824 31 H 0.170 0.830 32 H 0.164 0.836 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.948 -8.650 11.967 24.022 hybrid contribution 1.214 0.187 0.135 1.236 sum -17.734 -8.464 12.102 23.078 Atomic orbital electron populations 1.22152 0.92266 1.03438 1.03412 1.19864 0.95956 0.95331 0.80726 0.87929 1.19916 1.00592 0.95001 0.95067 1.21196 0.97933 1.00735 0.90128 1.21289 1.01282 0.94075 1.00928 1.17884 1.00712 0.93352 0.82038 1.91475 1.88845 1.83281 1.49297 1.21311 1.03704 1.02247 0.90633 1.19440 0.96205 0.93671 0.94851 1.21005 1.01209 1.01009 0.91011 1.21676 1.02112 0.77128 1.00198 1.57820 1.76411 1.16519 1.32433 1.04644 0.77279 0.73073 0.73392 1.93512 1.85380 1.67606 1.50655 1.93513 1.74319 1.42988 1.86367 1.30383 1.22479 1.10442 1.08849 1.19361 0.96388 0.95865 0.93845 1.21159 0.91574 1.36258 1.07616 0.93512 1.25878 0.94979 0.96062 1.01525 1.70013 1.05009 1.44201 1.38823 0.86029 0.79498 0.80233 0.79524 1.18471 1.19884 1.17145 0.89183 0.92430 0.91132 0.82442 0.82951 0.83570 0.89663 0.86516 0.88241 0.87998 0.84869 0.84461 0.94885 0.95119 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.25 71.98 0.67 -1.81 16 2 C 0.19 3.70 2.63 44.25 0.12 3.82 16 3 H 0.10 2.11 7.39 -2.39 -0.02 2.10 16 4 C -0.10 -1.90 5.17 -19.81 -0.10 -2.00 16 5 C -0.08 -1.28 9.27 22.34 0.21 -1.07 16 6 C -0.16 -2.59 10.04 22.25 0.22 -2.37 16 7 C 0.08 1.55 7.30 22.31 0.16 1.71 16 8 F -0.15 -3.23 17.27 44.97 0.78 -2.46 16 9 C -0.16 -2.90 9.57 22.41 0.21 -2.69 16 10 C -0.04 -0.75 5.76 -19.86 -0.11 -0.86 16 11 C -0.10 -1.61 5.86 29.74 0.17 -1.43 16 12 C 0.11 1.99 6.27 86.17 0.54 2.53 16 13 N -0.99 -22.72 2.83 -495.41 -1.40 -24.12 16 14 S 2.62 83.00 5.44 -56.49 -0.31 82.69 16 15 O -0.98 -35.36 16.69 -127.65 -2.13 -37.49 16 16 O -0.98 -35.44 16.93 -127.65 -2.16 -37.61 16 17 C -0.59 -20.96 6.12 71.98 0.44 -20.52 16 18 C -0.02 -0.72 4.05 29.85 0.12 -0.60 16 19 C -0.53 -29.73 9.66 25.60 0.25 -29.48 16 20 H 0.05 2.83 7.99 -2.91 -0.02 2.81 16 21 C 0.01 0.81 5.47 84.66 0.46 1.28 16 22 N -0.94 -57.82 13.96 21.45 0.30 -57.53 16 23 Si 0.92 43.50 27.47 68.60 1.88 45.38 16 24 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 27 H 0.09 1.06 7.92 -2.39 -0.02 1.04 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.00 7.36 -2.39 -0.02 0.98 16 30 H 0.16 1.67 8.05 -2.91 -0.02 1.65 16 31 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.15 2.18 8.05 -2.91 -0.02 2.15 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.12 1.18 8.10 -2.39 -0.02 1.16 16 35 H 0.10 1.36 7.35 -2.39 -0.02 1.34 16 36 H 0.10 1.85 6.99 -2.39 -0.02 1.84 16 37 H 0.13 4.41 8.14 -2.39 -0.02 4.39 16 38 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 39 H 0.03 1.52 7.20 -2.39 -0.02 1.50 16 40 H 0.03 1.39 7.57 -2.39 -0.02 1.38 16 41 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -73.28 350.67 1.30 -71.98 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.98 Total: 12.65 kcal Atomic # 6 Polarization: -56.86 SS G_CDS: 3.36 Total: -53.50 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -1.10 Total: -81.65 kcal Atomic # 8 Polarization: -70.81 SS G_CDS: -4.29 Total: -75.10 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.78 Total: -2.46 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.38 kcal Atomic # 16 Polarization: 83.00 SS G_CDS: -0.31 Total: 82.69 kcal Total: -73.28 1.30 -71.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610006597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.183 kcal (2) G-P(sol) polarization free energy of solvation -73.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds