Wall clock time and date at job start Tue Mar 31 2020 15:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47539 * 2 1 4 4 C 1.46500 * 120.00282 * 270.00416 * 3 2 1 5 5 C 1.50704 * 109.46716 * 269.99941 * 4 3 2 6 6 H 1.07998 * 120.00154 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00084 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99967 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00392 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46771 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47605 * 119.99462 * 9 7 5 12 12 H 1.48498 * 109.47011 * 239.99882 * 9 7 5 13 13 C 1.34775 * 120.00135 * 89.99624 * 3 2 1 14 14 O 1.21279 * 120.00300 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99773 * 0.02562 * 13 3 2 16 16 O 1.45206 * 109.47147 * 179.97438 * 15 13 3 17 17 C 1.34727 * 116.99935 * 179.97438 * 16 15 13 18 18 O 1.21490 * 120.00030 * 0.02562 * 17 16 15 19 19 C 1.47566 * 119.99596 * 180.02562 * 17 16 15 20 20 C 1.39742 * 120.16640 * 359.72299 * 19 17 16 21 21 C 1.37821 * 119.92029 * 179.77195 * 20 19 17 22 22 C 1.38462 * 120.25109 * 0.50443 * 21 20 19 23 23 C 1.38379 * 120.32255 * 359.74913 * 22 21 20 24 24 F 1.35105 * 119.96208 * 179.97438 * 23 22 21 25 25 C 1.38539 * 120.07716 * 359.97438 * 23 22 21 26 26 F 1.35104 * 120.12268 * 180.02562 * 25 23 22 27 27 H 1.09005 * 109.47543 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47221 * 300.00363 * 1 2 3 29 29 H 1.09006 * 109.46809 * 60.00184 * 1 2 3 30 30 H 1.09003 * 109.47221 * 239.99637 * 2 1 3 31 31 H 1.09002 * 109.46764 * 120.00327 * 2 1 3 32 32 H 1.08997 * 109.47188 * 29.99019 * 4 3 2 33 33 H 1.09000 * 109.47702 * 149.99942 * 4 3 2 34 34 H 0.97000 * 119.99819 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46980 * 59.99839 * 15 13 3 36 36 H 1.09004 * 109.47113 * 299.99819 * 15 13 3 37 37 H 1.08003 * 120.03678 * 359.97438 * 20 19 17 38 38 H 1.08001 * 119.87717 * 180.23174 * 21 20 19 39 39 H 1.07994 * 119.83787 * 179.76397 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3903 -2.8774 8 7 3.3496 3.1266 -3.6175 9 14 5.9139 2.0973 -3.4163 10 1 6.6015 1.2420 -2.4158 11 1 5.9219 1.4188 -4.7372 12 1 6.6212 3.3986 -3.5240 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9922 1.3059 2.4723 16 8 2.3072 2.1953 3.5760 17 6 2.1355 1.7098 4.8209 18 8 1.7340 0.5743 4.9801 19 6 2.4350 2.5574 5.9912 20 6 2.9025 3.8621 5.8120 21 6 3.1762 4.6509 6.9086 22 6 2.9997 4.1521 8.1881 23 6 2.5423 2.8599 8.3774 24 9 2.3732 2.3805 9.6292 25 6 2.2576 2.0572 7.2847 26 9 1.8105 0.7956 7.4684 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 3.6757 3.5170 -4.4434 35 1 2.6227 0.4186 2.5298 36 1 0.9443 1.0114 2.5302 37 1 3.0460 4.2529 4.8155 38 1 3.5339 5.6604 6.7693 39 1 3.2199 4.7748 9.0426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726677482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:15 Heat of formation + Delta-G solvation = -175.482639 kcal Electronic energy + Delta-G solvation = -27084.694852 eV Core-core repulsion = 22629.188347 eV Total energy + Delta-G solvation = -4455.506505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.84462 -48.90781 -40.76509 -39.27981 -38.69145 -36.47249 -35.36013 -32.88609 -32.00949 -30.85643 -30.21821 -29.18348 -26.70075 -25.00119 -23.26977 -23.11090 -22.65103 -21.44949 -19.02044 -18.63021 -17.94759 -17.54792 -17.01973 -16.97380 -16.61311 -16.42368 -16.34779 -15.86840 -15.34962 -15.28802 -15.23770 -14.68457 -14.56750 -14.29815 -13.58822 -13.45819 -13.39270 -13.06268 -12.76929 -12.53733 -12.37452 -12.18306 -12.15553 -12.10035 -11.67277 -11.28091 -10.98321 -10.92050 -10.78112 -10.67545 -10.57860 -10.18458 -9.68732 -9.67952 -9.23635 -9.07220 -8.48639 -7.80653 -6.09585 -4.14521 -0.02946 0.44696 2.09845 2.13697 3.01087 3.18333 3.26148 3.27122 3.35057 3.39263 3.72393 3.87766 4.08974 4.21993 4.38736 4.43413 4.60643 4.79657 4.98298 5.14391 5.15313 5.19571 5.25343 5.32311 5.42918 5.54953 5.56042 5.67958 5.69685 5.96005 6.12022 6.15949 6.17994 6.41543 6.94490 7.34672 7.40853 7.49351 7.86462 8.16136 8.23832 8.78794 8.94208 9.50781 10.98612 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018351 B = 0.002658 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.450193 B =10531.077441 C =11425.337204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.508 3.492 14 O -0.520 6.520 15 C 0.050 3.950 16 O -0.321 6.321 17 C 0.507 3.493 18 O -0.491 6.491 19 C -0.133 4.133 20 C -0.037 4.037 21 C -0.113 4.113 22 C -0.091 4.091 23 C 0.052 3.948 24 F -0.124 7.124 25 C 0.131 3.869 26 F -0.103 7.103 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.164 0.836 38 H 0.153 0.847 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 -0.506 21.277 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.292 3.708 14 O -0.395 6.395 15 C -0.027 4.027 16 O -0.235 6.235 17 C 0.351 3.649 18 O -0.380 6.380 19 C -0.135 4.135 20 C -0.055 4.055 21 C -0.131 4.131 22 C -0.109 4.109 23 C 0.032 3.968 24 F -0.102 7.102 25 C 0.110 3.890 26 F -0.081 7.081 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.181 0.819 38 H 0.170 0.830 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.627 -0.209 21.137 21.447 hybrid contribution 0.753 -0.774 -0.160 1.092 sum -2.874 -0.982 20.976 21.195 Atomic orbital electron populations 1.22236 0.96468 1.01767 1.02427 1.21525 0.93802 0.83891 1.03112 1.48209 1.63672 1.13434 1.07100 1.19350 0.96536 0.93714 0.77510 1.21460 0.96815 1.32047 1.06383 0.92321 1.24934 0.97941 0.94842 0.96347 1.69940 1.35641 1.33363 1.14337 0.86429 0.84500 0.78088 0.78329 1.19780 1.20946 1.20833 1.19646 0.79767 0.87137 0.84210 1.90708 1.44638 1.17454 1.86729 1.23057 1.03007 0.92612 0.83991 1.86566 1.78571 1.44713 1.13687 1.20674 0.75322 0.85435 0.83512 1.90913 1.41611 1.18730 1.86719 1.19031 1.08963 0.96262 0.89258 1.21717 0.91471 0.90560 1.01751 1.21170 1.00046 1.01309 0.90605 1.21409 0.96944 0.92777 0.99802 1.17435 1.06798 0.93800 0.78809 1.91565 1.93454 1.88312 1.36917 1.17634 0.98726 0.80805 0.91834 1.91639 1.85530 1.35283 1.95677 0.91843 0.93121 0.91757 0.89341 0.91709 0.94578 0.93652 0.92700 0.88370 0.88445 0.81885 0.82962 0.82906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.10 1.54 5.93 -4.05 -0.02 1.52 16 3 N -0.59 -12.01 2.46 -175.06 -0.43 -12.44 16 4 C 0.25 6.24 5.16 -5.19 -0.03 6.21 16 5 C -0.53 -14.58 9.39 -34.44 -0.32 -14.91 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 9 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.51 10.32 7.75 -10.98 -0.09 10.24 16 14 O -0.52 -12.74 16.08 -14.10 -0.23 -12.97 16 15 C 0.05 0.79 4.51 36.01 0.16 0.95 16 16 O -0.32 -5.06 9.01 -47.24 -0.43 -5.49 16 17 C 0.51 7.37 7.89 34.54 0.27 7.64 16 18 O -0.49 -8.06 15.13 -19.26 -0.29 -8.35 16 19 C -0.13 -1.56 5.88 -104.94 -0.62 -2.17 16 20 C -0.04 -0.33 9.61 -39.17 -0.38 -0.71 16 21 C -0.11 -0.70 10.02 -39.65 -0.40 -1.10 16 22 C -0.09 -0.57 10.01 -39.45 -0.39 -0.97 16 23 C 0.05 0.48 7.30 -39.42 -0.29 0.20 16 24 F -0.12 -1.25 17.18 2.25 0.04 -1.21 16 25 C 0.13 1.52 7.29 -38.88 -0.28 1.24 16 26 F -0.10 -1.43 15.46 2.25 0.03 -1.40 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 31 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.10 1.39 7.40 -51.93 -0.38 1.01 16 36 H 0.10 1.33 7.18 -51.93 -0.37 0.96 16 37 H 0.16 1.48 7.61 -52.48 -0.40 1.08 16 38 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -34.14 353.84 -6.68 -40.82 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -4.33 Total: -3.42 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -2.10 Total: 7.95 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.31 Total: -37.70 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.94 Total: -26.81 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.07 Total: -2.61 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.14 -6.68 -40.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726677482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.664 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds