Wall clock time and date at job start Tue Mar 31 2020 15:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99950 * 2 1 4 4 C 1.52996 * 109.47164 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46995 * 65.00063 * 4 3 2 6 6 C 1.46508 * 119.99723 * 90.00272 * 5 4 3 7 7 C 1.50694 * 109.47380 * 83.62743 * 6 5 4 8 8 H 1.08002 * 119.99787 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00138 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99403 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00035 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46863 * 90.00418 * 11 9 7 13 13 H 1.48501 * 109.47094 * 209.99975 * 11 9 7 14 14 H 1.48499 * 109.47510 * 330.00232 * 11 9 7 15 15 C 1.34768 * 120.00256 * 269.99900 * 5 4 3 16 16 O 1.21609 * 120.00026 * 5.23938 * 15 5 4 17 17 C 1.47385 * 120.00197 * 185.23600 * 15 5 4 18 18 C 1.39808 * 120.19897 * 53.18597 * 17 15 5 19 19 C 1.37697 * 119.96740 * 179.78796 * 18 17 15 20 20 C 1.38677 * 120.38608 * 0.48907 * 19 18 17 21 21 C 1.38047 * 120.41099 * 359.74355 * 20 19 18 22 22 F 1.35099 * 119.99086 * 180.02562 * 21 20 19 23 23 C 1.39245 * 120.02226 * 0.02562 * 21 20 19 24 24 S 1.76202 * 120.19572 * 179.97438 * 23 21 20 25 25 C 1.81396 * 103.00026 * 269.98024 * 24 23 21 26 26 H 1.08997 * 109.46784 * 299.99980 * 1 2 3 27 27 H 1.08998 * 109.47194 * 59.99746 * 1 2 3 28 28 H 1.08999 * 109.46884 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47075 * 60.00304 * 3 2 1 30 30 H 1.09001 * 109.47184 * 300.00124 * 3 2 1 31 31 H 1.09000 * 109.47630 * 304.99983 * 4 3 2 32 32 H 1.09001 * 109.47584 * 185.00170 * 4 3 2 33 33 H 1.08997 * 109.46477 * 203.63091 * 6 5 4 34 34 H 1.08997 * 109.47162 * 323.62610 * 6 5 4 35 35 H 0.97002 * 119.99164 * 179.97438 * 10 9 7 36 36 H 1.07993 * 120.01912 * 359.97438 * 18 17 15 37 37 H 1.07997 * 119.80941 * 180.22711 * 19 18 17 38 38 H 1.08004 * 119.79643 * 179.76021 * 20 19 18 39 39 H 1.08996 * 109.47001 * 299.99812 * 25 24 23 40 40 H 1.09004 * 109.47276 * 59.99774 * 25 24 23 41 41 H 1.09001 * 109.47056 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2883 1.3999 -2.4130 7 6 5.7023 1.9088 -2.3011 8 1 6.3081 1.6372 -1.4493 9 6 6.2226 2.7213 -3.2861 10 7 5.4846 3.0525 -4.3231 11 14 7.9751 3.3527 -3.1470 12 1 8.9008 2.3910 -3.7977 13 1 8.0804 4.6729 -3.8187 14 1 8.3374 3.4962 -1.7140 15 6 4.0959 -0.7759 -1.3332 16 8 3.7472 -1.4758 -0.4018 17 6 4.6490 -1.3931 -2.5520 18 6 5.8856 -0.9752 -3.0529 19 6 6.3998 -1.5581 -4.1895 20 6 5.6933 -2.5527 -4.8488 21 6 4.4687 -2.9741 -4.3708 22 9 3.7879 -3.9440 -5.0196 23 6 3.9348 -2.3996 -3.2202 24 16 2.3718 -2.9334 -2.6065 25 6 1.2041 -1.8308 -3.4497 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8464 0.8901 30 1 1.6886 1.8464 -0.8900 31 1 3.8509 0.5685 0.8427 32 1 3.9785 2.1765 0.0902 33 1 4.1857 0.8093 -3.3233 34 1 3.6000 2.2443 -2.4483 35 1 5.8506 3.6244 -5.0159 36 1 6.4386 -0.1978 -2.5469 37 1 7.3570 -1.2359 -4.5720 38 1 6.1039 -3.0007 -5.7417 39 1 1.4264 -0.7966 -3.1868 40 1 1.2969 -1.9594 -4.5282 41 1 0.1873 -2.0740 -3.1413 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619550528.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:16 Heat of formation + Delta-G solvation = -100.472039 kcal Electronic energy + Delta-G solvation = -27017.866007 eV Core-core repulsion = 23131.825382 eV Total energy + Delta-G solvation = -3886.040625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.98918 -41.19059 -39.24383 -38.38490 -36.65749 -34.54237 -32.67875 -31.82448 -30.69928 -29.78818 -28.91182 -27.17214 -25.41287 -24.89192 -23.84563 -23.27519 -20.59297 -18.86819 -18.66876 -18.10974 -17.80027 -17.36943 -17.21854 -16.80308 -16.71542 -16.49261 -16.14016 -16.04244 -15.83196 -15.08445 -14.95862 -14.58010 -14.42770 -14.29935 -14.09316 -13.94442 -13.60303 -13.44754 -13.20392 -13.09709 -12.89751 -12.75930 -12.63414 -12.60058 -12.48880 -12.01541 -11.89335 -11.65563 -11.48123 -10.75433 -10.55362 -10.45873 -9.99252 -9.71242 -9.40708 -8.60242 -8.15492 -6.29325 -0.35827 0.00744 0.65862 1.45320 1.50064 1.57419 1.61832 1.83959 2.23425 2.44366 2.63337 3.02608 3.12084 3.15558 3.60578 3.93554 3.99852 4.18711 4.20289 4.22402 4.26155 4.28450 4.42065 4.47408 4.55830 4.57753 4.66053 4.73150 4.80490 4.86507 4.91421 4.97033 5.01385 5.20408 5.22489 5.34212 5.69886 5.75612 5.87407 6.07939 6.40926 6.60216 6.84095 7.34786 7.46678 8.89737 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009791 B = 0.006774 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.014204 B = 4132.403080 C = 6205.602947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.392 6.392 3 C 0.050 3.950 4 C 0.120 3.880 5 N -0.591 5.591 6 C 0.257 3.743 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.032 3.968 10 N -0.915 5.915 11 Si 0.947 3.053 12 H -0.267 1.267 13 H -0.289 1.289 14 H -0.271 1.271 15 C 0.557 3.443 16 O -0.539 6.539 17 C -0.069 4.069 18 C -0.092 4.092 19 C -0.070 4.070 20 C -0.134 4.134 21 C 0.114 3.886 22 F -0.127 7.127 23 C -0.141 4.141 24 S -0.147 6.147 25 C -0.120 4.120 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.018 0.982 34 H 0.015 0.985 35 H 0.266 0.734 36 H 0.150 0.850 37 H 0.168 0.832 38 H 0.176 0.824 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.037 -5.214 0.283 6.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.311 6.311 3 C -0.028 4.028 4 C -0.003 4.003 5 N -0.322 5.322 6 C 0.137 3.863 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.169 4.169 10 N -0.554 5.554 11 Si 0.773 3.227 12 H -0.192 1.192 13 H -0.215 1.215 14 H -0.195 1.195 15 C 0.344 3.656 16 O -0.417 6.417 17 C -0.075 4.075 18 C -0.112 4.112 19 C -0.088 4.088 20 C -0.154 4.154 21 C 0.092 3.908 22 F -0.106 7.106 23 C -0.254 4.254 24 S 0.084 5.916 25 C -0.288 4.288 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.168 0.832 37 H 0.185 0.815 38 H 0.194 0.806 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.461 -6.481 1.340 7.981 hybrid contribution 0.721 1.787 -1.140 2.239 sum -3.740 -4.694 0.201 6.005 Atomic orbital electron populations 1.22806 0.80837 1.02828 1.00254 1.88156 1.20176 1.27405 1.95345 1.22963 0.93877 0.85258 1.00706 1.21496 0.92909 0.99377 0.86485 1.47980 1.64777 1.05194 1.14241 1.19040 0.95469 0.89133 0.82701 1.21547 0.98333 1.30595 1.07095 0.92032 1.25540 1.01045 0.95731 0.94620 1.70028 1.38164 1.36479 1.10728 0.85710 0.80679 0.77902 0.78416 1.19165 1.21453 1.19517 1.17994 0.78226 0.82553 0.86806 1.90740 1.49217 1.62073 1.39688 1.20240 0.96260 0.95333 0.95638 1.22046 0.94550 0.97785 0.96800 1.21447 1.00742 0.93325 0.93270 1.21556 0.92581 0.98933 1.02360 1.17696 0.92433 0.89236 0.91452 1.91505 1.79492 1.59813 1.79743 1.21912 1.01447 1.02604 0.99388 1.85410 0.95779 1.48137 1.62257 1.23524 1.01425 1.00823 1.03012 0.92850 0.94255 0.89763 0.90304 0.94067 0.90777 0.87852 0.96447 0.96684 0.92439 0.83244 0.81494 0.80645 0.92153 0.89969 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 1.99 16 2 O -0.39 -13.67 9.27 -136.40 -1.26 -14.94 16 3 C 0.05 1.56 6.28 71.98 0.45 2.01 16 4 C 0.12 4.31 5.86 86.38 0.51 4.81 16 5 N -0.59 -24.73 2.44 -830.10 -2.03 -26.76 16 6 C 0.26 11.82 4.67 85.63 0.40 12.22 16 7 C -0.54 -25.35 6.73 25.60 0.17 -25.17 16 8 H 0.06 2.91 7.66 -2.91 -0.02 2.88 16 9 C 0.03 1.53 5.46 84.66 0.46 2.00 16 10 N -0.92 -47.18 13.29 21.45 0.28 -46.89 16 11 Si 0.95 38.11 29.54 68.60 2.03 40.14 16 12 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 13 H -0.29 -11.75 7.11 99.48 0.71 -11.05 16 14 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 15 C 0.56 24.40 6.22 86.65 0.54 24.94 16 16 O -0.54 -25.59 14.56 8.52 0.12 -25.46 16 17 C -0.07 -2.84 4.52 -19.98 -0.09 -2.93 16 18 C -0.09 -3.48 7.86 22.52 0.18 -3.31 16 19 C -0.07 -2.12 10.02 22.25 0.22 -1.90 16 20 C -0.13 -3.78 10.00 22.33 0.22 -3.56 16 21 C 0.11 3.84 7.27 22.47 0.16 4.00 16 22 F -0.13 -4.08 16.76 44.97 0.75 -3.33 16 23 C -0.14 -5.43 5.75 23.03 0.13 -5.30 16 24 S -0.15 -5.46 20.16 -56.49 -1.14 -6.60 16 25 C -0.12 -3.65 10.72 113.37 1.22 -2.44 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 2.74 7.50 -2.39 -0.02 2.72 16 32 H 0.10 3.44 8.07 -2.39 -0.02 3.42 16 33 H 0.02 0.87 6.26 -2.39 -0.01 0.86 16 34 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 35 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 36 H 0.15 6.07 5.47 -2.91 -0.02 6.06 16 37 H 0.17 4.00 8.06 -2.91 -0.02 3.97 16 38 H 0.18 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -61.54 362.35 5.62 -55.92 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 1.04 Total: 20.56 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 5.82 Total: 7.37 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -1.74 Total: -73.65 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -1.14 Total: -40.40 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.75 Total: -3.33 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Atomic # 16 Polarization: -5.46 SS G_CDS: -1.14 Total: -6.60 kcal Total: -61.54 5.62 -55.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619550528.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.555 kcal (2) G-P(sol) polarization free energy of solvation -61.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds