Wall clock time and date at job start Tue Mar 31 2020 15:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 114.00355 * 2 1 4 4 C 1.52994 * 109.47429 * 184.92217 * 3 2 1 5 5 N 1.46902 * 109.47378 * 60.11502 * 4 3 2 6 6 C 1.46895 * 111.00346 * 200.05101 * 5 4 3 7 7 C 1.50699 * 109.47463 * 66.04746 * 6 5 4 8 8 H 1.08005 * 119.99715 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00271 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99525 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99987 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47069 * 59.99806 * 11 9 7 13 13 H 1.48501 * 109.47122 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47183 * 299.99494 * 11 9 7 15 15 C 1.46904 * 110.99929 * 76.09015 * 5 4 3 16 16 C 1.50697 * 109.47420 * 200.10691 * 15 5 4 17 17 O 1.21280 * 120.00025 * 6.47819 * 16 15 5 18 18 N 1.34777 * 119.99957 * 186.47545 * 16 15 5 19 19 C 1.39458 * 119.99843 * 182.06307 * 18 16 15 20 20 C 1.39032 * 119.68241 * 339.89029 * 19 18 16 21 21 C 1.38348 * 119.11627 * 179.97438 * 20 19 18 22 22 C 1.38931 * 118.48344 * 0.02562 * 21 20 19 23 23 Cl 1.73600 * 120.36013 * 179.97438 * 22 21 20 24 24 C 1.38182 * 119.28493 * 359.97438 * 22 21 20 25 25 N 1.31942 * 120.82989 * 0.02562 * 24 22 21 26 26 H 1.08992 * 109.47112 * 184.92509 * 1 2 3 27 27 H 1.08993 * 109.46425 * 304.92598 * 1 2 3 28 28 H 1.09004 * 109.46987 * 64.92143 * 1 2 3 29 29 H 1.09000 * 109.47145 * 64.92055 * 3 2 1 30 30 H 1.09007 * 109.46930 * 304.92192 * 3 2 1 31 31 H 1.09001 * 109.47001 * 300.11948 * 4 3 2 32 32 H 1.08990 * 109.47598 * 180.11660 * 4 3 2 33 33 H 1.09003 * 109.47118 * 186.05097 * 6 5 4 34 34 H 1.09002 * 109.47214 * 306.04153 * 6 5 4 35 35 H 0.96999 * 119.99172 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.46402 * 80.10977 * 15 5 4 37 37 H 1.08998 * 109.46897 * 320.11359 * 15 5 4 38 38 H 0.96998 * 119.99744 * 2.06225 * 18 16 15 39 39 H 1.08005 * 120.43854 * 0.25393 * 20 19 18 40 40 H 1.08002 * 120.76211 * 180.02562 * 21 20 19 41 41 H 1.08003 * 119.58748 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5307 1.1868 -0.1238 5 7 3.8679 0.5031 -1.3795 6 6 5.2277 -0.0502 -1.3290 7 6 5.2858 -1.1469 -0.2970 8 1 4.4009 -1.4071 0.2648 9 6 6.4687 -1.8181 -0.0701 10 7 7.5461 -1.5015 -0.7547 11 14 6.5408 -3.1770 1.2095 12 1 5.5827 -4.2515 0.8450 13 1 7.9154 -3.7365 1.2605 14 1 6.1814 -2.6237 2.5400 15 6 3.7085 1.4042 -2.5287 16 6 3.5729 0.5907 -3.7900 17 8 3.4876 -0.6174 -3.7261 18 7 3.5463 1.2057 -4.9890 19 6 3.3775 0.4567 -6.1532 20 6 3.6526 -0.9061 -6.1410 21 6 3.4807 -1.6379 -7.3024 22 6 3.0378 -0.9780 -8.4420 23 17 2.8060 -1.8487 -9.9258 24 6 2.7837 0.3789 -8.3815 25 7 2.9572 1.0499 -7.2588 26 1 -0.3633 -1.0238 0.0882 27 1 -0.3632 0.5883 0.8426 28 1 -0.3633 0.4356 -0.9308 29 1 1.7602 1.8145 0.9308 30 1 1.6207 1.8767 -0.8427 31 1 3.9201 0.6138 0.7177 32 1 3.9742 2.1823 -0.1217 33 1 5.4914 -0.4560 -2.3057 34 1 5.9312 0.7382 -1.0613 35 1 8.3781 -1.9740 -0.5953 36 1 4.5818 2.0519 -2.6063 37 1 2.8152 2.0135 -2.3915 38 1 3.6445 2.1692 -5.0420 39 1 3.9917 -1.3878 -5.2358 40 1 3.6861 -2.6980 -7.3228 41 1 2.4396 0.8969 -9.2645 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610391770.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:01 Heat of formation + Delta-G solvation = -20.786936 kcal Electronic energy + Delta-G solvation = -25458.336323 eV Core-core repulsion = 21593.627358 eV Total energy + Delta-G solvation = -3864.708964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.93350 -39.21429 -37.71691 -36.74838 -35.97553 -34.65234 -32.54718 -32.47707 -30.49888 -29.49789 -28.05768 -26.13466 -25.07672 -23.98939 -23.17070 -22.33483 -20.96719 -19.86984 -18.18002 -17.35592 -16.83094 -16.54995 -16.18663 -15.85060 -15.54875 -15.20087 -14.84169 -14.57036 -14.44063 -14.19143 -13.96017 -13.52105 -13.37649 -13.20737 -12.82478 -12.46964 -12.30788 -12.04744 -11.87431 -11.70705 -11.39512 -11.26054 -11.10931 -10.71055 -10.64376 -10.47919 -10.16836 -9.95762 -9.85565 -9.76022 -9.36872 -9.26190 -9.09647 -8.37803 -8.27920 -7.32703 -5.97032 -3.96051 0.83886 1.10775 1.92989 2.73606 2.76806 3.39330 3.42788 3.47774 3.67239 4.21102 4.39651 4.47207 4.60069 4.65923 4.85883 4.93768 5.13643 5.30445 5.39236 5.44051 5.49388 5.56539 5.65753 5.68772 5.70934 5.73719 5.76241 5.89269 5.91110 6.06250 6.18854 6.58935 6.72976 7.02476 7.21373 7.22948 7.62362 7.80572 7.86142 8.06320 8.14311 8.29860 8.55126 9.11859 9.67157 11.14291 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010980 B = 0.003304 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.453292 B = 8473.094880 C = 9887.324382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.068 3.932 4 C 0.061 3.939 5 N -0.508 5.508 6 C 0.196 3.804 7 C -0.498 4.498 8 H 0.068 0.932 9 C 0.055 3.945 10 N -0.902 5.902 11 Si 0.898 3.102 12 H -0.276 1.276 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.040 3.960 16 C 0.517 3.483 17 O -0.466 6.466 18 N -0.662 5.662 19 C 0.366 3.634 20 C -0.175 4.175 21 C -0.046 4.046 22 C -0.121 4.121 23 Cl -0.065 7.065 24 C 0.138 3.862 25 N -0.508 5.508 26 H 0.080 0.920 27 H 0.031 0.969 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.035 0.965 31 H 0.102 0.898 32 H 0.039 0.961 33 H 0.035 0.965 34 H -0.011 1.011 35 H 0.260 0.740 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.414 0.586 39 H 0.186 0.814 40 H 0.147 0.853 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.033 8.055 -10.999 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C -0.009 4.009 4 C -0.068 4.068 5 N -0.232 5.232 6 C 0.071 3.929 7 C -0.537 4.537 8 H 0.086 0.914 9 C -0.146 4.146 10 N -0.542 5.542 11 Si 0.726 3.274 12 H -0.201 1.201 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.092 4.092 16 C 0.303 3.697 17 O -0.334 6.334 18 N -0.310 5.310 19 C 0.136 3.864 20 C -0.197 4.197 21 C -0.072 4.072 22 C -0.152 4.152 23 Cl -0.037 7.037 24 C -0.020 4.020 25 N -0.223 5.223 26 H 0.099 0.901 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.120 0.880 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.007 0.993 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.250 0.750 39 H 0.203 0.797 40 H 0.165 0.835 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.288 7.378 -10.974 17.386 hybrid contribution 0.615 -0.225 0.350 0.742 sum -10.674 7.153 -10.624 16.672 Atomic orbital electron populations 1.22665 0.82907 1.02144 0.98830 1.88167 1.17672 1.26890 1.94956 1.22624 0.95007 0.85018 0.98269 1.22092 0.92371 0.97211 0.95081 1.61764 1.31903 1.30756 0.98814 1.19801 0.80507 0.94004 0.98542 1.21108 0.95663 1.17233 1.19707 0.91410 1.24955 0.95626 0.97395 0.96611 1.69950 1.00712 1.42139 1.41422 0.86562 0.76750 0.82370 0.81732 1.20141 1.21550 1.20339 1.21891 1.02131 0.94498 0.90685 1.21210 0.75364 0.89389 0.83700 1.90605 1.43603 1.13950 1.85286 1.43621 1.71732 1.11704 1.03930 1.18526 0.92493 0.89194 0.86225 1.22999 1.01833 0.93567 1.01299 1.21556 0.94260 1.01192 0.90210 1.21932 1.09612 0.94258 0.89365 1.98359 1.95755 1.76388 1.33204 1.22314 0.95346 0.89196 0.95189 1.67192 1.16326 1.39817 0.98954 0.90135 0.95022 0.94935 0.93897 0.94645 0.87968 0.94276 0.94702 0.99323 0.93030 0.92117 0.88778 0.74951 0.79695 0.83517 0.81775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.36 -6.44 10.57 -35.23 -0.37 -6.82 16 3 C 0.07 1.03 6.10 37.15 0.23 1.25 16 4 C 0.06 1.07 5.20 -3.83 -0.02 1.05 16 5 N -0.51 -10.39 3.81 -237.52 -0.91 -11.30 16 6 C 0.20 4.96 4.37 -4.98 -0.02 4.94 16 7 C -0.50 -14.01 8.23 -34.44 -0.28 -14.30 16 8 H 0.07 1.94 7.32 -52.48 -0.38 1.55 16 9 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 11 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.04 0.63 5.30 -4.97 -0.03 0.60 16 16 C 0.52 8.71 7.26 -10.99 -0.08 8.63 16 17 O -0.47 -9.80 12.27 5.56 0.07 -9.73 16 18 N -0.66 -9.03 5.42 -11.42 -0.06 -9.09 16 19 C 0.37 5.37 7.52 -154.68 -1.16 4.21 16 20 C -0.17 -2.68 8.88 -39.25 -0.35 -3.03 16 21 C -0.05 -0.59 9.97 -39.28 -0.39 -0.98 16 22 C -0.12 -1.42 6.34 -39.35 -0.25 -1.67 16 23 Cl -0.07 -0.67 28.99 -51.86 -1.50 -2.17 16 24 C 0.14 1.59 10.97 -17.52 -0.19 1.40 16 25 N -0.51 -6.76 10.39 -12.33 -0.13 -6.89 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.04 0.47 6.77 -51.93 -0.35 0.12 16 31 H 0.10 2.09 6.58 -51.93 -0.34 1.75 16 32 H 0.04 0.60 7.99 -51.93 -0.42 0.18 16 33 H 0.03 0.97 6.95 -51.93 -0.36 0.61 16 34 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.06 0.86 7.99 -51.93 -0.42 0.45 16 37 H 0.09 1.18 6.51 -51.93 -0.34 0.84 16 38 H 0.41 4.28 8.82 -40.82 -0.36 3.92 16 39 H 0.19 3.34 5.17 -52.88 -0.27 3.06 16 40 H 0.15 1.64 8.06 -52.49 -0.42 1.21 16 41 H 0.17 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -33.54 361.42 -8.61 -42.14 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.33 Total: 2.33 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -1.53 Total: 5.09 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.36 Total: -53.32 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.30 Total: -16.55 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.54 -8.61 -42.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610391770.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.357 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds