Wall clock time and date at job start Tue Mar 31 2020 15:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 114.00355 * 2 1 4 4 C 1.52994 * 109.47429 * 184.92217 * 3 2 1 5 5 N 1.46902 * 109.47378 * 60.11502 * 4 3 2 6 6 C 1.46895 * 111.00346 * 200.05101 * 5 4 3 7 7 C 1.50699 * 109.47463 * 66.04746 * 6 5 4 8 8 H 1.08005 * 119.99715 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00271 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99525 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99987 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47069 * 59.99806 * 11 9 7 13 13 H 1.48501 * 109.47122 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47183 * 299.99494 * 11 9 7 15 15 C 1.46904 * 110.99929 * 76.09015 * 5 4 3 16 16 C 1.50697 * 109.47420 * 200.10691 * 15 5 4 17 17 O 1.21280 * 120.00025 * 6.47819 * 16 15 5 18 18 N 1.34777 * 119.99957 * 186.47545 * 16 15 5 19 19 C 1.39458 * 119.99843 * 182.06307 * 18 16 15 20 20 C 1.39032 * 119.68241 * 339.89029 * 19 18 16 21 21 C 1.38348 * 119.11627 * 179.97438 * 20 19 18 22 22 C 1.38931 * 118.48344 * 0.02562 * 21 20 19 23 23 Cl 1.73600 * 120.36013 * 179.97438 * 22 21 20 24 24 C 1.38182 * 119.28493 * 359.97438 * 22 21 20 25 25 N 1.31942 * 120.82989 * 0.02562 * 24 22 21 26 26 H 1.08992 * 109.47112 * 184.92509 * 1 2 3 27 27 H 1.08993 * 109.46425 * 304.92598 * 1 2 3 28 28 H 1.09004 * 109.46987 * 64.92143 * 1 2 3 29 29 H 1.09000 * 109.47145 * 64.92055 * 3 2 1 30 30 H 1.09007 * 109.46930 * 304.92192 * 3 2 1 31 31 H 1.09001 * 109.47001 * 300.11948 * 4 3 2 32 32 H 1.08990 * 109.47598 * 180.11660 * 4 3 2 33 33 H 1.09003 * 109.47118 * 186.05097 * 6 5 4 34 34 H 1.09002 * 109.47214 * 306.04153 * 6 5 4 35 35 H 0.96999 * 119.99172 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.46402 * 80.10977 * 15 5 4 37 37 H 1.08998 * 109.46897 * 320.11359 * 15 5 4 38 38 H 0.96998 * 119.99744 * 2.06225 * 18 16 15 39 39 H 1.08005 * 120.43854 * 0.25393 * 20 19 18 40 40 H 1.08002 * 120.76211 * 180.02562 * 21 20 19 41 41 H 1.08003 * 119.58748 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5307 1.1868 -0.1238 5 7 3.8679 0.5031 -1.3795 6 6 5.2277 -0.0502 -1.3290 7 6 5.2858 -1.1469 -0.2970 8 1 4.4009 -1.4071 0.2648 9 6 6.4687 -1.8181 -0.0701 10 7 7.5461 -1.5015 -0.7547 11 14 6.5408 -3.1770 1.2095 12 1 5.5827 -4.2515 0.8450 13 1 7.9154 -3.7365 1.2605 14 1 6.1814 -2.6237 2.5400 15 6 3.7085 1.4042 -2.5287 16 6 3.5729 0.5907 -3.7900 17 8 3.4876 -0.6174 -3.7261 18 7 3.5463 1.2057 -4.9890 19 6 3.3775 0.4567 -6.1532 20 6 3.6526 -0.9061 -6.1410 21 6 3.4807 -1.6379 -7.3024 22 6 3.0378 -0.9780 -8.4420 23 17 2.8060 -1.8487 -9.9258 24 6 2.7837 0.3789 -8.3815 25 7 2.9572 1.0499 -7.2588 26 1 -0.3633 -1.0238 0.0882 27 1 -0.3632 0.5883 0.8426 28 1 -0.3633 0.4356 -0.9308 29 1 1.7602 1.8145 0.9308 30 1 1.6207 1.8767 -0.8427 31 1 3.9201 0.6138 0.7177 32 1 3.9742 2.1823 -0.1217 33 1 5.4914 -0.4560 -2.3057 34 1 5.9312 0.7382 -1.0613 35 1 8.3781 -1.9740 -0.5953 36 1 4.5818 2.0519 -2.6063 37 1 2.8152 2.0135 -2.3915 38 1 3.6445 2.1692 -5.0420 39 1 3.9917 -1.3878 -5.2358 40 1 3.6861 -2.6980 -7.3228 41 1 2.4396 0.8969 -9.2645 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610391770.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:01 Heat of formation + Delta-G solvation = -45.108409 kcal Electronic energy + Delta-G solvation = -25459.390981 eV Core-core repulsion = 21593.627358 eV Total energy + Delta-G solvation = -3865.763622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.07904 -40.43626 -38.99389 -37.71247 -37.39615 -35.87875 -34.65497 -33.53159 -31.66215 -30.86718 -29.67980 -27.38960 -26.59898 -25.04359 -24.39952 -24.00136 -22.28065 -21.27453 -19.32042 -18.58676 -18.51132 -17.85419 -17.39886 -17.18099 -16.84892 -16.43929 -16.39519 -16.02414 -15.67468 -15.45599 -15.24366 -14.88165 -14.75685 -14.30260 -14.10402 -13.88966 -13.76172 -13.41654 -13.32546 -12.99989 -12.80459 -12.60836 -12.47466 -12.34799 -12.27938 -11.93958 -11.62632 -11.51981 -11.25228 -11.02725 -10.88310 -10.57890 -10.55425 -10.37536 -9.34732 -8.91398 -8.15907 -6.22162 -0.22119 0.06797 0.98553 1.40115 1.44139 1.50237 1.51546 1.62017 2.43449 2.60991 3.07806 3.17316 3.26833 3.46207 3.53253 3.70418 3.87723 4.03641 4.14779 4.30730 4.36659 4.39832 4.57923 4.60965 4.62490 4.64095 4.76334 4.78793 4.84789 4.91191 5.05515 5.09193 5.22882 5.34155 5.58073 5.70076 5.99866 6.14358 6.33385 6.52028 6.67088 6.79678 6.92843 7.08265 7.45582 8.94847 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010980 B = 0.003304 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.453292 B = 8473.094880 C = 9887.324382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.072 3.928 4 C 0.058 3.942 5 N -0.527 5.527 6 C 0.217 3.783 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.003 3.997 10 N -0.934 5.934 11 Si 0.961 3.039 12 H -0.278 1.278 13 H -0.282 1.282 14 H -0.265 1.265 15 C 0.040 3.960 16 C 0.515 3.485 17 O -0.516 6.516 18 N -0.646 5.646 19 C 0.351 3.649 20 C -0.200 4.200 21 C -0.045 4.045 22 C -0.118 4.118 23 Cl -0.046 7.046 24 C 0.144 3.856 25 N -0.507 5.507 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.000 1.000 34 H -0.029 1.029 35 H 0.262 0.738 36 H 0.081 0.919 37 H 0.136 0.864 38 H 0.431 0.569 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.663 9.493 -11.802 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.005 4.005 4 C -0.069 4.069 5 N -0.251 5.251 6 C 0.091 3.909 7 C -0.550 4.550 8 H 0.075 0.925 9 C -0.194 4.194 10 N -0.575 5.575 11 Si 0.786 3.214 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.190 1.190 15 C -0.091 4.091 16 C 0.303 3.697 17 O -0.389 6.389 18 N -0.295 5.295 19 C 0.122 3.878 20 C -0.223 4.223 21 C -0.072 4.072 22 C -0.148 4.148 23 Cl -0.017 7.017 24 C -0.015 4.015 25 N -0.222 5.222 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.018 0.982 34 H -0.011 1.011 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.153 0.847 38 H 0.270 0.730 39 H 0.171 0.829 40 H 0.176 0.824 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -12.941 8.872 -11.788 19.625 hybrid contribution 1.054 -0.659 0.445 1.320 sum -11.887 8.213 -11.343 18.369 Atomic orbital electron populations 1.22814 0.80743 1.02842 1.00390 1.88102 1.20251 1.28784 1.95361 1.22664 0.92560 0.84519 1.00711 1.22141 0.94843 0.97506 0.92417 1.61524 1.28498 1.33593 1.01502 1.19309 0.83082 0.92906 0.95569 1.21396 0.95297 1.18109 1.20173 0.92535 1.25782 0.95309 0.99706 0.98630 1.70064 1.01201 1.43377 1.42907 0.85570 0.76861 0.79309 0.79669 1.20322 1.20745 1.18960 1.22033 1.04791 0.93891 0.88396 1.21458 0.74539 0.88858 0.84816 1.90615 1.46126 1.16054 1.86108 1.43332 1.70759 1.12391 1.02984 1.18574 0.93298 0.89068 0.86896 1.22751 1.03893 0.94469 1.01175 1.21686 0.93732 1.01770 0.89996 1.21967 1.08651 0.94576 0.89620 1.98370 1.95561 1.76054 1.31706 1.22934 0.93752 0.89255 0.95528 1.67282 1.16300 1.39728 0.98903 0.90216 0.92598 0.93902 0.91107 0.92174 0.91595 0.91511 0.98237 1.01148 0.92936 0.90155 0.84658 0.72997 0.82863 0.82406 0.78297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.95 16 2 O -0.41 -14.25 10.57 -148.98 -1.57 -15.83 16 3 C 0.07 2.02 6.10 71.98 0.44 2.46 16 4 C 0.06 2.04 5.20 86.30 0.45 2.49 16 5 N -0.53 -21.87 3.81 -905.39 -3.45 -25.32 16 6 C 0.22 11.50 4.37 85.56 0.37 11.88 16 7 C -0.51 -29.91 8.23 25.60 0.21 -29.70 16 8 H 0.06 3.36 7.32 -2.91 -0.02 3.34 16 9 C 0.00 0.19 5.46 84.65 0.46 0.65 16 10 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 11 Si 0.96 46.23 29.54 68.60 2.03 48.25 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 15 C 0.04 1.23 5.30 85.56 0.45 1.68 16 16 C 0.52 17.69 7.26 87.66 0.64 18.32 16 17 O -0.52 -22.99 12.27 -3.03 -0.04 -23.03 16 18 N -0.65 -17.42 5.42 -308.43 -1.67 -19.09 16 19 C 0.35 10.28 7.52 132.90 1.00 11.28 16 20 C -0.20 -6.41 8.88 22.49 0.20 -6.21 16 21 C -0.05 -1.18 9.97 22.46 0.22 -0.95 16 22 C -0.12 -2.58 6.34 22.42 0.14 -2.44 16 23 Cl -0.05 -0.83 28.99 -2.72 -0.08 -0.91 16 24 C 0.14 2.97 10.97 84.66 0.93 3.90 16 25 N -0.51 -12.69 10.39 -192.93 -2.00 -14.69 16 26 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.37 6.77 -2.38 -0.02 1.35 16 31 H 0.07 2.77 6.58 -2.39 -0.02 2.75 16 32 H 0.07 1.92 7.99 -2.39 -0.02 1.90 16 33 H 0.00 -0.03 6.95 -2.39 -0.02 -0.05 16 34 H -0.03 -1.60 8.12 -2.39 -0.02 -1.62 16 35 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.08 2.18 7.99 -2.38 -0.02 2.16 16 37 H 0.14 2.98 6.51 -2.39 -0.02 2.97 16 38 H 0.43 8.29 8.82 -92.71 -0.82 7.48 16 39 H 0.15 6.04 5.17 -9.13 -0.05 6.00 16 40 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 41 H 0.20 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -76.83 361.42 0.48 -76.35 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.22 Total: 15.88 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 6.77 Total: 15.32 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -6.84 Total: -116.04 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -1.61 Total: -38.86 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -76.83 0.48 -76.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610391770.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.240 kcal (2) G-P(sol) polarization free energy of solvation -76.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds