Wall clock time and date at job start Tue Mar 31 2020 15:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99950 * 2 1 4 4 C 1.52996 * 109.47164 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46995 * 65.00063 * 4 3 2 6 6 C 1.46508 * 119.99723 * 90.00272 * 5 4 3 7 7 C 1.50694 * 109.47380 * 83.62743 * 6 5 4 8 8 H 1.08002 * 119.99787 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00138 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99403 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00035 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46863 * 90.00418 * 11 9 7 13 13 H 1.48501 * 109.47094 * 209.99975 * 11 9 7 14 14 H 1.48499 * 109.47510 * 330.00232 * 11 9 7 15 15 C 1.34768 * 120.00256 * 269.99900 * 5 4 3 16 16 O 1.21609 * 120.00026 * 5.23938 * 15 5 4 17 17 C 1.47385 * 120.00197 * 185.23600 * 15 5 4 18 18 C 1.39808 * 120.19897 * 53.18597 * 17 15 5 19 19 C 1.37697 * 119.96740 * 179.78796 * 18 17 15 20 20 C 1.38677 * 120.38608 * 0.48907 * 19 18 17 21 21 C 1.38047 * 120.41099 * 359.74355 * 20 19 18 22 22 F 1.35099 * 119.99086 * 180.02562 * 21 20 19 23 23 C 1.39245 * 120.02226 * 0.02562 * 21 20 19 24 24 S 1.76202 * 120.19572 * 179.97438 * 23 21 20 25 25 C 1.81396 * 103.00026 * 269.98024 * 24 23 21 26 26 H 1.08997 * 109.46784 * 299.99980 * 1 2 3 27 27 H 1.08998 * 109.47194 * 59.99746 * 1 2 3 28 28 H 1.08999 * 109.46884 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47075 * 60.00304 * 3 2 1 30 30 H 1.09001 * 109.47184 * 300.00124 * 3 2 1 31 31 H 1.09000 * 109.47630 * 304.99983 * 4 3 2 32 32 H 1.09001 * 109.47584 * 185.00170 * 4 3 2 33 33 H 1.08997 * 109.46477 * 203.63091 * 6 5 4 34 34 H 1.08997 * 109.47162 * 323.62610 * 6 5 4 35 35 H 0.97002 * 119.99164 * 179.97438 * 10 9 7 36 36 H 1.07993 * 120.01912 * 359.97438 * 18 17 15 37 37 H 1.07997 * 119.80941 * 180.22711 * 19 18 17 38 38 H 1.08004 * 119.79643 * 179.76021 * 20 19 18 39 39 H 1.08996 * 109.47001 * 299.99812 * 25 24 23 40 40 H 1.09004 * 109.47276 * 59.99774 * 25 24 23 41 41 H 1.09001 * 109.47056 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2883 1.3999 -2.4130 7 6 5.7023 1.9088 -2.3011 8 1 6.3081 1.6372 -1.4493 9 6 6.2226 2.7213 -3.2861 10 7 5.4846 3.0525 -4.3231 11 14 7.9751 3.3527 -3.1470 12 1 8.9008 2.3910 -3.7977 13 1 8.0804 4.6729 -3.8187 14 1 8.3374 3.4962 -1.7140 15 6 4.0959 -0.7759 -1.3332 16 8 3.7472 -1.4758 -0.4018 17 6 4.6490 -1.3931 -2.5520 18 6 5.8856 -0.9752 -3.0529 19 6 6.3998 -1.5581 -4.1895 20 6 5.6933 -2.5527 -4.8488 21 6 4.4687 -2.9741 -4.3708 22 9 3.7879 -3.9440 -5.0196 23 6 3.9348 -2.3996 -3.2202 24 16 2.3718 -2.9334 -2.6065 25 6 1.2041 -1.8308 -3.4497 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8464 0.8901 30 1 1.6886 1.8464 -0.8900 31 1 3.8509 0.5685 0.8427 32 1 3.9785 2.1765 0.0902 33 1 4.1857 0.8093 -3.3233 34 1 3.6000 2.2443 -2.4483 35 1 5.8506 3.6244 -5.0159 36 1 6.4386 -0.1978 -2.5469 37 1 7.3570 -1.2359 -4.5720 38 1 6.1039 -3.0007 -5.7417 39 1 1.4264 -0.7966 -3.1868 40 1 1.2969 -1.9594 -4.5282 41 1 0.1873 -2.0740 -3.1413 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619550528.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:17 Heat of formation + Delta-G solvation = -86.174209 kcal Electronic energy + Delta-G solvation = -27017.246007 eV Core-core repulsion = 23131.825382 eV Total energy + Delta-G solvation = -3885.420624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -48.64881 -39.64207 -37.87205 -37.02095 -34.97069 -32.74086 -31.26688 -30.42494 -29.27301 -28.51778 -27.15102 -26.00942 -23.98902 -23.12174 -22.45825 -21.87370 -19.08319 -17.36184 -17.02315 -16.51329 -16.34040 -16.06282 -15.78169 -15.42346 -15.26526 -15.07436 -14.72000 -14.50959 -14.42888 -13.69662 -13.58277 -13.18603 -13.06050 -12.74471 -12.72289 -12.38772 -12.19649 -12.02957 -11.76363 -11.61832 -11.39013 -11.32112 -11.25952 -10.99045 -10.84623 -10.66980 -10.23649 -10.08699 -9.84475 -9.29162 -9.05539 -8.71692 -8.58020 -8.30152 -7.73874 -7.15319 -6.29192 -4.37140 1.02442 1.39329 2.05521 2.96541 3.12470 3.22056 3.24115 3.39959 3.75782 4.05246 4.20385 4.26589 4.50343 4.97549 5.02106 5.31991 5.37031 5.40173 5.41791 5.46488 5.49434 5.59141 5.64456 5.68277 5.73736 5.82410 5.86890 5.99564 6.04673 6.18507 6.33498 6.38087 6.60442 6.70679 6.72005 7.09465 7.13985 7.46032 7.60238 7.65322 7.93967 8.31503 8.68425 9.04259 9.30027 10.76546 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009791 B = 0.006774 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.014204 B = 4132.403080 C = 6205.602947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.359 6.359 3 C 0.044 3.956 4 C 0.127 3.873 5 N -0.591 5.591 6 C 0.237 3.763 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.069 3.931 10 N -0.884 5.884 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.557 3.443 16 O -0.514 6.514 17 C -0.042 4.042 18 C -0.078 4.078 19 C -0.075 4.075 20 C -0.152 4.152 21 C 0.121 3.879 22 F -0.131 7.131 23 C -0.127 4.127 24 S -0.114 6.114 25 C -0.135 4.135 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.037 0.963 34 H 0.032 0.968 35 H 0.266 0.734 36 H 0.166 0.834 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.609 -5.113 1.024 6.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C -0.034 4.034 4 C 0.003 3.997 5 N -0.323 5.323 6 C 0.117 3.883 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.135 4.135 10 N -0.521 5.521 11 Si 0.718 3.282 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.196 1.196 15 C 0.343 3.657 16 O -0.390 6.390 17 C -0.047 4.047 18 C -0.098 4.098 19 C -0.093 4.093 20 C -0.173 4.173 21 C 0.099 3.901 22 F -0.109 7.109 23 C -0.240 4.240 24 S 0.118 5.882 25 C -0.303 4.303 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.183 0.817 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.028 -6.381 2.068 8.383 hybrid contribution 0.954 1.787 -1.373 2.447 sum -4.075 -4.594 0.694 6.180 Atomic orbital electron populations 1.22651 0.82850 1.02040 0.98921 1.88203 1.17839 1.26612 1.95078 1.23037 0.95450 0.85387 0.99575 1.21302 0.91144 0.99370 0.87892 1.47980 1.64922 1.05373 1.13983 1.19441 0.96194 0.90081 0.82632 1.21464 0.98100 1.31010 1.07380 0.91730 1.24935 0.97922 0.95615 0.95014 1.69926 1.36594 1.35609 1.09954 0.86604 0.84457 0.78594 0.78561 1.20289 1.21039 1.19634 1.17783 0.78720 0.82572 0.86600 1.90774 1.47888 1.61707 1.38678 1.20244 0.95251 0.94023 0.95206 1.22101 0.94774 0.97378 0.95557 1.21112 0.99731 0.93881 0.94591 1.21159 0.93990 1.00236 1.01894 1.17542 0.91681 0.89132 0.91782 1.91498 1.79408 1.60011 1.79995 1.21777 1.01191 1.02449 0.98601 1.85427 0.94717 1.47255 1.60808 1.23538 1.01109 1.02868 1.02794 0.94943 0.94941 0.90198 0.93404 0.93459 0.90167 0.88719 0.94510 0.94977 0.92414 0.81715 0.84526 0.84651 0.90288 0.90993 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.36 -6.30 9.27 -48.39 -0.45 -6.74 16 3 C 0.04 0.69 6.28 37.16 0.23 0.93 16 4 C 0.13 2.24 5.86 -4.04 -0.02 2.22 16 5 N -0.59 -12.08 2.44 -176.35 -0.43 -12.51 16 6 C 0.24 5.31 4.67 -5.19 -0.02 5.29 16 7 C -0.54 -12.71 6.73 -34.44 -0.23 -12.94 16 8 H 0.06 1.52 7.66 -52.49 -0.40 1.12 16 9 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.88 -22.78 13.29 55.43 0.74 -22.04 16 11 Si 0.89 18.91 29.54 -169.99 -5.02 13.88 16 12 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 13 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 15 C 0.56 11.89 6.22 -12.54 -0.08 11.81 16 16 O -0.51 -11.87 14.56 -7.89 -0.11 -11.99 16 17 C -0.04 -0.84 4.52 -104.79 -0.47 -1.32 16 18 C -0.08 -1.49 7.86 -39.19 -0.31 -1.80 16 19 C -0.07 -1.22 10.02 -39.62 -0.40 -1.61 16 20 C -0.15 -2.35 10.00 -39.49 -0.39 -2.75 16 21 C 0.12 2.12 7.27 -39.28 -0.29 1.83 16 22 F -0.13 -2.20 16.76 2.25 0.04 -2.17 16 23 C -0.13 -2.46 5.75 -38.41 -0.22 -2.68 16 24 S -0.11 -2.10 20.16 -107.50 -2.17 -4.27 16 25 C -0.14 -2.09 10.72 101.05 1.08 -1.00 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.45 7.50 -51.93 -0.39 1.06 16 32 H 0.09 1.57 8.07 -51.93 -0.42 1.15 16 33 H 0.04 0.89 6.26 -51.93 -0.33 0.57 16 34 H 0.03 0.76 8.12 -51.93 -0.42 0.34 16 35 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 36 H 0.17 3.32 5.47 -52.49 -0.29 3.03 16 37 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 38 H 0.14 1.67 8.06 -52.48 -0.42 1.24 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 41 H 0.10 1.28 8.14 -51.92 -0.42 0.85 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -28.42 362.35 -7.66 -36.08 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.61 Total: 3.18 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.11 Total: 1.12 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.31 Total: -34.55 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.56 Total: -18.73 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.88 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -2.17 Total: -4.27 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.42 -7.66 -36.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619550528.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.095 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds