Wall clock time and date at job start Tue Mar 31 2020 15:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47539 * 2 1 4 4 C 1.46500 * 120.00282 * 270.00416 * 3 2 1 5 5 C 1.50704 * 109.46716 * 269.99941 * 4 3 2 6 6 H 1.07998 * 120.00154 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00084 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99967 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00392 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46771 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47605 * 119.99462 * 9 7 5 12 12 H 1.48498 * 109.47011 * 239.99882 * 9 7 5 13 13 C 1.34775 * 120.00135 * 89.99624 * 3 2 1 14 14 O 1.21279 * 120.00300 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99773 * 0.02562 * 13 3 2 16 16 O 1.45206 * 109.47147 * 179.97438 * 15 13 3 17 17 C 1.34727 * 116.99935 * 179.97438 * 16 15 13 18 18 O 1.21490 * 120.00030 * 0.02562 * 17 16 15 19 19 C 1.47566 * 119.99596 * 180.02562 * 17 16 15 20 20 C 1.39742 * 120.16640 * 359.72299 * 19 17 16 21 21 C 1.37821 * 119.92029 * 179.77195 * 20 19 17 22 22 C 1.38462 * 120.25109 * 0.50443 * 21 20 19 23 23 C 1.38379 * 120.32255 * 359.74913 * 22 21 20 24 24 F 1.35105 * 119.96208 * 179.97438 * 23 22 21 25 25 C 1.38539 * 120.07716 * 359.97438 * 23 22 21 26 26 F 1.35104 * 120.12268 * 180.02562 * 25 23 22 27 27 H 1.09005 * 109.47543 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47221 * 300.00363 * 1 2 3 29 29 H 1.09006 * 109.46809 * 60.00184 * 1 2 3 30 30 H 1.09003 * 109.47221 * 239.99637 * 2 1 3 31 31 H 1.09002 * 109.46764 * 120.00327 * 2 1 3 32 32 H 1.08997 * 109.47188 * 29.99019 * 4 3 2 33 33 H 1.09000 * 109.47702 * 149.99942 * 4 3 2 34 34 H 0.97000 * 119.99819 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46980 * 59.99839 * 15 13 3 36 36 H 1.09004 * 109.47113 * 299.99819 * 15 13 3 37 37 H 1.08003 * 120.03678 * 359.97438 * 20 19 17 38 38 H 1.08001 * 119.87717 * 180.23174 * 21 20 19 39 39 H 1.07994 * 119.83787 * 179.76397 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3903 -2.8774 8 7 3.3496 3.1266 -3.6175 9 14 5.9139 2.0973 -3.4163 10 1 6.6015 1.2420 -2.4158 11 1 5.9219 1.4188 -4.7372 12 1 6.6212 3.3986 -3.5240 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9922 1.3059 2.4723 16 8 2.3072 2.1953 3.5760 17 6 2.1355 1.7098 4.8209 18 8 1.7340 0.5743 4.9801 19 6 2.4350 2.5574 5.9912 20 6 2.9025 3.8621 5.8120 21 6 3.1762 4.6509 6.9086 22 6 2.9997 4.1521 8.1881 23 6 2.5423 2.8599 8.3774 24 9 2.3732 2.3805 9.6292 25 6 2.2576 2.0572 7.2847 26 9 1.8105 0.7956 7.4684 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 3.6757 3.5170 -4.4434 35 1 2.6227 0.4186 2.5298 36 1 0.9443 1.0114 2.5302 37 1 3.0460 4.2529 4.8155 38 1 3.5339 5.6604 6.7693 39 1 3.2199 4.7748 9.0426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726677482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:15 Heat of formation + Delta-G solvation = -195.162830 kcal Electronic energy + Delta-G solvation = -27085.548249 eV Core-core repulsion = 22629.188347 eV Total energy + Delta-G solvation = -4456.359902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.66560 -49.73735 -41.92013 -40.67505 -39.63358 -37.71162 -36.98432 -34.93622 -32.80605 -31.73990 -31.54737 -30.59824 -28.46194 -25.98201 -24.82764 -24.18199 -23.87253 -22.48321 -20.36452 -19.75538 -18.84348 -18.68449 -18.47289 -18.02345 -18.00677 -17.66751 -17.41041 -17.24994 -16.76484 -16.27417 -16.11545 -15.92985 -15.86442 -15.47123 -14.89804 -14.76776 -14.57932 -14.18648 -14.00437 -13.92207 -13.61830 -13.29455 -13.23387 -13.11035 -13.04868 -12.92910 -12.69207 -12.51817 -12.25130 -12.09457 -11.87198 -11.82711 -11.69176 -10.75254 -10.64460 -10.39016 -9.95599 -9.55122 -8.22908 -6.37150 -0.80141 -0.24560 0.99669 1.15452 1.38018 1.40043 1.51525 1.60204 2.23785 2.27257 2.41130 2.56652 3.07351 3.12854 3.23262 3.39413 3.53915 3.62235 3.85939 3.92806 4.03409 4.13595 4.31586 4.36936 4.57864 4.59748 4.82849 4.85148 4.93711 4.94687 4.99280 5.03513 5.09830 5.20684 5.35249 5.52507 5.54143 5.79229 6.04402 6.33583 6.60095 6.72143 7.19735 7.36340 8.84735 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018351 B = 0.002658 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.450193 B =10531.077441 C =11425.337204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.270 1.270 12 H -0.281 1.281 13 C 0.502 3.498 14 O -0.572 6.572 15 C 0.061 3.939 16 O -0.333 6.333 17 C 0.509 3.491 18 O -0.516 6.516 19 C -0.154 4.154 20 C -0.038 4.038 21 C -0.093 4.093 22 C -0.065 4.065 23 C 0.046 3.954 24 F -0.130 7.130 25 C 0.106 3.894 26 F -0.125 7.125 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.029 0.971 33 H 0.003 0.997 34 H 0.268 0.732 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.160 0.840 38 H 0.193 0.807 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.761 -0.364 23.012 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.196 1.196 12 H -0.207 1.207 13 C 0.289 3.711 14 O -0.452 6.452 15 C -0.015 4.015 16 O -0.248 6.248 17 C 0.354 3.646 18 O -0.407 6.407 19 C -0.156 4.156 20 C -0.056 4.056 21 C -0.110 4.110 22 C -0.083 4.083 23 C 0.026 3.974 24 F -0.109 7.109 25 C 0.085 3.915 26 F -0.104 7.104 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.047 0.953 33 H 0.021 0.979 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.177 0.823 38 H 0.210 0.790 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.723 -0.111 22.887 23.049 hybrid contribution 0.446 -0.742 -0.644 1.079 sum -2.276 -0.853 22.244 22.376 Atomic orbital electron populations 1.22179 0.94345 1.03757 1.01883 1.21864 0.95542 0.81067 1.04397 1.48192 1.63556 1.15208 1.05710 1.18811 0.95582 0.91780 0.79648 1.21727 0.97784 1.32090 1.06623 0.92753 1.25827 1.02311 0.94435 0.96402 1.70051 1.37667 1.34136 1.14824 0.85371 0.79086 0.78026 0.78339 1.19181 1.19564 1.20678 1.20388 0.78449 0.86666 0.85585 1.90671 1.46991 1.19853 1.87663 1.22908 1.04891 0.92042 0.81682 1.86563 1.78919 1.45069 1.14254 1.21153 0.74450 0.85527 0.83455 1.90885 1.43064 1.19858 1.86844 1.18970 1.11382 0.97181 0.88076 1.21836 0.91225 0.89748 1.02817 1.21605 0.97756 1.02301 0.89365 1.21881 0.93905 0.91352 1.01210 1.17668 1.07191 0.94646 0.77906 1.91551 1.93582 1.88613 1.37127 1.17925 1.00332 0.80532 0.92667 1.91571 1.86141 1.36831 1.95817 0.88516 0.92433 0.93559 0.89938 0.88528 0.95268 0.97932 0.92353 0.86404 0.85944 0.82276 0.78999 0.78913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.24 71.98 0.74 -3.24 16 2 C 0.09 2.76 5.93 86.38 0.51 3.28 16 3 N -0.59 -24.58 2.46 -826.17 -2.03 -26.61 16 4 C 0.26 13.81 5.16 85.63 0.44 14.25 16 5 C -0.54 -30.72 9.39 25.60 0.24 -30.48 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.53 5.46 84.65 0.46 1.00 16 8 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 9 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.50 20.78 7.75 87.66 0.68 21.46 16 14 O -0.57 -29.22 16.08 15.77 0.25 -28.97 16 15 C 0.06 1.89 4.51 71.24 0.32 2.21 16 16 O -0.33 -10.55 9.01 -49.98 -0.45 -11.00 16 17 C 0.51 14.88 7.89 70.28 0.55 15.43 16 18 O -0.52 -17.05 15.13 19.87 0.30 -16.75 16 19 C -0.15 -3.57 5.88 -20.07 -0.12 -3.69 16 20 C -0.04 -0.63 9.61 22.53 0.22 -0.41 16 21 C -0.09 -0.79 10.02 22.22 0.22 -0.57 16 22 C -0.07 -0.57 10.01 22.36 0.22 -0.34 16 23 C 0.05 0.78 7.30 22.38 0.16 0.94 16 24 F -0.13 -2.45 17.18 44.97 0.77 -1.67 16 25 C 0.11 2.45 7.29 22.73 0.17 2.61 16 26 F -0.13 -3.59 15.46 44.97 0.70 -2.89 16 27 H 0.10 1.73 8.14 -2.38 -0.02 1.72 16 28 H 0.06 1.32 7.22 -2.39 -0.02 1.30 16 29 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.08 2.55 8.07 -2.39 -0.02 2.53 16 31 H 0.10 2.26 6.44 -2.39 -0.02 2.25 16 32 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 33 H 0.00 0.15 7.42 -2.39 -0.02 0.14 16 34 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 35 H 0.12 3.17 7.40 -2.39 -0.02 3.15 16 36 H 0.12 3.15 7.18 -2.38 -0.02 3.13 16 37 H 0.16 2.77 7.61 -2.91 -0.02 2.75 16 38 H 0.19 0.21 8.06 -2.91 -0.02 0.18 16 39 H 0.19 0.20 8.06 -2.91 -0.02 0.18 16 Total: -1.00 -78.74 353.84 7.77 -70.97 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: 1.10 Total: 3.05 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 4.82 Total: 22.45 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.74 Total: -81.41 kcal Atomic # 8 Polarization: -56.82 SS G_CDS: 0.10 Total: -56.72 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 1.47 Total: -4.56 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -78.74 7.77 -70.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726677482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.197 kcal (2) G-P(sol) polarization free energy of solvation -78.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds